Genetic variability in four wild and two farmed stocks of the Chinese freshwater pearl mussel (Hyriopsis cumingii) estimated by microsatellite DNA markers

Aquaculture

Volumn 287, Issue 3-4, 2009, Pages 286-291

  Li, Jiale ^a   Wang, Guiling ^a   Bai, Zhiyi ^a  

^a SHANGHAI OCEAN UNIVERSITY   (China)

Author keywords

Effective population size; Genetic drift in farmed stocks; Temporal genetic variance

Indexed keywords

ALLELE; COMPARATIVE STUDY; EFFECTIVE POPULATION SIZE; ESTIMATION METHOD; GENETIC DIFFERENTIATION; GENETIC DRIFT; GENETIC MARKER; GENETIC VARIATION; MUSSEL CULTURE; STOCK ASSESSMENT; WILD POPULATION;

ASIA; CHINA; EURASIA; FAR EAST; JIANGXI; POYANG LAKE;

HYRIOPSIS CUMINGII;

EID: 58149466174     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2008.10.032     Document Type: Article

References (39)

1. st tell us?. Trends Ecol. Evol. 20 (2005) 435-440
2. Blake S.G., Blake N.J., Oesterling M.J., and Graves J.E. Genetic divergence and loss of diversity in two cultured populations of the bay scallop, Argopecten irradians (Lamarck, 1819). J. Shellfish Res. 16 (1997) 55-58
3. Carlsson J., Morrison C.L., and Reece K.S. Wild and aquaculture populations of the eastern oyster compared using microsatellites. J. Heredity 97 (2006) 595-598
4. Cornuet J.M., and Luikart G. Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144 (1996) 2001-2014
5. Estoup A., Rousset F., Michalakis Y., Cornuet J.M., Aariamanga M., and Guyomard R. Comparative analysis of microsatellite and allozyme markers: a case study investigating microgeographic differentiation in brown trout (Salmo trutta). Mol. Ecol. 7 (1998) 339-353
6. Excoffier L., Laval G., and Schneider S. Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evol. Bioinform. 1 (2005) 47-50
7. Falconer D.S. Introduction to Quantitative Genetics. 3rd edn. (1989), Longman, New York
8. Frost L.A., Evans B.S., and Jerry D.R. Loss of genetic diversity due to hatchery culture practices in barramundi (Lates calcarifer). Aquaculture 261 (2006) 1056-1064
9. Geist J., and Kuehn R. Genetic diversity and differentiation of central European freshwater pearl mussel (Margaritifera margaritifera L.) populations: implications for conservation and management. Mol. Ecol. 14 (2005) 425-439
10. Goldstein D.B., and Schlotterer C. Microsatellites: Evolution and Applications (1999), Oxford University Press, Oxford
11. Goudet J. FSATA (vers.1.2): a computer program to calculate F-statistics. J. Heredity 85 (1995) 485-486
12. Hedgecock D., Chow V., and Waples R.S. Effective population numbers of shellfish broodstocks estimated from temporal variance in allelic frequencies. Aquaculture 108 (1992) 215-232
13. Hedrick P.W. A standardized genetic differentiation measure. Evolution 59 (2005) 1633-1638
14. Hua D., Guo R.B., Bai Y.H., and Weng H.B. Analysis of genetic diversity in cultured and wild freshwater pearl mussel using RAPD. J. Fish. China 27 (2003) 540-544
15. Lehmann T., Hawley W.A., Grebert H., and Collins F.H. The effective population size of Anopheles gambiae in Kenya: implications for population structure. Mol. Biol. Evol. 15 (1998) 264-276
16. Lewis P.O., and Zaykin D. Genetic Data Analysis (2000). http://hydrodictyon.eeb.uconn.edu/people/plewis/software.php available at http://hydrodictyon.eeb.uconn.edu/people/plewis/software.php
17. Li J.L., Qian R.H., Bao B.L., Wang G.L., and Qi W.D. RAPD analysis on genetic diversity among the stocks of Hyriopsis cumingii from the five large lakes of China. J. Shanghai Fish. Uni. 14 (2005) 1-5
18. Li J.L., Wang G.L., Bei Z.Y., and Yue G.H. Ten polymorphic microsatellites from freshwater pearl mussel, Hyriopsis cumingii. Mol. Ecol. Notes 7 (2007) 1357-1359
19. Liu Y.Y. Economic Fauna of China (Freshwater Mollusks) (1979), China Scientific Book Service, Beijing
20. Liu Z.J., and Cordes J.F. DNA marker technologies and their applications in aquaculture genetics. Aquaculture 238 (2004) 1-37
21. Luikart G., Allendorf F.W., Cornuet J.M., and Sherwin W.B. Distortion of allele frequency distributions provides a test for recent population bottlenecks. J. Heredity 89 (1998) 238-247
22. Muller J., Woll S., Fuchs U., and Seitz A. Genetic interchange of Dreissena polymorpha populations across a canal. Heredity 86 (2001) 103-109
23. Nei M. Molecular Evolutionary Genetics (1987), Columbia University Press, New York
24. Norris A.T., Bradley D.G., and Cunningham E.P. Microsatellite genetic variation between and within farmed and wild Atlantic salmon (Salmo salar) populations. Aquaculture 180 (1999) 247-264
25. Oosterhout C.V., Hutchinson M.F., Wills D.P.M., and Shipley P. MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4 (2004) 535-538
26. Pollak E. A new method for estimating the effective population size from allele frequency changes. Genetics 104 (1983) 531-548
27. Rutten M.J.M., Komen H., Deerenberg R.M., Siwek M., and Bovenhuis H. Genetic characterization of four strains of Nile tilapia (Oreochromis niloticus L.) using microsatellite markers. Anim. Genet. 35 (2004) 93-97
28. Sekino M., Sugaya T., Hara M., and Taniguchi N. Relatedness inferred from microsatellite genotypes as a tool for broodstock management of Japanese flounder Paralichthys olivaceus. Aquaculture 233 (2004) 163-172
29. Tallmon D.A., Luikart G., and Beaumont M.A. Comparative evaluation of a new effective population size estimator based on approximate bayesian computation. Genetics 167 (2004) 977-988
30. Thrower F., Guthrie C., Nielsen J., and Joyce J. A comparison of genetic variation between an anadromous steelhead, Oncorhynchus mykiss, population and seven derived populations sequestered in freshwater for 70 years. Environ. Biol. Fisches 69 (2004) 111-125
31. Wang J. A pseudo-likelihood method for estimating effective population size from temporally spaced samples. Genet. Res. 78 (2001) 243-257
32. Wang G.L., Wang J.J., and Li J.L. Preliminary study on applicability of microsatellite primers developed from Crassostrea gigas to genomic analysis of Hyriopsis cumingii. Journal of Fisheries of China 1 (2006) 30-38
33. Waples R.S. A generalized approach for estimating effective population size from temporal changes in allele frequency. Genetics 121 (1989) 379-391
34. Weber J.L., and May P.E. Abundant class of human DNA polymorphisms which can be typed using the polymerase chain-reaction. Am. J. Hum. Genet. 44 (1989) 388-396
35. Weir B.S., and Cockerham C.C. Estimating F-statistics for the analysis of population structure. Evolution 38 (1984) 1358-1370
36. Yeh F., Yang R.C., and Boyle T. POPGENE v3.2 (1999). http://www.ualberta.ca/~fyeh/download.htm available at http://www.ualberta.ca/~fyeh/download.htm
37. Zhang Z.W., Cao Z.M., Yang H., Wang J.L., Cao J.L., Han Y.P., and Wu T.T. Microsatellites analysis on genetic variation between wild and cultured populations of Ctenopharyngodon idella. Zool. Res. 27 (2004) 189-196
38. Zhang Q., Allen Jr. S.K., and Reece K.S. Genetic variation in wild and hatchery stocks of Suminoe oyster (Crassostrea ariakensis) assessed by PCR-RFLP and microsatellite markers. Mar. Biotechnol. 7 (2005) 588-599
39. Zhu Z.Y., Lin G., Lo L.C., Xu Y.X., Renee C., and Yue G.H. Genetic analyses of Asian seabass stocks using novel polymorphic microsatellites. Aquaculture 256 (2006) 167-173