Genetic diversity in a collection of old and new bread wheat cultivars from Iran as revealed by simple sequence repeat-based analysis

Annals of Applied Biology

Volumn 154, Issue 1, 2009, Pages 67-76

  Mohammadi, S A ^a   Khodarahmi, M ^b   Jamalirad, S ^a   Jalal Kamali, M R ^b  

^a UNIVERSITY OF TABRIZ   (Iran)

^b SEED AND PLANT IMPROVEMENT INSTITUTE   (Iran)

Author keywords

Bread wheat; Genetic diversity; SSR markers

Indexed keywords

CHROMOSOME; CULTIVAR; DNA FINGERPRINTING; GENETIC VARIATION; GENOTYPE; POLYMORPHISM;

TRITICUM AESTIVUM;

EID: 58249112865     PISSN: 00034746     EISSN: 17447348     Source Type: Journal    
DOI: 10.1111/j.1744-7348.2008.00273.x     Document Type: Article

References (35)

1. Botstein D., White R.L., Skolnick M., Davis R.W. (1980) Construction of a genetic linkage map in man using restricted fragment length polymorphism. American Journal of Human Genetics, 23, 314 331.
2. Bryant D 2005) On the uniqueness of the selection criterion in neighbor-joining. Journal of Classification, 1, 3 15.
3. Christiansen M.J., Andersen S.B., Ortiz R. (2002) Diversity changes in an intensively bred wheat germplasm during the 20th century. Molecular Breeding, 9, 1 11.
4. CIMMYT (2005) Laboratory Protocols: CIMMYT Applied Molecular Genetics Laboratory. 3rd Edn. México, D.F., Mexico : CIMMYT Int.
5. Dreisigacker S., Zhang P., Warburton M.L., Van Ginkel M., Hoisington D., Bohn M., Melchinger A.E. (2004) SSR and pedigree analyses of genetic diversity among CIMMYT wheat lines targeted to different mega-environments. Crop Science, 44, 381 388.
6. Dreisigacker S., Zhang P., Warburton M.L., Skovmand B., Hoisington D., Melchinger A.E. (2005) Genetic diversity among and within CIMMYT wheat landrace accessions investigated with SSRs and implications for plant genetic resources management. Crop Science, 45, 653 661.
7. Fernie A.R., Tadmor Y., Zamir D. (2006) Natural genetic variation for improving crop quality. Current Opinion in Plant Biology, 9, 196 202.
8. Frankel O.H. (1977) Genetic resources: the genetic basis of epidemics in agriculture. Annals of the New York Academy of Sciences, 287, 332 334.
9. Gilbert J.E., Lewis R.V., Wilkinson M.J., Caligari P.D.S. (1999) Developing an appropriate strategy to assess genetic variability in plant germplasm collections. Theoretical and Applied Genetics, 98, 1125 1131.
10. Guyomarc'h H., Sourdille P., Charmet G., Edwards K., Bernard M. (2002) Characterization of polymorphic microsatellite markers from Aegilops tauschii and transferability to the D-genome of bread wheat. Theoretical and Applied Genetics, 104, 1164 1172.
11. Hai L., Wagner C., Friedt W. (2007) Quantitative structure analysis of genetic diversity among spring bread wheat (Triticum aestivum L.) from different geographical regions. Genetica, 130, 213 225.
12. Hao C.Y., Zhang X.Y., Wang L.F., Dong Y.S., Shang X.W., Jia J.Z. (2006) Genetic diversity and core collection evaluations in common wheat germplasm from the Northwestern spring wheat region in China. Molecular Breeding, 17, 69 77.
13. Heckenberger M., Melchinger A.E., Ziegle J.S., Joe L.K., Hauser J.D., Hutton M, Bohn M. (2002) Variation of DNA fingerprints among accessions within maize inbred lines with regard to the identification of essentially derived varieties. I. Genetic and technical sources of variation in SSR data. Molecular Breeding, 10, 181 191.
14. Hernandez P., Laurie D.A., Martin A., Snape J.W. (2002) Utility of wheat simple sequence repeat (SSR) markers for genetic analysis of Hordeum chilense and tritordeum. Theoretical and Applied Genetics, 104, 535 739.
15. Huang X.Q., Börner A., Röder M.S., Ganal M.W. (2002) Assessing genetic diversity of wheat (Triticum aestivum L.) germplasm using microsatellite markers. Theoretical and Applied Genetics, 105, 699 707.
16. Kosman E., Leonard K.J. (2005) Similarity coefficients for molecular markers in studies of genetic relationships between individuals for haploid, diploid, and polyploid species. Molecular Ecology, 14, 415 424.
17. Kumar S., Tamura K., Nei M. (2004) MEGA3. Integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics, 5, 150 163.
18. Lewis P.O., Zaykin D. (2002) Genetic data analysis software, release 1.1 WWW document URL http://lewis.eeb.uconn.edu/lewishome/software.html (accessed May 2007).
19. Liu K., Muse S. V. (2005) Power Marker: Integrated analysis environment for genetic marker data. Bioinformatics, 21, 2118 2119.
20. Maccaferri M., Sanguineti M.C., Donini P., Tuberosa R. (2003) Microsatellite analysis reveals a progressive widening of the genetic basis in the elite durum wheat germplasm. Theoretical and Applied Genetics, 107, 783 797.
21. Murray B.W. (1996) The estimation of genetic distance and population substructure from microsatellite allele frequency data WWW document URL http://helix.biology.mcmaster.ca/brent/brent.html (accessed June 2007).
22. Nei M. (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89, 583 590.
23. Plaschke J., Ganal M.W., Röder M.S. (1995) Detection of genetic diversity in closely related bread wheat using microsatellite markers. Theoretical and Applied Genetics, 91, 1001 1010.
24. Röder M.S., Korzun V., Wendehake K., Plaschke J., Tixier M.H., Leroy P., Ganal M.W. (1998) A microsatellite map of wheat. Genetics, 149, 2007 2023.
25. Röder M.S., Plaschke J., König S.U., Börner A., Sorrells M.E., Tanksley S.D., Ganal M.W. (1995) Abundance, variability and chromosomal location of microsatellites in wheat. Molecular and General Genetics, 246, 327 333.
26. Saghai-Maroof M.A., Soliman K., Jorgensen R.A., Allard R.W. (1984) Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosome location and population dynamics. Proceedings of National Academy of Sciences of the United States of America, 81, 8014 8018.
27. Saidi A., Akbari A., Mozzaffari J., Heidari A., Seraj-Azari M., Priayeshfar B., Yazdansepas A., Toorabi M., Alizadeh A., Vahabzadeh M., Asadi H., Jalal-Kamali M.R. (2001) Iranian wheat pool. In The World Wheat Book: A History of Wheat Breeding, pp. 881 898. Eds A.P. Bonjean and W.J. Angus. Paris : Laroiser Publishing.
28. Salamini F., Özkan H., Brandolini A., Schäfer-Pregl R., Martin W. (2002) Genetics and geography of wild cereal domestication in the near east. Nature Review Genetics, 3, 429 441.
29. Smale M., Reynolds M.P., Warburton M.L., Skovmand B., Trethowan R., Singh R.P., Ortiz-Monasterio I., Crossa J. (2002) Dimension of diversity in modern spring bread wheat in developing countries from 1965. Crop Science, 42, 1766 1779.
30. Somers D.J., Isaac P., Edwards K. (2004) A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.). Theoretical and Applied Genetics, 109, 1105 1114.
31. Song Q.J., Shi J.R., Singh S., Fickus E.W., Costa J.M., Lewis J., Gill B.S., Ward R., Cregan P.B. (2005) Development and mapping of microsatellite (SSR) markers in wheat. Theoretical and Applied Genetics, 110, 550 560.
32. Stachel M., Lelley T., Grausgruber H., Vollmann J. (2000) Application of microsatellites in wheat (Triticum aestivum L.) for studying genetic differentiation caused by selection for adaptation and use. Theoretical and Applied Genetics, 100, 242 248.
33. Tanksley S.D., McCouch S.R. (1997) Seed banks and molecular maps: unlocking genetic potential from the wild. Science, 277, 1063 1066.
34. Van-Slageren M.V. (1994) Wild Wheats: A Monograph of Aegilops L. and Amblopyrum (Jaub and Spach) Eig (Poaceae). Wageningen, the Netherlands : Wageningen Agricultural University.
35. Zhang X.Y., Li C.W., Wang L.F., Wang H.M., You G.X., Dong Y.S. (2002) An estimation of the minimum number of SSR alleles needed to reveal genetic relationships in wheat varieties. I. Information from large-scale planted varieties and cornerstone breeding parents in Chinese wheat improvement and production. Theoretical and Applied Genetics, 106, 112 117.