An information theory model of hydrophobic interactions

Proceedings of the National Academy of Sciences of the United States of America

Volumn 93, Issue 17, 1996, Pages 8951-8955

  Hummer, Gerhard ^a   Garde, Shekhar ^a,d   García, Angel E ^a   Pohorille, Andrew ^b,c   Pratt, Lawrence R ^a  

^a LOS ALAMOS NATIONAL LABORATORY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c NASA AMES RESEARCH CENTER   (United States)

^d University of Delaware   (United States)

Author keywords

biomolecule solution structure; hydrophobic effects; solvation

Indexed keywords

BIOPOLYMER; SOLVENT;

ARTICLE; HYDROPHOBICITY; MOLECULAR INTERACTION; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN STRUCTURE; SOLUBILITY; THERMODYNAMICS;

EID: 0029831068     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.93.17.8951     Document Type: Article

References (81)

1. Pierotti, R. A. (1963) J. Phys. Chem. 67, 1840-1845.
2. Stillinger, F. H. (1973) J. Solut. Chem. 2, 141-158.
3. Pratt, L. R. & Chandler, D. (1977) J. Chem. Phys. 67, 3683-3704.
4. Pratt, L. R. & Chandler, D. (1980) J. Chem. Phys. 73, 3434-3441.
5. Pratt, L. R. (1985) Annu. Rev: Phys. Chem. 36, 433-449.
6. Lazaridis, T. & Paulaitis, M. E. (1992) J. Phys. Chem. 96, 3847-3855.
7. Lazaridis, T. & Paulaitis, M. E. (1993) Fluid Phase Equilibria 83, 43-49.
8. Lazaridis, T. & Paulaitis, M. E. (1993) J. Phys. Chem. 97, 5789-5790.
9. Lazaridis, T. & Paulaitis, M. E. (1994) J. Phys. Chem. 98, 635-642.
10. Paulaitis, M. E., Ashbaugh, H. S. & Garde, S. (1994) Biophys, Chem. 51, 349-357.
11. Watanabe, K. & Andersen, H. C. (1986) J. Phys. Chem 90, 795-802.
12. Pohorille, A. & Pratt, L. R. (1990) J. Am. Chem. Soc 112, 5066-5074.
13. Pratt, L. R. & Pohorille, A. (1992) Proc. Natl. Acad. Sci. USA 89, 2995-2999.
14. Madan, B. & Lee, B. (1994) Biophys. Chem. 51, 279-289.
15. Chandler, D. (1993) Phys. Rev. E 48, 2898-2905.
16. Smith, D. E. & Haymet, A. D. J. (1993) J. Chem. Phys. 98, 6445-6454.
17. Head-Gordon, T. & Stillinger, F. H. (1993) J. Chem. Phys. 98, 3313-3327.
18. Head-Gordon, T. (1994) Chem. Phys. Lett. 227, 215-220.
19. Head-Gordon, T. (1995) J. Am. Chem. Soc. 117, 501-507.
20. Wallqvist, A. & Berne. B. J. (1995) J. Phys. Chem. 99, 2885-2892.
21. Wallqvist, A. & Berne, B. J. (1995) J. Phys. Chem. 99, 2893-2899.
22. Franks, F. (1975) in Water. A Comprehensive Treatise, ed. Franks, F. (Plenum, New York), Vol. 4, pp. 1-94.
23. Richards, F. M. (1977) Annu. Rev. Biophys. Bioeng. 6, 151-176.
24. Edsall, J. T. & McKenzie, H. A. (1983) Adv. Biophys. 16, 53-183.
25. Dill, K. A. (1990) Biochemistry 29, 7133-7155.
26. Blokzijl, W. & Engberts, J. B. F. N. (1993) Angew. Chem. Int. Ed. Engl. 32, 1545-1579.
27. Kauzmann, W. (1959) Adv. Prot. Chem. 14, 1-63.
28. Hermann, R. B. (1977) Proc. Natl. Acad. Sci. USA 74, 4144-4145.
29. Eisenberg, D., Weiss, R. M., Terwilliger, T. C. & Wilcox, W. (1982) Faraday Symp. Chem. Soc. 17, 109-120.
30. Eisenberg, D. & McLachlan, A. D. (1986) Nature (London) 319, 199-203.
31. Wodak, S. J. & Rooman, M. J. (1993) Curr. Opin. Struct. Biol. 3, 247-259.
32. Privalov, P. L. (1990) Crit. Rev. Biochem. Mol. Biol. 25, 281-305.
33. Makhatadze, G. I. & Privalov, P. L. (1993) J. Mol. Biol. 232, 639-659.
34. Privalov, P. L. & Makhatadze, G. I. (1993) J. Mol. Biol. 232, 660-679.
35. Peng, X., Jonas, J. & Suva, J. L. (1994) Biochemistry 33, 8323-8329.
36. Zhang, J., Peng, X., Jonas, A. & Jonas, J. (1995) Biochemistry 34, 8631-8641.
37. Jonas, J. & Jonas, A. (1994) Annu. Rev. Biophys. Biomol. Struct. 23, 287-318.
38. Cléry, C., Renault, F. & Masson, P. (1995) FEBS Lett. 370, 212-214.
39. Vidugiris, G. J. A., Markley, J. L. & Royer, C. A. (1995) Biochemistry 34, 4909-4912.
40. Colombo, M. F., Rau, D. C. & Parsegian, V. A. (1992) Science 256, 655-659.
41. Colombo, M. F., Rau, D. C. & Parsegian, V. A. (1994) Proc. Natl. Acad. Sci. USA 91, 10517-10520.
42. Rand, R. P., Fuller, N. L., Butko, P., Francis, G. & Nicholls, P. (1993) Biochemistry 32, 5925-5929.
43. Bellelli, A., Brancaccio, A. & Brunori, M. (1993) J. Biol. Chem. 268, 4742-4744.
44. Robinson, C. R. & Sligar, S. G. (1993) J. Mol. Biol. 234, 302-306.
45. Robinson, C. R. & Sugar, S. G. (1994) Biochemistry 33, 3787-3793.
46. Robinson, C. R. & Sugar, S. G. (1995) Proc. Natl. Acad. Sci. USA 92, 3444-3448.
47. Di Primo. C., Sligar, S. G., Hoa, G. H. B. & Douzou. P. (1992) FEBS Lett. 312, 252-254.
48. Garner, M. M. & Rau, D. C. (1995) EMBO J. 14, 1257-1263.
49. Sidorova, N. Y. & Rau. D. C. (1995) Biopolymers 35, 377-384.
50. Kauzmann, W. (1987) Nature (London) 325, 763-764.
51. Shortle, D. (1993) Curr. Opin. Struct. Biol. 3, 66-74.
52. Baldwin, R. L. (1993) Curr. Opin. Struct. Biol. 3, 84-91.
53. Pratt, L. R. & Pohorille, A. (1993) in Association of Europeam Biophysical Societies Conference Proceedings on Water-Biomalecule Interactions, eds. Palma, M. U., Palma-Vittorelli, M. B. & Parak, F. (Societá Italiana DiFisica, Bologna, Italy), Vol. 43, pp. 261-268.
54. Maiorov, V. N. & Crippen, G. M. (1992) J. Mol. Biol. 227, 876-888.
55. Shore, J. E. & Johnson, R. W. (1980) IEEE Trans. Information Theory IT-26, 26-37.
56. Jaynes. E. T. (1983) in E. T. Jaynes: Papers on Probability, Statistics and Statistical Physics, ed. Rosenkrantz, R. D. (Reidel, Dordrecht, The Netherlands), pp. 315-336.
57. Hummer, G., Pratt, L. R. & García, A. E. (1995) J. Phys. Chem. 99, 14188-14194.
58. Berendsen, H. J. C., Postma, J. P. M., van Gunsteren, W. F. & Hermans, J. (1981) in Intermolecular Forces: Proceedings of the 14th Jerusalem Symposium on Quantum Chemistry and Biochemistry, ed. Pullman, B. (Reidel, Dordrecht, The Netherlands), pp. 331-342.
59. Hill, T. L. (1958) J. Chem. Phys. 28, 1179-1182.
60. Hummer, G., Pratt, L. R. & García. A. E. (1996) J. Phys. Chem. 100, 1206-1215.
61. Garde, S., Hummer, G., Garcia, A. E., Pratt, L. R. & Paulaitis, M. E. (1996) Phys. Rev. E 53, R4310-R4313.
62. Beglov, D. & Roux, B. (1994) J. Chem. Phys. 100, 9050-9063.
63. Chandler, D., Weeks, J. D. & Andersen, H. C. (1983) Science 220, 787-794.
64. Sharp, K. A., Nicholls, A., Fine, R. F. & Honig, B. (1991) Science 252, 106-109.
65. Nicholls, A., Sharp, K. A. & Honig, B. (1991) Proteins Struct. Funct. Genet. 11, 281-296.
66. Sharp, K. A., Nicholls, A., Friedinan, R. & Honig, B. (1991) Biophys. Chem. 30, 9686-9697. Sitkoff, D., Sharp, K. A. & Honig, B. (1994) Biophys. Chem. 51, 397-409.
67. Sharp, K. A., Nicholls, A., Friedinan, R. & Honig, B. (1991) Biophys. Chem. 30, 9686-9697. Sitkoff, D., Sharp, K. A. & Honig, B. (1994) Biophys. Chem. 51, 397-409.
68. Kumar, S. K., Szleifer, I., Sharp, K., Rossky, P. J., Friedman, R. & Honig, B. (1995) J. Phys. Chem. 99, 8382-8391.
69. Holtzer, A. (1992) Biopolymers 32, 711-715.
70. Holtzer, A. (1994) Biopolymers 34, 315-320.
71. Irisa, M., Nagayama, K. & Hirata, F. (1993) Chem. Phys. Lett. 207, 430-435.
72. Ben Naim, A. & Mazo, R. M. (1993) J. Phys. Chem. 97, 10829-10834.
73. Lee, B. (1993) Prot. Sci. 2, 733-738.
74. Tunon, I., Silla, E. & Pascualahuir, J. L. (1994) J. Phys. Chem. 98, 377-379.
75. Giesen, D. J., Cramer, C. J. & Truhlar, D. G. (1994) J. Phys. Chem. 98, 4141-4147.
76. Simonson, T. & Brünger, A. T. (1994) J. Phys. Chem. 98, 4683-4694.
77. Lee, B. (1994) Biophys. Chem. 51, 263-269.
78. Ringe, D. (1995) Curr. Opin. Struct. Biol. 5, 825-829.
79. Eriksson, A. E., Baase, W. A., Zhang, X. J., Heinze, D. W., Blaber, M., Baldwin, E. P. & Matthews, B. W. (1992) Science 255, 178-183.
80. Ludemann, S., Schreiber, H., Abseher, R. & Steinhauser, O. (1996) J. Chem. Phys. 104, 286-295.
81. Callaway, D. J. E. (1996) Phys. Rev. E 53, 3738-3744.