-
1
-
-
23844507858
-
Role of RNA structures present at the 3′UTR of dengue virus on translation, RNA synthesis, and viral replication
-
Alvarez, D. E., A. L. De Lella Ezcurra, S. Fucito, and A. V. Gamarnik. 2005. Role of RNA structures present at the 3′UTR of dengue virus on translation, RNA synthesis, and viral replication. Virology 339:200-212.
-
(2005)
Virology
, vol.339
, pp. 200-212
-
-
Alvarez, D.E.1
De Lella Ezcurra, A.L.2
Fucito, S.3
Gamarnik, A.V.4
-
2
-
-
42749084987
-
Functional analysis of dengue virus cyclization sequences located at the 5′ and 3′UTRs
-
Alvarez, D. E., C. V. Filomatori, and A. V. Gamarnik. 2008. Functional analysis of dengue virus cyclization sequences located at the 5′ and 3′UTRs. Virology 375:223-235.
-
(2008)
Virology
, vol.375
, pp. 223-235
-
-
Alvarez, D.E.1
Filomatori, C.V.2
Gamarnik, A.V.3
-
3
-
-
18744362727
-
Long-range RNA-RNA interactions circularize the dengue virus genome
-
Alvarez, D. E., M. F. Lodeiro, S. J. Luduena, L. I. Pietrasanta, and A. V. Gamarnik. 2005. Long-range RNA-RNA interactions circularize the dengue virus genome. J. Virol. 79:6631-6643.
-
(2005)
J. Virol
, vol.79
, pp. 6631-6643
-
-
Alvarez, D.E.1
Lodeiro, M.F.2
Luduena, S.J.3
Pietrasanta, L.I.4
Gamarnik, A.V.5
-
4
-
-
33645471457
-
Development of a live attenuated dengue virus vaccine using reverse genetics
-
Blaney, J. E., Jr., A. P. Durbin, B. R. Murphy, and S. S. Whitehead. 2006. Development of a live attenuated dengue virus vaccine using reverse genetics. Viral Immunol. 19:10-32.
-
(2006)
Viral Immunol
, vol.19
, pp. 10-32
-
-
Blaney Jr., J.E.1
Durbin, A.P.2
Murphy, B.R.3
Whitehead, S.S.4
-
5
-
-
38349050191
-
Dengue virus type 3 vaccine candidates generated by introduction of deletions in the 3′ untranslated region (3′-UTR) or by exchange of the DENV-3 3′-UTR with that of DENV-4
-
Blaney, J. E., Jr., N. S. Sathe, L. Goddard, C. T. Hanson, T. A. Romero, K. A. Hanley, B. R. Murphy, and S. S. Whitehead. 2008. Dengue virus type 3 vaccine candidates generated by introduction of deletions in the 3′ untranslated region (3′-UTR) or by exchange of the DENV-3 3′-UTR with that of DENV-4. Vaccine 26:817-828.
-
(2008)
Vaccine
, vol.26
, pp. 817-828
-
-
Blaney Jr., J.E.1
Sathe, N.S.2
Goddard, L.3
Hanson, C.T.4
Romero, T.A.5
Hanley, K.A.6
Murphy, B.R.7
Whitehead, S.S.8
-
6
-
-
33847777612
-
-
Blaney, J. E., Jr., N. S. Sathe, C. T. Hanson, C. Y. Firestone, B. R. Murphy, and S. S. Whitehead. 2007. Vaccine candidates for dengue virus type 1 (DEN1) generated by replacement of the structural genes of rDEN4 and rDEN4Delta30 with those of DEN1. Virol. J. 4:23.
-
Blaney, J. E., Jr., N. S. Sathe, C. T. Hanson, C. Y. Firestone, B. R. Murphy, and S. S. Whitehead. 2007. Vaccine candidates for dengue virus type 1 (DEN1) generated by replacement of the structural genes of rDEN4 and rDEN4Delta30 with those of DEN1. Virol. J. 4:23.
-
-
-
-
7
-
-
0023853793
-
Sequence and secondary structure analysis of the 5′-terminal region of flavivirus genome RNA
-
Brinton, M. A., and J. H. Dispoto. 1988. Sequence and secondary structure analysis of the 5′-terminal region of flavivirus genome RNA. Virology 162:290-299.
-
(1988)
Virology
, vol.162
, pp. 290-299
-
-
Brinton, M.A.1
Dispoto, J.H.2
-
8
-
-
0034063918
-
Attenuation markers of a candidate dengue type 2 vaccine virus, strain 16681 (PDK-53), are defined by mutations in the 5′ noncoding region and nonstructural proteins 1 and 3
-
Butrapet, S., C. Y. Huang, D. J. Pierro, N. Bhamarapravati, D. J. Gubler, and R. M. Kinney. 2000. Attenuation markers of a candidate dengue type 2 vaccine virus, strain 16681 (PDK-53), are defined by mutations in the 5′ noncoding region and nonstructural proteins 1 and 3. J. Virol. 74:3011-3019.
-
(2000)
J. Virol
, vol.74
, pp. 3011-3019
-
-
Butrapet, S.1
Huang, C.Y.2
Pierro, D.J.3
Bhamarapravati, N.4
Gubler, D.J.5
Kinney, R.M.6
-
9
-
-
0028930544
-
Growth-restricted dengue virus mutants containing deletions in the 5′ noncoding region of the RNA genome
-
Cahour, A., A. Pletnev, M. Vazielle-Falcoz, L. Rosen, and C. J. Lai. 1995. Growth-restricted dengue virus mutants containing deletions in the 5′ noncoding region of the RNA genome. Virology 207:68-76.
-
(1995)
Virology
, vol.207
, pp. 68-76
-
-
Cahour, A.1
Pletnev, A.2
Vazielle-Falcoz, M.3
Rosen, L.4
Lai, C.J.5
-
10
-
-
0037303672
-
Fine mapping of a cis-acting sequence element in yellow fever virus RNA that is required for RNA replication and cyclization
-
Corver, J., E. Lenches, K. Smith, R. A. Robison, T. Sando, E. G. Strauss, and J. H. Strauss. 2003. Fine mapping of a cis-acting sequence element in yellow fever virus RNA that is required for RNA replication and cyclization. J. Virol. 77:2265-2270.
-
(2003)
J. Virol
, vol.77
, pp. 2265-2270
-
-
Corver, J.1
Lenches, E.2
Smith, K.3
Robison, R.A.4
Sando, T.5
Strauss, E.G.6
Strauss, J.H.7
-
11
-
-
33747344212
-
A 5′ RNA element promotes dengue virus RNA synthesis on a circular genome
-
Filomatori, C. V., M. F. Lodeiro, D. E. Alvarez, M. M. Samsa, L. Pietrasanta, and A. V. Gamarnik. 2006. A 5′ RNA element promotes dengue virus RNA synthesis on a circular genome. Genes Dev. 20:2238-2249.
-
(2006)
Genes Dev
, vol.20
, pp. 2238-2249
-
-
Filomatori, C.V.1
Lodeiro, M.F.2
Alvarez, D.E.3
Samsa, M.M.4
Pietrasanta, L.5
Gamarnik, A.V.6
-
12
-
-
34548182109
-
Origin and evolution of flavivirus 5′UTRs and panhandles: Trans-terminal duplications?
-
Gritsun, T. S., and E. A. Gould. 2007. Origin and evolution of flavivirus 5′UTRs and panhandles: trans-terminal duplications? Virology 366:8-15.
-
(2007)
Virology
, vol.366
, pp. 8-15
-
-
Gritsun, T.S.1
Gould, E.A.2
-
13
-
-
35348925573
-
-
Lippincott-Raven, Philadelphia, PA
-
Gubler, D., G, Kuno, and L. Markoff. 2007. Flaviviruses, vol. 1. Lippincott-Raven, Philadelphia, PA.
-
(2007)
Flaviviruses
, vol.1
-
-
Gubler, D.G.1
Kuno2
Markoff, L.3
-
14
-
-
33947506827
-
Dengue/dengue haemorrhagic fever: History and current status
-
71-73
-
Gubler, D. J. 2006. Dengue/dengue haemorrhagic fever: history and current status. Novartis Found. Symp. 277:3-22, 71-73, 251-253.
-
(2006)
Novartis Found. Symp
, vol.277
, Issue.3-22
, pp. 251-253
-
-
Gubler, D.J.1
-
15
-
-
0023645817
-
Conserved elements in the 3′ untranslated region of flavivirus RNAs and potential cyclization sequences
-
Hahn, C. S., Y. S. Hahn, C. M. Rice, E. Lee, L. Dalgarno, E. G. Strauss, and J. H. Strauss. 1987. Conserved elements in the 3′ untranslated region of flavivirus RNAs and potential cyclization sequences. J. Mol. Biol. 198:33-41.
-
(1987)
J. Mol. Biol
, vol.198
, pp. 33-41
-
-
Hahn, C.S.1
Hahn, Y.S.2
Rice, C.M.3
Lee, E.4
Dalgarno, L.5
Strauss, E.G.6
Strauss, J.H.7
-
16
-
-
0141856225
-
Significance in replication of the terminal nucleotides of the flavivirus genome
-
Khromykh, A. A., N. Kondratieva, J. Y. Sgro, A. Palmenberg, and E. G. Westaway. 2003. Significance in replication of the terminal nucleotides of the flavivirus genome. J. Virol. 77:10623-10629.
-
(2003)
J. Virol
, vol.77
, pp. 10623-10629
-
-
Khromykh, A.A.1
Kondratieva, N.2
Sgro, J.Y.3
Palmenberg, A.4
Westaway, E.G.5
-
17
-
-
0034984219
-
Essential role of cyclization sequences in flavivirus RNA replication
-
Khromykh, A. A., H. Meka, K. J. Guyatt, and E. G. Westaway. 2001. Essential role of cyclization sequences in flavivirus RNA replication. J. Virol. 75:6719-6728.
-
(2001)
J. Virol
, vol.75
, pp. 6719-6728
-
-
Khromykh, A.A.1
Meka, H.2
Guyatt, K.J.3
Westaway, E.G.4
-
18
-
-
0030996972
-
Construction of infectious cDNA clones for dengue 2 virus: Strain 16681 and its attenuated vaccine derivative, strain PDK-53
-
Kinney, R. M., S. Butrapet, G. J. Chang, K. R. Tsuchiya, J. T. Roehrig, N. Bhamarapravati, and D. J. Gubler. 1997. Construction of infectious cDNA clones for dengue 2 virus: strain 16681 and its attenuated vaccine derivative, strain PDK-53. Virology 230:300-308.
-
(1997)
Virology
, vol.230
, pp. 300-308
-
-
Kinney, R.M.1
Butrapet, S.2
Chang, G.J.3
Tsuchiya, K.R.4
Roehrig, J.T.5
Bhamarapravati, N.6
Gubler, D.J.7
-
19
-
-
33645783003
-
Functional analysis of the tick-borne encephalitis virus cyclization elements indicates major differences between mosquito-borne and tick-borne flaviviruses
-
Kofler, R. M., V. M. Hoenninger, C. Thurner, and C. W. Mandl. 2006. Functional analysis of the tick-borne encephalitis virus cyclization elements indicates major differences between mosquito-borne and tick-borne flaviviruses. J. Virol. 80:4099-4113.
-
(2006)
J. Virol
, vol.80
, pp. 4099-4113
-
-
Kofler, R.M.1
Hoenninger, V.M.2
Thurner, C.3
Mandl, C.W.4
-
20
-
-
0033052643
-
Dengue virus structural differences that correlate with pathogenesis
-
Leitmeyer, K. C., D. W. Vaughn, D. M. Watts, R. Salas, I. Villalobos de Chacon, C. Ramos, and R. Rico-Hesse. 1999. Dengue virus structural differences that correlate with pathogenesis. J. Virol. 73:4738-4747.
-
(1999)
J. Virol
, vol.73
, pp. 4738-4747
-
-
Leitmeyer, K.C.1
Vaughn, D.W.2
Watts, D.M.3
Salas, R.4
Villalobos de Chacon, I.5
Ramos, C.6
Rico-Hesse, R.7
-
21
-
-
0036343505
-
Complete genome sequence, taxonomic assignment, and comparative analysis of the untranslated regions of the Modoc virus, a flavivirus with no known vector
-
Leyssen, P., N. Charlier, P. Lemey, F. Billoir, A. M. Vandamme, E. De Clercq, X. de Lamballerie, and J. Neyts. 2002. Complete genome sequence, taxonomic assignment, and comparative analysis of the untranslated regions of the Modoc virus, a flavivirus with no known vector. Virology 293:125-140.
-
(2002)
Virology
, vol.293
, pp. 125-140
-
-
Leyssen, P.1
Charlier, N.2
Lemey, P.3
Billoir, F.4
Vandamme, A.M.5
De Clercq, E.6
de Lamballerie, X.7
Neyts, J.8
-
22
-
-
34748873170
-
Flaviviridae: The viruses and their replication
-
D. M. Knipe and P. M. Howley ed, Lippincott-Raven, Philadelphia, PA
-
Lindenbach, B., H. Thiel, and C. M. Rice. 2007. Flaviviridae: the viruses and their replication, p. 1101-1133. In D. M. Knipe and P. M. Howley (ed.), Fields virology, vol. 1. Lippincott-Raven, Philadelphia, PA.
-
(2007)
Fields virology
, vol.1
, pp. 1101-1133
-
-
Lindenbach, B.1
Thiel, H.2
Rice, C.M.3
-
23
-
-
0141570502
-
Functional analysis of mosquito-borne flavivirus conserved sequence elements within 3′ untranslated region of West Nile virus by use of a reporting replicon that differentiates between viral translation and RNA replication
-
Lo, M. K., M. Tilgner, K. A. Bernard, and P. Y. Shi. 2003. Functional analysis of mosquito-borne flavivirus conserved sequence elements within 3′ untranslated region of West Nile virus by use of a reporting replicon that differentiates between viral translation and RNA replication. J. Virol. 77:10004-10014.
-
(2003)
J. Virol
, vol.77
, pp. 10004-10014
-
-
Lo, M.K.1
Tilgner, M.2
Bernard, K.A.3
Shi, P.Y.4
-
25
-
-
0029893436
-
Dengue type 4 virus mutants containing deletions in the 3′ noncoding region of the RNA genome: Analysis of growth restriction in cell culture and altered viremia pattern and immunogenicity in rhesus monkeys
-
Men, R., M. Bray, D. Clark, R. M. Chanock, and C. J. Lai. 1996. Dengue type 4 virus mutants containing deletions in the 3′ noncoding region of the RNA genome: analysis of growth restriction in cell culture and altered viremia pattern and immunogenicity in rhesus monkeys. J. Virol. 70:3930-3937.
-
(1996)
J. Virol
, vol.70
, pp. 3930-3937
-
-
Men, R.1
Bray, M.2
Clark, D.3
Chanock, R.M.4
Lai, C.J.5
-
26
-
-
33750238369
-
Secondary structure of dengue virus type 4 3′ untranslated region: Impact of deletion and substitution mutations
-
Romero, T. A., E. Tumban, J. Jun, W. B. Lott, and K. A. Hanley. 2006. Secondary structure of dengue virus type 4 3′ untranslated region: impact of deletion and substitution mutations. J. Gen. Virol. 87:3291-3296.
-
(2006)
J. Gen. Virol
, vol.87
, pp. 3291-3296
-
-
Romero, T.A.1
Tumban, E.2
Jun, J.3
Lott, W.B.4
Hanley, K.A.5
-
27
-
-
34249806006
-
Substitution or deletion mutations between nt 54 and 70 in the 5′ non-coding region of dengue type 2 virus produce variable effects on virus viability
-
Sirigulpanit, W., R. M. Kinney, and V. Leardkamolkarn. 2007. Substitution or deletion mutations between nt 54 and 70 in the 5′ non-coding region of dengue type 2 virus produce variable effects on virus viability. J. Gen. Virol. 88:1748-1752.
-
(2007)
J. Gen. Virol
, vol.88
, pp. 1748-1752
-
-
Sirigulpanit, W.1
Kinney, R.M.2
Leardkamolkarn, V.3
-
28
-
-
2442705213
-
Conserved RNA secondary structures in Flaviviridae genomes
-
Thurner, C., C. Witwer, I. L. Hofacker, and P. F. Stadler. 2004. Conserved RNA secondary structures in Flaviviridae genomes. J. Gen. Virol. 85:1113-1124.
-
(2004)
J. Gen. Virol
, vol.85
, pp. 1113-1124
-
-
Thurner, C.1
Witwer, C.2
Hofacker, I.L.3
Stadler, P.F.4
-
29
-
-
11344282039
-
The flavivirus-conserved pentanucleotide in the 3′ stem-loop of the West Nile virus genome requires a specific sequence and structure for RNA synthesis, but not for viral translation
-
Tilgner, M., T. S. Deas, and P. Y. Shi. 2005. The flavivirus-conserved pentanucleotide in the 3′ stem-loop of the West Nile virus genome requires a specific sequence and structure for RNA synthesis, but not for viral translation. Virology 331:375-386.
-
(2005)
Virology
, vol.331
, pp. 375-386
-
-
Tilgner, M.1
Deas, T.S.2
Shi, P.Y.3
-
30
-
-
3242740948
-
Structure and function of the 3′ terminal six nucleotides of the West Nile virus genome in viral replication
-
Tilgner, M., and P. Y. Shi. 2004. Structure and function of the 3′ terminal six nucleotides of the West Nile virus genome in viral replication. J. Virol. 78:8159-8171.
-
(2004)
J. Virol
, vol.78
, pp. 8159-8171
-
-
Tilgner, M.1
Shi, P.Y.2
-
32
-
-
34250365710
-
Prospects for a dengue virus vaccine
-
Whitehead, S. S., J. E. Blaney, A. P. Durbin, and B. R. Murphy. 2007. Prospects for a dengue virus vaccine. Nat. Rev. Microbiol. 5:518-528.
-
(2007)
Nat. Rev. Microbiol
, vol.5
, pp. 518-528
-
-
Whitehead, S.S.1
Blaney, J.E.2
Durbin, A.P.3
Murphy, B.R.4
-
33
-
-
0037223896
-
A live, attenuated dengue virus type 1 vaccine candidate with a 30-nucleotide deletion in the 3′ untranslated region is highly attenuated and immunogenic in monkeys
-
Whitehead, S. S., B. Falgout, K. A. Hanley, J. E. Blaney, Jr., L. Markoff, and B. R. Murphy. 2003. A live, attenuated dengue virus type 1 vaccine candidate with a 30-nucleotide deletion in the 3′ untranslated region is highly attenuated and immunogenic in monkeys. J. Virol. 77:1653-1657.
-
(2003)
J. Virol
, vol.77
, pp. 1653-1657
-
-
Whitehead, S.S.1
Falgout, B.2
Hanley, K.A.3
Blaney Jr., J.E.4
Markoff, L.5
Murphy, B.R.6
-
34
-
-
33947720028
-
Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): Quantitative RNA structure analysis at single nucleotide resolution
-
Wilkinson, K. A., E. J. Merino, and K. M. Weeks. 2006. Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution. Nat. Protoc. 1:1610-1616.
-
(2006)
Nat. Protoc
, vol.1
, pp. 1610-1616
-
-
Wilkinson, K.A.1
Merino, E.J.2
Weeks, K.M.3
-
35
-
-
0035844132
-
In vitro RNA synthesis from exogenous dengue viral RNA templates requires long range interactions between 5′- and 3′-terminal regions that influence RNA structure
-
You, S., B. Falgout, L. Markoff, and R. Padmanabhan. 2001. In vitro RNA synthesis from exogenous dengue viral RNA templates requires long range interactions between 5′- and 3′-terminal regions that influence RNA structure. J. Biol. Chem. 276:15581-15591.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 15581-15591
-
-
You, S.1
Falgout, B.2
Markoff, L.3
Padmanabhan, R.4
-
36
-
-
0033585015
-
A novel in vitro replication system for dengue virus. Initiation of RNA synthesis at the 3′-end of exogenous viral RNA templates requires 5′- and 3′-terminal complementary sequence motifs of the viral RNA
-
You, S., and R. Padmanabhan. 1999. A novel in vitro replication system for dengue virus. Initiation of RNA synthesis at the 3′-end of exogenous viral RNA templates requires 5′- and 3′-terminal complementary sequence motifs of the viral RNA. J. Biol. Chem. 274:33714-33722.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 33714-33722
-
-
You, S.1
Padmanabhan, R.2
-
37
-
-
13444288088
-
The topology of bulges in the long stem of the flavivirus 3′ stem-loop is a major determinant of RNA replication competence
-
Yu, L., and L. Markoff. 2005. The topology of bulges in the long stem of the flavivirus 3′ stem-loop is a major determinant of RNA replication competence. J. Virol. 79:2309-2324.
-
(2005)
J. Virol
, vol.79
, pp. 2309-2324
-
-
Yu, L.1
Markoff, L.2
-
38
-
-
41849125306
-
Specific requirements for elements of the 5′ and 3′ terminal regions in flavivirus RNA synthesis and viral replication
-
Yu, L., M. Nomaguchi, R. Padmanabhan, and L. Markoff. 2008. Specific requirements for elements of the 5′ and 3′ terminal regions in flavivirus RNA synthesis and viral replication. Virology 374:170-185.
-
(2008)
Virology
, vol.374
, pp. 170-185
-
-
Yu, L.1
Nomaguchi, M.2
Padmanabhan, R.3
Markoff, L.4
-
39
-
-
40649100035
-
West Nile virus genome cyclization and RNA replication require two pairs of long-distance RNA interactions
-
Zhang, B., H. Dong, D. A. Stein, P. L. Iversen, and P. Y. Shi. 2008. West Nile virus genome cyclization and RNA replication require two pairs of long-distance RNA interactions. Virology 373:1-13.
-
(2008)
Virology
, vol.373
, pp. 1-13
-
-
Zhang, B.1
Dong, H.2
Stein, D.A.3
Iversen, P.L.4
Shi, P.Y.5
|