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Volumn 379, Issue 2, 2009, Pages 494-498

A steered molecular dynamics method with adaptive direction adjustments

Author keywords

Dissociation pathway; Genetic algorithm; Information entropy; Metyrapone P450 3A4 complex; Steered molecular dynamics

Indexed keywords

CYTOCHROME P450 3A4; METYRAPONE;

EID: 58149526293     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2008.12.099     Document Type: Article
Times cited : (20)

References (22)
  • 3
    • 0029062769 scopus 로고
    • Sensitive force technique to probe molecular adhesion and structural linkages at biological interfaces
    • Evans E., Ritchie K., and Merkel R. Sensitive force technique to probe molecular adhesion and structural linkages at biological interfaces. Biophys. J. 68 (1995) 2580-2587
    • (1995) Biophys. J. , vol.68 , pp. 2580-2587
    • Evans, E.1    Ritchie, K.2    Merkel, R.3
  • 6
    • 0030059225 scopus 로고    scopus 로고
    • Ligand binding: molecular mechanics calculation of the streptavidin-biotin rupture force
    • Grubmüller H., Heymann B., and Tavan P. Ligand binding: molecular mechanics calculation of the streptavidin-biotin rupture force. Science 271 (1996) 997-999
    • (1996) Science , vol.271 , pp. 997-999
    • Grubmüller, H.1    Heymann, B.2    Tavan, P.3
  • 7
    • 0031848099 scopus 로고    scopus 로고
    • Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation
    • Lu H., Isralewitz B., Krammer A., Vogel V., and Schulten K. Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation. Biophys. J. 75 (1998) 662-671
    • (1998) Biophys. J. , vol.75 , pp. 662-671
    • Lu, H.1    Isralewitz, B.2    Krammer, A.3    Vogel, V.4    Schulten, K.5
  • 8
    • 0030834853 scopus 로고    scopus 로고
    • Binding pathway of retinal to bacterioopsin: a prediction by molecular dynamics simulations
    • Isralewitz B., Izrailev S., and Schulten K. Binding pathway of retinal to bacterioopsin: a prediction by molecular dynamics simulations. Biophys. J. 73 (1997) 2972-2979
    • (1997) Biophys. J. , vol.73 , pp. 2972-2979
    • Isralewitz, B.1    Izrailev, S.2    Schulten, K.3
  • 11
    • 0041691306 scopus 로고    scopus 로고
    • How does huperzine A enter and leave the binding gorge of acetylcholinesterase? Steered molecular dynamics simulations
    • Xu Y., Shen J., Luo X., Silman I., Sussman J.L., Chen K., and Jiang H. How does huperzine A enter and leave the binding gorge of acetylcholinesterase? Steered molecular dynamics simulations. J. Am. Chem. Soc. 125 (2003) 11340-11349
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 11340-11349
    • Xu, Y.1    Shen, J.2    Luo, X.3    Silman, I.4    Sussman, J.L.5    Chen, K.6    Jiang, H.7
  • 13
    • 0029892263 scopus 로고    scopus 로고
    • P450s: structural similarities and functional differences (1)
    • Graham-Lorence S., and Peterson J.A. P450s: structural similarities and functional differences (1). FASEB J. 10 (1996) 206-214
    • (1996) FASEB J. , vol.10 , pp. 206-214
    • Graham-Lorence, S.1    Peterson, J.A.2
  • 15
    • 4644301430 scopus 로고    scopus 로고
    • The structure of human microsomal cytochrome P450 3A4 determined by X-ray crystallography to 2.05-Å resolution
    • Yano J.K., Wester M.R., Schoch G.A., Griffin K.J., Stout C.D., and Johnson E.F. The structure of human microsomal cytochrome P450 3A4 determined by X-ray crystallography to 2.05-Å resolution. J. Biol. Chem. 279 (2004) 38091-38094
    • (2004) J. Biol. Chem. , vol.279 , pp. 38091-38094
    • Yano, J.K.1    Wester, M.R.2    Schoch, G.A.3    Griffin, K.J.4    Stout, C.D.5    Johnson, E.F.6
  • 16
    • 34047182574 scopus 로고    scopus 로고
    • Possible pathway(s) of metyrapone egress from the active site of cytochrome P450 3A4: a molecular dynamics simulation
    • Li W., Liu H., Luo X., Zhu W., Tang Y., Halpert J.R., and Jiang H. Possible pathway(s) of metyrapone egress from the active site of cytochrome P450 3A4: a molecular dynamics simulation. Drug Metab. Dispos. 35 (2007) 689-696
    • (2007) Drug Metab. Dispos. , vol.35 , pp. 689-696
    • Li, W.1    Liu, H.2    Luo, X.3    Zhu, W.4    Tang, Y.5    Halpert, J.R.6    Jiang, H.7
  • 18
    • 0029633168 scopus 로고
    • GROMACS: a message-passing parallel molecular dynamics implementation
    • Berendsen H.J.C., van der Spoel D., and van Drunen R. GROMACS: a message-passing parallel molecular dynamics implementation. Comp. Phys. Comm. 91 (1995) 43-56
    • (1995) Comp. Phys. Comm. , vol.91 , pp. 43-56
    • Berendsen, H.J.C.1    van der Spoel, D.2    van Drunen, R.3
  • 19
    • 0035789518 scopus 로고    scopus 로고
    • GROMACS 3.0: a package for molecular simulation and trajectory analysis
    • Lindahl E., Hess B., and van der Spoel D. GROMACS 3.0: a package for molecular simulation and trajectory analysis. J. Mol. Mod. 7 (2001) 306-317
    • (2001) J. Mol. Mod. , vol.7 , pp. 306-317
    • Lindahl, E.1    Hess, B.2    van der Spoel, D.3
  • 21
    • 58049221176 scopus 로고    scopus 로고
    • An improved adaptive genetic algorithm for protein-ligand docking
    • 10.1007/s10822-008-9232-5
    • Kang L., Li H., Jiang H., and Wang X. An improved adaptive genetic algorithm for protein-ligand docking. J. Comput. Aided Mol. Des. (2004) 10.1007/s10822-008-9232-5
    • (2004) J. Comput. Aided Mol. Des.
    • Kang, L.1    Li, H.2    Jiang, H.3    Wang, X.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.