Molecular detection of all 34 distinct O-antigen forms of Shigella

Journal of Medical Microbiology

Volumn 58, Issue 1, 2009, Pages 69-81

  Li, Yayue ^a,b,d,e   Cao, Boyang ^c,d,e   Liu, Bin ^c,d,e   Liu, Dan ^a   Gao, Qili ^f   Peng, Xia ^c,d,e   Wu, Junli ^c,d,e   Bastin, David A ^a   Feng, Lu ^c,d,e   Wang, Lei ^a,c,d,e,g  

^a Tianjin Biochip Corporation   (China)

^b TIANJIN UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^c NANKAI UNIVERSITY   (China)

^d TEDA   (China)

^e BEIJING UNIVERSITY OF POSTS AND TELECOMMUNICATIONS   (China)

^f Tianjin Entry Exit Inspection and Quarantine Bureau   (China)

^g Biology and Environment   (Australia)

Author keywords

EIEC; Enteroinvasive E. Coli

Indexed keywords

GENOMIC DNA; O ANTIGEN; OLIGONUCLEOTIDE;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; BROTH DILUTION; COLONY FORMING UNIT; CONCENTRATION RESPONSE; DNA EXTRACTION; DNA MICROARRAY; FECES ANALYSIS; FOOD ORGANISM; GENE TARGETING; GENETIC SELECTION; MULTIPLEX POLYMERASE CHAIN REACTION; NONHUMAN; NUCLEOTIDE SEQUENCE; OLIGONUCLEOTIDE PROBE; PRIORITY JOURNAL; REPRODUCIBILITY; SEROTYPE; SEROTYPING; SHIGELLA; SHIGELLA BOYDII; SHIGELLA DYSENTERIAE; SHIGELLA FLEXNERI; SHIGELLA SONNEI;

DNA, BACTERIAL; ESCHERICHIA COLI; O ANTIGENS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; OLIGONUCLEOTIDE PROBES; POLYMERASE CHAIN REACTION; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SEROTYPING; SHIGELLA;

EID: 58149513412     PISSN: 00222615     EISSN: None     Source Type: Journal    
DOI: 10.1099/jmm.0.000794-0     Document Type: Article

References (29)

1. Ahmed, F., Clemens, J. D., Rao, M. R., Ansaruzzaman, M. & Haque, E. (1997). Epidemiology of shigellosis among children exposed to cases of Shigella dysentery: a multivariate assessment. Am J Trop Med Hyg 56, 258-264.
2. Bennish, M. L. (1991). Potentially lethal complications of shigellosis. Rev Infect Dis 13 (Suppl. 4), S319-S324.
3. Beutin, L., Tao, J., Feng, L., Krause, G., Zimmermann, S., Gleier, K., Xia, Q. & Wang, L. (2005). Sequence analysis of the Escherichia coli O15 antigen gene cluster and development of a PCR assay for rapid detection of intestinal and extraintestinal pathogenic E. coli O15 strains. J Clin Microbiol 43, 703-710.
4. Bopp, C. A., Brenner, F. W., Fields, P. I., Wells, J. G. & Strockbine, N. A. (2003). Escherichia, Shigella, and Salmonella.ln Manual of Clinical Microbiology, 8th edn, pp. 654-671. Edited by P. R. Murray, E. J. Baron, J. H. Jorgensen, M. A. Pfaller & R. H. Yolken. Washington, DC: American Society for Microbiology.
5. Casalino, M., Latella, M. C., Prosseda, G. & Colonna, B. (2003). CadC is the preferential target of a convergent evolution driving enteroinvasive Escherichia coli toward a lysine decarboxylase-defective phenotype. Infect Immun 71, 5472-5479.
6. Cheah, K. Y., Beger, D. W. & Manning, P. A. (1991). Molecular cloning and genetic analysis of the rfb region from Shigella flexneri type 6 in Escherichia coli K-12. FEMS Microbiol Lett 83, 213-218.
7. DebRoy, C., Fratamico, P. M., Roberts, E., Davis, M. A. & Liu, Y. (2005). Development of PCR assays targeting genes in O-antigen gene clusters for detection and identification of Escherichia coli O45 and O55 serogroups. Appl Environ Microbiol 71, 4919-4924.
8. DuPont, H. L., Levine, M. M., Hornick, R. B. & Formal, S. B. (1989). Inoculum size in shigellosis and implications for expected mode of transmission. J Infect Dis 159, 1126-1128.
9. Feng, L., Tao, J., Guo, H., Xu, J., Li, Y., Rezwan, F., Reeves, P. & Wang, L. (2004a). Structure of the Shigella dysenteriae 7 O antigen gene cluster and identification of its antigen specific genes. Microb Pathog 36, 109-115.
10. Feng, L., Wang, W., Tao, J., Guo, H., Krause, G., Beutin, L. & Wang, L. (2004b). Identification of Escherichia coli O114 O-antigen gene cluster and development of an O114 serogroup-specific PCR assay. J Clin Microbiol 42, 3799-3804.
11. Fratamico, P. M., Briggs, C. E., Needle, D., Chen, C. Y. & DebRoy, C. (2003). Sequence of the Escherichia coli O121 O-antigen gene cluster and detection of enterohemorrhagic E. coli O121 by PCR amplification of the wzx and wzy genes. J Clin Microbiol 41, 3379-3383.
12. Johnson, J. R. (2000). Shigella and Escherichia coli at the crossroads: machiavellian masqueraders or taxonomic treachery? J Med Microbiol 49, 583-585.
13. Koterski, J. F., Nahvi, M., Venkatesan, M. M. & Haimovich, B. (2005). Virulent Shigella flexneri causes damage to mitochondria and triggers necrosis in infected human monocyte-derived macrophages. Infect Immun 73, 504-513.
14. Kotloff, K. L., Winickoff, J. P., Ivanoff, B., Clemens, J. D., Swerdlow, D. L., Sansonetti, P. J., Adak, G. K. & Levine, M. M. (1999). Global burden of Shigella infections: implications for vaccine development and implementation of control strategies. Bull World Health Organ 77, 651-666.
15. Lai, V., Wang, L. & Reeves, P. R. (1998). Escherichia coli clone Sonnei (Shigella sonnei) had a chromosomal O-antigen gene cluster prior to gaining its current plasmid-borne O-antigen genes. J Bacteriol 180, 2983-2986.
16. Lan, R. & Reeves, P. R. (2002). Escherichia coli in disguise: molecular origins of Shigella. Microbes Infect 4, 1125-1132.
17. Li, Y., Liu, D., Cao, B., Han, W., Liu, Y., Liu, F., Guo, X., Bastin, D. A., Feng, L. & Wang, L. (2006). Development of a serotype-specific DNA microarray for identification of some Shigella and pathogenic Escherichia coli strains. J Clin Microbiol 44, 4376-4383.
18. Liu, B., Knirel, Y. A., Feng, L., Perepelov, A. V., Senchenkova, S. N., Wang, Q., Reeves, P. & Wang, L. (2008). Structure and genetics of Shigella O antigens. FEMS Microbiol Rev 32, 627-653.
19. Maurelli, A. T., Fernandez, R. E., Bloch, C. A., Rode, C. K. & Fasano, A. (1998). ''Black holes'' and bacterial pathogenicity: a large genomic deletion that enhances the virulence of Shigella spp. and enteroinvasive Escherichia coli. Proc Natl Acad Sci U S A 95, 3943-3948.
20. NIAID (2003). NIAID Biodefense Research Agenda for Category B and C Priority Pathogens. NIH Publication No. 03-5315.
21. Panicker, G., Call, D. R., Krug, M. J. & Bej, A. K. (2004). Detection of pathogenic Vibrio spp. in shellfish by using multiplex PCR and DNA microarrays. Appl Environ Microbiol 70, 7436-7444.
22. Rouillard, J. M., Zuker, M. & Gulari, E. (2003). OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach. Nucleic Acids Res 31, 3057-3062.
23. Schena, M. (2003). Microarray surfaces. In Microarray Analysis, pp. 95-120. New York: Wiley.
24. Shiga, K. (1906). Observations on the epidemiology of dysentery in Japan. Philipp J Sci 1, 485.
25. Simmons, D. A. R. & Romanowska, E. (1987). Structure and biology of Shigella flexneri O antigens. J Med Microbiol 23, 289-302.
26. Tao, J., Feng, L., Guo, H., Li, Y. & Wang, L. (2004). The O-antigen gene cluster of Shigella boydii O11 and functional identification of its wzy gene. FEMS Microbiol Lett 234, 125-132.
27. Tao, J., Wang, L., Liu, D., Li, Y., Bastin, D. A., Geng, Y. & Feng, L. (2005). Molecular analysis of Shigella boydii O1 O-antigen gene cluster and its PCR typing. Can J Microbiol 51, 387-392.
28. Venkatesan, M. M., Buysse, J. M. & Kopecko, D. J. (1989). Use of Shigella flexneri ipaC and ipaH gene sequences for the general identification of Shigella spp. and enteroinvasive Escherichia coli. J Clin Microbiol 27, 2687-2691.
29. Wang, L., Liu, B., Kong, Q., Steinruck, H., Krause, G., Beutin, L. & Feng, L. (2005). Molecular markers for detection of pathogenic Escherichia coli strains belonging to serogroups O 138 and O 139. Vet Microbiol 111, 181-190.