-
1
-
-
0002006297
-
Are there pathways for protein folding?
-
Levinthal C. Are there pathways for protein folding?. J. Chim. Phys. 65 (1968) 44-45
-
(1968)
J. Chim. Phys.
, vol.65
, pp. 44-45
-
-
Levinthal, C.1
-
2
-
-
0030626588
-
The Levinthal paradox: Yesterday and today
-
Karplus M. The Levinthal paradox: Yesterday and today. Fold. Des. 2 (1997) S69-75
-
(1997)
Fold. Des.
, vol.2
-
-
Karplus, M.1
-
5
-
-
0009586942
-
Understanding protein folding via free-energy surfaces from theory and experiment
-
Dinner A.R., Sali A., Smith L.J., Dobson C.M., and Karplus M. Understanding protein folding via free-energy surfaces from theory and experiment. Trends Biochem. Sci. 25 (2000) 331-339
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 331-339
-
-
Dinner, A.R.1
Sali, A.2
Smith, L.J.3
Dobson, C.M.4
Karplus, M.5
-
6
-
-
0037686252
-
The present view of the mechanism of protein folding
-
Daggett V., and Fersht A. The present view of the mechanism of protein folding. Nature Rev. Mol. Cell Biol. 4 (2003) 497-502
-
(2003)
Nature Rev. Mol. Cell Biol.
, vol.4
, pp. 497-502
-
-
Daggett, V.1
Fersht, A.2
-
7
-
-
0028947257
-
Funnels, pathways, and the energy landscape of protein folding: A synthesis
-
Bryngelson J.D., Onuchic J.N., Socci N.D., and Wolynes P.G. Funnels, pathways, and the energy landscape of protein folding: A synthesis. Proteins: Structure, Function, and Genetics 21 (2004) 167-195
-
(2004)
Proteins: Structure, Function, and Genetics
, vol.21
, pp. 167-195
-
-
Bryngelson, J.D.1
Onuchic, J.N.2
Socci, N.D.3
Wolynes, P.G.4
-
8
-
-
0025370815
-
Dominant forces in protein folding
-
Dill K.A. Dominant forces in protein folding. Biochemistry 29 (1990) 7133-7155
-
(1990)
Biochemistry
, vol.29
, pp. 7133-7155
-
-
Dill, K.A.1
-
9
-
-
34347375915
-
The protein folding problem: When will it be solved?
-
Dill K.A., Ozkan S.B., Weikl T.R., Chodera J.D., and Voelz V.A. The protein folding problem: When will it be solved?. Curr. Opin. Struct. Biol. 17 (2007) 342-346
-
(2007)
Curr. Opin. Struct. Biol.
, vol.17
, pp. 342-346
-
-
Dill, K.A.1
Ozkan, S.B.2
Weikl, T.R.3
Chodera, J.D.4
Voelz, V.A.5
-
13
-
-
33847219928
-
Natural process-Natural selection
-
Sharma V., and Annila A. Natural process-Natural selection. Biophys. Chem. 127 (2007) 123-128
-
(2007)
Biophys. Chem.
, vol.127
, pp. 123-128
-
-
Sharma, V.1
Annila, A.2
-
14
-
-
52949104099
-
Natural selection for least action
-
10.1098/rspa.2008.0178
-
Kaila V.R.I., and Annila A. Natural selection for least action. Proc. R. Soc. A. (2008) 10.1098/rspa.2008.0178
-
(2008)
Proc. R. Soc. A.
-
-
Kaila, V.R.I.1
Annila, A.2
-
15
-
-
36148994321
-
Natural distribution
-
Grönholm T., and Annila A. Natural distribution. Math. Biosci. 210 (2007) 659-667
-
(2007)
Math. Biosci.
, vol.210
, pp. 659-667
-
-
Grönholm, T.1
Annila, A.2
-
17
-
-
41449094821
-
The driving force behind genomic diversity
-
arXiv:0807.0892
-
Jaakkola S., El-Showk S., and Annila A. The driving force behind genomic diversity. Biophys. Chem. 134 (2008) 232-238. arXiv:0807.0892
-
(2008)
Biophys. Chem.
, vol.134
, pp. 232-238
-
-
Jaakkola, S.1
El-Showk, S.2
Annila, A.3
-
19
-
-
57649115337
-
Roots of diversity relations
-
10.1155/2008/654672
-
Würtz P., and Annila A. Roots of diversity relations. J. Biophys. (2008) 10.1155/2008/654672
-
(2008)
J. Biophys.
-
-
Würtz, P.1
Annila, A.2
-
21
-
-
11944266539
-
Information theory and statistical mechanics
-
Jaynes E.T. Information theory and statistical mechanics. Phys. Rev. 106 (1957) 620-630
-
(1957)
Phys. Rev.
, vol.106
, pp. 620-630
-
-
Jaynes, E.T.1
-
23
-
-
0003142990
-
Life and the production of entropy
-
Ulanowicz R.E., and Hannon B.M. Life and the production of entropy. Proc. R. Soc. B 232 (1987) 181-192
-
(1987)
Proc. R. Soc. B
, vol.232
, pp. 181-192
-
-
Ulanowicz, R.E.1
Hannon, B.M.2
-
26
-
-
0002655873
-
Life as a manifestation of the second law of thermodynamics
-
Schneider E.D., and Kay J.J. Life as a manifestation of the second law of thermodynamics. Math. Comp. Model. 19 (1994) 25-48
-
(1994)
Math. Comp. Model.
, vol.19
, pp. 25-48
-
-
Schneider, E.D.1
Kay, J.J.2
-
27
-
-
0032998066
-
Thermodynamics in the present progressive mode and its role in the context of the origin of life
-
Matsuno K., and Swenson R. Thermodynamics in the present progressive mode and its role in the context of the origin of life. BioSystems 51 (1999) 53-61
-
(1999)
BioSystems
, vol.51
, pp. 53-61
-
-
Matsuno, K.1
Swenson, R.2
-
28
-
-
0034100037
-
The nature of the organism: Life takes on a life of its own
-
Brooks D.R. The nature of the organism: Life takes on a life of its own. Proc. N.Y. Acad. Sci. 901 (2000) 257-265
-
(2000)
Proc. N.Y. Acad. Sci.
, vol.901
, pp. 257-265
-
-
Brooks, D.R.1
-
29
-
-
0011917907
-
life and the production of entropy
-
Lorenz R.D., and Planets. life and the production of entropy. Int. J. Astrobiol. 1 (2002) 3-13
-
(2002)
Int. J. Astrobiol.
, vol.1
, pp. 3-13
-
-
Lorenz, R.D.1
Planets2
-
30
-
-
0037462837
-
Information theory explanation of the fluctuation theorem, maximum entropy production and self-organized criticality in non-equilibrium stationary states
-
Dewar R. Information theory explanation of the fluctuation theorem, maximum entropy production and self-organized criticality in non-equilibrium stationary states. J. Phys. A 36 (2003) 631-641
-
(2003)
J. Phys. A
, vol.36
, pp. 631-641
-
-
Dewar, R.1
-
33
-
-
0003699033
-
-
Addison-Wesley, Reading, MA (chapters 44-46)
-
Feynman R., Leighton R., and Sands M. The Feynman Lectures on Physics vol. I (1963), Addison-Wesley, Reading, MA (chapters 44-46)
-
(1963)
The Feynman Lectures on Physics
, vol.I
-
-
Feynman, R.1
Leighton, R.2
Sands, M.3
-
35
-
-
0029831068
-
An information theory model of hydrophobic interactions
-
Hummer G., Garde S., Garcia A.E., Pohorille A., and Prat L.R. An information theory model of hydrophobic interactions. Proc. Natl. Acad. Sci. USA 93 (1996) 8951-8955
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 8951-8955
-
-
Hummer, G.1
Garde, S.2
Garcia, A.E.3
Pohorille, A.4
Prat, L.R.5
-
36
-
-
0032847748
-
Elementary steps in protein folding
-
Bieri O., and Kiefhaber T. Elementary steps in protein folding. Biol. Chem. 380 (1999) 923-929
-
(1999)
Biol. Chem.
, vol.380
, pp. 923-929
-
-
Bieri, O.1
Kiefhaber, T.2
-
41
-
-
33947327637
-
Protein folding and unfolding
-
Fersht A.R., and Daggett V. Protein folding and unfolding. Cell 108 (2002) 1-20
-
(2002)
Cell
, vol.108
, pp. 1-20
-
-
Fersht, A.R.1
Daggett, V.2
-
42
-
-
18744366086
-
Protein folding pathways from replica exchange simulations and a kinetic network model
-
Andrec M., Felts A.K., Gallicchio E., and Levy R.M. Protein folding pathways from replica exchange simulations and a kinetic network model. Proc. Natl. Acad. Sci. USA 102 (2005) 6801-6806
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 6801-6806
-
-
Andrec, M.1
Felts, A.K.2
Gallicchio, E.3
Levy, R.M.4
-
45
-
-
0030910349
-
GroEL-mediated protein folding
-
Horwich F. GroEL-mediated protein folding. Protein Sci. 6 (1997) 743-760
-
(1997)
Protein Sci.
, vol.6
, pp. 743-760
-
-
Horwich, F.1
-
47
-
-
58149344037
-
-
P. Waage, C.M. Guldberg, Forhandlinger 35, Videnskabs-Selskabet i Christiana, Christiana, 1864
-
P. Waage, C.M. Guldberg, Forhandlinger 35, Videnskabs-Selskabet i Christiana, Christiana, 1864
-
-
-
-
48
-
-
0003490410
-
-
Westview, Cambridge, MA
-
Strogatz S.H. Nonlinear Dynamics and Chaos with Applications to Physics, Biology, Chemistry and Engineering (2000), Westview, Cambridge, MA
-
(2000)
Nonlinear Dynamics and Chaos with Applications to Physics, Biology, Chemistry and Engineering
-
-
Strogatz, S.H.1
-
49
-
-
0023079867
-
Function and dynamics of myoglobin
-
Frauenfelder H. Function and dynamics of myoglobin. Ann. N.Y. Acad. Sci. 504 (1987) 152-167
-
(1987)
Ann. N.Y. Acad. Sci.
, vol.504
, pp. 152-167
-
-
Frauenfelder, H.1
-
50
-
-
0032484096
-
Single-molecule enzymatic dynamics
-
Lu H.P., Xun L., and Xie S. Single-molecule enzymatic dynamics. Science 282 (1998) 1877-1882
-
(1998)
Science
, vol.282
, pp. 1877-1882
-
-
Lu, H.P.1
Xun, L.2
Xie, S.3
-
51
-
-
0003997946
-
-
Dover Publications, New York
-
Fermi E. Thermodynamics (1956), Dover Publications, New York
-
(1956)
Thermodynamics
-
-
Fermi, E.1
-
52
-
-
0002298459
-
Recherches mathématiques sur la loi d'accroissement de la population
-
Verhulst P.F. Recherches mathématiques sur la loi d'accroissement de la population. Nouv. Mém. Acad. Roy. Sci. Belleslett. Bruxelles 18 (1845) 1-38
-
(1845)
Nouv. Mém. Acad. Roy. Sci. Belleslett. Bruxelles
, vol.18
, pp. 1-38
-
-
Verhulst, P.F.1
-
53
-
-
34548076110
-
Sampling of states for estimating the folding funnel entropy and energy landscape of a model alpha-helical hairpin peptide
-
Chapagain P.P., Parra J.L., Gerstman B.S., and Liu Y. Sampling of states for estimating the folding funnel entropy and energy landscape of a model alpha-helical hairpin peptide. J. Chem. Phys. 127 (2007) 075103
-
(2007)
J. Chem. Phys.
, vol.127
, pp. 075103
-
-
Chapagain, P.P.1
Parra, J.L.2
Gerstman, B.S.3
Liu, Y.4
-
58
-
-
0002224909
-
-
Schopf T.J.M. (Ed), Freeman, Cooper, San Francisco
-
Eldredge N., and Gould S.J. In: Schopf T.J.M. (Ed). Models in Paleobiology (1972), Freeman, Cooper, San Francisco 82-115
-
(1972)
Models in Paleobiology
, pp. 82-115
-
-
Eldredge, N.1
Gould, S.J.2
-
60
-
-
33750989571
-
Biologie et thermodynamique des phenomenes irreversibles
-
Prigogine I., and Wiame J.M. Biologie et thermodynamique des phenomenes irreversibles. Experientia 2 (1946) 451-453
-
(1946)
Experientia
, vol.2
, pp. 451-453
-
-
Prigogine, I.1
Wiame, J.M.2
-
63
-
-
0039368282
-
Cross relaxation by single spin flips in silver at nanokelvin temperatures
-
Oja A.S., Annila A.J., and Takano Y. Cross relaxation by single spin flips in silver at nanokelvin temperatures. Phys. Rev. Lett. 65 (1990) 1921-1924
-
(1990)
Phys. Rev. Lett.
, vol.65
, pp. 1921-1924
-
-
Oja, A.S.1
Annila, A.J.2
Takano, Y.3
-
64
-
-
0033200063
-
Protein misfolding, evolution and disease
-
Dobson C.M. Protein misfolding, evolution and disease. Trends Biochem. Sci. 9 (1999) 329-332
-
(1999)
Trends Biochem. Sci.
, vol.9
, pp. 329-332
-
-
Dobson, C.M.1
-
65
-
-
0015859467
-
Principles that govern the folding of protein chains
-
Anfinsen C.B. Principles that govern the folding of protein chains. Science 181 (1973) 223-230
-
(1973)
Science
, vol.181
, pp. 223-230
-
-
Anfinsen, C.B.1
-
66
-
-
34247863735
-
Unbiased cold denaturation: Low- and high-temperature unfolding of yeast frataxin under physiological conditions
-
Pastore A., Martin S.R., Politou A., Kondapalli K.C., Stemmler T., and Temussi P.A. Unbiased cold denaturation: Low- and high-temperature unfolding of yeast frataxin under physiological conditions. J. Am. Chem. Soc. 129 (2007) 5374-5375
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 5374-5375
-
-
Pastore, A.1
Martin, S.R.2
Politou, A.3
Kondapalli, K.C.4
Stemmler, T.5
Temussi, P.A.6
-
68
-
-
52249094374
-
From producing entropy to reducing gradients to spreading energy: Understanding the essence of the second law
-
Meeting the entropy challenge: An International Thermodynamics Symposium in Honor and Memory of Professor Joseph H. Keenan. Beretta G.P., Ghoniem A., and Hatsopoulos G. (Eds), Cambridge, MA
-
Sagan D. From producing entropy to reducing gradients to spreading energy: Understanding the essence of the second law. In: Beretta G.P., Ghoniem A., and Hatsopoulos G. (Eds). Meeting the entropy challenge: An International Thermodynamics Symposium in Honor and Memory of Professor Joseph H. Keenan. AIP Conference Proceedings vol. 1033 (2007), Cambridge, MA 194-197
-
(2007)
AIP Conference Proceedings
, vol.1033
, pp. 194-197
-
-
Sagan, D.1
-
71
-
-
0000433758
-
The nuclear magnetic resonance spectrum of ribonuclease
-
Saunders M., Wishnia A., and Kirkwood J.G. The nuclear magnetic resonance spectrum of ribonuclease. J. Am. Chem. Soc. 79 (1957) 3289-3290
-
(1957)
J. Am. Chem. Soc.
, vol.79
, pp. 3289-3290
-
-
Saunders, M.1
Wishnia, A.2
Kirkwood, J.G.3
-
73
-
-
0001616080
-
Replica-exchange molecular dynamics method for protein folding
-
Sugita Y., and Okamoto Y. Replica-exchange molecular dynamics method for protein folding. Chem. Phys. Lett. 314 (1999) 141-151
-
(1999)
Chem. Phys. Lett.
, vol.314
, pp. 141-151
-
-
Sugita, Y.1
Okamoto, Y.2
-
74
-
-
0037305918
-
Multiplexed-replica exchange molecular dynamics method for protein folding simulation
-
Rhee Y.M., and Pande V.S. Multiplexed-replica exchange molecular dynamics method for protein folding simulation. Biophys. J. 84 (2003) 775-786
-
(2003)
Biophys. J.
, vol.84
, pp. 775-786
-
-
Rhee, Y.M.1
Pande, V.S.2
-
75
-
-
0027692037
-
Complexity of protein folding
-
Fraenkel A.S. Complexity of protein folding. Bull. Math Biol. 55 (1993) 1199-1210
-
(1993)
Bull. Math Biol.
, vol.55
, pp. 1199-1210
-
-
Fraenkel, A.S.1
-
78
-
-
33847738192
-
-
The University of Chicago Press, Chicago
-
Schneider E.D., and Sagan D. Into the Cool: Energy Flow, Thermodynamics, and Life (2005), The University of Chicago Press, Chicago
-
(2005)
Into the Cool: Energy Flow, Thermodynamics, and Life
-
-
Schneider, E.D.1
Sagan, D.2
-
79
-
-
0034161476
-
Protein-length distributions for the three domains of life
-
Zhang J. Protein-length distributions for the three domains of life. Trends Genet. 16 (2000) 107-109
-
(2000)
Trends Genet.
, vol.16
, pp. 107-109
-
-
Zhang, J.1
|