A computational approach to characterizing bond linkages of glycan isomers using matrix-assisted laser desorption/ionization tandem time-of-flight mass spectrometry

Rapid Communications in Mass Spectrometry

Volumn 22, Issue 22, 2008, Pages 3561-3569

  Sheng, Quanhu ^a,b,c   Mechref, Yehia ^b   Li, Yixue ^a   Novotny, Milos V ^b   Tang, Haixu ^b,c  

^a Shanghai Jiao Tong University Affiliated Sixth People s Hospital   (China)

^b INDIANA UNIVERSITY   (United States)

^c INDIANA UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DESORPTION; MASS SPECTROMETERS; MASS SPECTROMETRY; POLYSACCHARIDES;

BRANCHING STRUCTURES; COMPUTATIONAL APPROACH; GLYCANS; GLYCOSIDIC BOND; HIGHLY-CORRELATED; MATRIX ASSISTED LASER DESORPTION IONIZATION; MATRIXASSISTED LASER DESORPTION-IONIZATION (MALDI); SEQUENCE VARIATIONS; TANDEM MASS SPECTRA; TIME OF FLIGHT MASS SPECTROMETRY;

ISOMERS;

POLYSACCHARIDE;

ARTICLE; CHEMISTRY; EVALUATION; INFORMATION PROCESSING; INTERNET; ISOMERISM; MASS SPECTROMETRY; METHODOLOGY; TANDEM MASS SPECTROMETRY;

AUTOMATIC DATA PROCESSING; INTERNET; ISOMERISM; POLYSACCHARIDES; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TANDEM MASS SPECTROMETRY;

EID: 58149347455     PISSN: 09514198     EISSN: 10970231     Source Type: Journal    
DOI: 10.1002/rcm.3765     Document Type: Article

References (30)

1. Freeze HH. Nat. Rev. Genet. 2006; 7: 537.
2. Varki A, Cummings R, Esko J, Freeze H, Hart G, Marth J. Essentials of Glycobiology. Cold Spring Harbor Laboratory Press: Cold Spring Harbor, 1999.
3. Freeze HH, Aebi M. Curr. Opin. Struct. Biol. 2005; 15: 490.
4. Dwek RA. Chem. Rev. 1996; 96: 683.
5. Mechref Y, Novotny MV. Chem. Rev. 2002; 102: 321.
6. Mechref Y, Novotny MV, Krishnan C. Anal. Chem. 2003; 75: 4895.
7. Zaia J. Mass Spectrom. Rev. 2004; 23: 161.
8. Novotny MV, Mechref Y. J. Sep. Sci. 2005; 28: 1956.
9. Mechref Y, Kang P, Novotny MV. Rapid Commun. Mass Spectrom. 2006; 20: 1381.
10. Mechref Y, Novotny MV. J. Chromatogr. B 2006; 841: 65.
11. Joshi HJ, Harrison MJ, Schulz BL, Cooper CA, Packer NH, Karlsson NG. Proteomics 2004; 4: 1650.
12. Lohmann KK, von der Lieth CW. Nucleic Acids Res. 2004; 32: W261.
13. Loss A, Bunsmann P, Bohne A, Loss A, Schwarzer E, Lang E, von der Lieth CW. Nucleic Acids Res. 2002; 30: 405.
14. Cooper CA, Joshi HJ, Harrison MJ, Wilkins MR, Packer NH. Nucleic Acids Res. 2003; 31: 511.
15. Raman R, Venkataraman M, Ramakrishnan S, Lang W, Raguram S, Sasisekharan R. Glycobiology 2006; 16: 82R.
16. Shan B, Zhang K, Ma B, Zhang C, Lajoie G. An algorithm for determining glycan structures from MS/MS spectra. In Advances in Bioinformatics and Its Applications. World Scientific: Singapore, 2005.
17. Tang H, Mechref Y, Novotny MV. Bioinformatics 2005; 21: i431.
18. Ethier M, Figeys D, Perreault H. Methods Mol. Biol. 2006; 328: 187.
19. Shan B, Ma B, Zhang K, Lajoie G. Complexities and Algorithms for Glycan Structure Sequencing using Tandem Mass Spectrometry, Asia-Pacific Bioinformatics Conference (APBC), Hong Kong, 2007; 297.
20. Lapadula AJ, Hatcher PJ, Hanneman AJ, Ashline DJ, Zhang H, Reinhold VN. Anal. Chem. 2005; 77: 6271.
21. Ashline DJ, Lapadula AJ, Liu YH, Lin M, Grace M, Pramanik B, Reinhold VN. Anal. Chem. 2007; 79: 3830.
22. Available: http://www.proteomecommons.org/dev/dfs/examples/iu-glycomics/.
23. Available: http://www.proteomecommons.org.
24. Kang P, Mechref Y, Klouckova I, Novotny MV. Rapid Commun. Mass Spectrom. 2005; 19: 3421.
25. Kang P, Mechref Y, Novotny MV. Rapid Commun. Mass Spectrom. 2008; 22: 721.
26. Available: http://ggdb.informatics.indiana.edu:8080/glycanview.
27. Kang P, Mechref Y, Kyselova Z, Goetz JA, Novotny MV. Anal. Chem. 2007; 79: 6064.
28. Alvarez-Manilla G, Warren NL, Abney T, Atwood J III, Azadi P, York WS, Pierce M, Orlando R. Glycobiology 2007; 17: 677.
29. Devakumar A, Mechref Y, Kang P, Novotny MV, Reilly JP. Rapid Commun. Mass Spectrom. 2007; 21: 1452.
30. Domon B, Costello CE. Glycoconjugate J. 1988; 5: 397.