메뉴 건너뛰기




Volumn 130, Issue 3, 2007, Pages 227-239

A statistical model for dissecting genomic imprinting through genetic mapping

Author keywords

EM algorithm; Genomic Imprinting; Inbred Lines; Maximum likelihood; Quantitative trait loci

Indexed keywords

ALGORITHM; ANIMAL; ARTICLE; BIOLOGICAL MODEL; BODY WEIGHT; CHROMOSOME MAP; CROSS BREEDING; GENETIC PROCEDURES; GENOME; GENOME IMPRINTING; HUMAN; METHODOLOGY; MOUSE; QUANTITATIVE TRAIT LOCUS; STATISTICAL MODEL;

EID: 34250335974     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10709-006-9101-x     Document Type: Article
Times cited : (19)

References (46)
  • 1
    • 0035368518 scopus 로고    scopus 로고
    • Parent-offspring coadaptation and the dual genetic control of maternal care
    • Agrawal AF, Brodie ED III, Brown J (2001) Parent-offspring coadaptation and the dual genetic control of maternal care. Science 292:1710-1712
    • (2001) Science , vol.292 , pp. 1710-1712
    • Agrawal, A.F.1    Brodie III, E.D.2    Brown, J.3
  • 2
    • 0033824259 scopus 로고    scopus 로고
    • Genomic imprinting in plants: Observations and evolutionary implications
    • Alleman M, Doctor J (2000) Genomic imprinting in plants: observations and evolutionary implications. Plant Mol Biol 43:147-161
    • (2000) Plant Mol Biol , vol.43 , pp. 147-161
    • Alleman, M.1    Doctor, J.2
  • 4
    • 0009874460 scopus 로고    scopus 로고
    • Association of insulin gene VNTR polymorphism with polycystic ovary syndrome
    • Bennett ST, Todd JA, Waterworth DM, Franks S, McCarthy MI (1997) Association of insulin gene VNTR polymorphism with polycystic ovary syndrome. Lancet 349:1771-1772
    • (1997) Lancet , vol.349 , pp. 1771-1772
    • Bennett, S.T.1    Todd, J.A.2    Waterworth, D.M.3    Franks, S.4    McCarthy, M.I.5
  • 5
    • 5144231483 scopus 로고    scopus 로고
    • Interactions between imprinting effects in the mouse
    • Cattanach BM, Beechey CV, Peters J (2004) Interactions between imprinting effects in the mouse. Genetics 168:397-413
    • (2004) Genetics , vol.168 , pp. 397-413
    • Cattanach, B.M.1    Beechey, C.V.2    Peters, J.3
  • 6
    • 0028151261 scopus 로고
    • Empirical threshold values for quantitative trait mapping
    • Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138:963-971
    • (1994) Genetics , vol.138 , pp. 963-971
    • Churchill, G.A.1    Doerge, R.W.2
  • 7
    • 0034060919 scopus 로고    scopus 로고
    • Evidence for genomic imprinting of the major QTL controlling susceptibility to trypanosomiasis in mice
    • Clapcott SJ, Teale AJ, Kemp SJ (2000) Evidence for genomic imprinting of the major QTL controlling susceptibility to trypanosomiasis in mice. Parasite Immunol (Oxf) 22:259-264
    • (2000) Parasite Immunol (Oxf) , vol.22 , pp. 259-264
    • Clapcott, S.J.1    Teale, A.J.2    Kemp, S.J.3
  • 8
    • 3142677922 scopus 로고    scopus 로고
    • Mapping quantitative trait locus interactions from the maternal and offspring genomes
    • Cui YH, Casella G, Wu RL (2004) Mapping quantitative trait locus interactions from the maternal and offspring genomes. Genetics 167:1017-1026
    • (2004) Genetics , vol.167 , pp. 1017-1026
    • Cui, Y.H.1    Casella, G.2    Wu, R.L.3
  • 9
    • 33645080977 scopus 로고    scopus 로고
    • Model for mapping imprinted quantitative trait loci in an inbred F2 design
    • Cui YH, Lu Q, Cheverud JM, Littell RC, Wu RL (2006) Model for mapping imprinted quantitative trait loci in an inbred F2 design. Genomics 87:543-551
    • (2006) Genomics , vol.87 , pp. 543-551
    • Cui, Y.H.1    Lu, Q.2    Cheverud, J.M.3    Littell, R.C.4    Wu, R.L.5
  • 11
    • 0035989448 scopus 로고    scopus 로고
    • On the detection of imprinted quantitative trait loci in experimental crosses of outbred species
    • de Koning D-J, Bovenhuis H, van Arendonk JAM (2002) On the detection of imprinted quantitative trait loci in experimental crosses of outbred species. Genetics 161:931-938
    • (2002) Genetics , vol.161 , pp. 931-938
    • De Koning, D.-J.1    Bovenhuis, H.2    Van Arendonk, J.A.M.3
  • 12
    • 0025967857 scopus 로고
    • Parental imprinting of the mouse insulin-like growth factor II gene
    • DeChiara TM, Robertson EJ, Efstratiadis A (1991) Parental imprinting of the mouse insulin-like growth factor II gene. Cell 64:849-859
    • (1991) Cell , vol.64 , pp. 849-859
    • Dechiara, T.M.1    Robertson, E.J.2    Efstratiadis, A.3
  • 13
    • 0002629270 scopus 로고
    • Maximum likelihood from incomplet data via the EM algorithm
    • 1
    • Dempster AP, Laird NM, Rubin DB (1977) Maximum likelihood from incomplet data via the EM algorithm. J R Statist Soc B 39(1):1-38
    • (1977) J R Statist Soc B , vol.39 , pp. 1-38
    • Dempster, A.P.1    Laird, N.M.2    Rubin, D.B.3
  • 17
    • 0002281363 scopus 로고
    • The part played by recurrent mutation in evolution
    • Haldane JBS (1922) The part played by recurrent mutation in evolution. Am Nat 67:5-9
    • (1922) Am Nat , vol.67 , pp. 5-9
    • Haldane, J.B.S.1
  • 19
    • 11244328520 scopus 로고    scopus 로고
    • Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome
    • Horike S, Cai S, Miyano M, Cheng J-F, Kohwi-Shigematsu T (2005) Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome. Nat Genet 37:31-40
    • (2005) Nat Genet , vol.37 , pp. 31-40
    • Horike, S.1    Cai, S.2    Miyano, M.3    Cheng, J.-F.4    Kohwi-Shigematsu, T.5
  • 20
    • 0032909094 scopus 로고    scopus 로고
    • A paternally expressed nd cardiac muscle mass in pigs maps to the IGF2 locus
    • Jeon J-T, Carlborg O, Tornsten A, Giuffra E, Amarger V et al (1999) A paternally expressed nd cardiac muscle mass in pigs maps to the IGF2 locus. Nat Genet 21:157-158
    • (1999) Nat Genet , vol.21 , pp. 157-158
    • Jeon, J.-T.1    Carlborg, O.2    Tornsten, A.3    Giuffra, E.4    Amarger, V.5
  • 21
    • 2342456350 scopus 로고    scopus 로고
    • Affected-sib-pair test for linkage based on constraints for identical-by-descent distributions corresponding to disease models with imprinting
    • Knapp M, Strauch K (2004) Affected-sib-pair test for linkage based on constraints for identical-by-descent distributions corresponding to disease models with imprinting. Genet Epidemiol 26:273-285
    • (2004) Genet Epidemiol , vol.26 , pp. 273-285
    • Knapp, M.1    Strauch, K.2
  • 22
    • 0024508964 scopus 로고
    • Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps
    • Lander ES, Botstein D (1989) Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121:185-199
    • (1989) Genetics , vol.121 , pp. 185-199
    • Lander, E.S.1    Botstein, D.2
  • 23
    • 0242286586 scopus 로고    scopus 로고
    • A general statistical framework for mapping quantitative trait loci in nonmodel systems: Issue for characterizing linkage phases
    • Lin M, Lou X-Y, Chang M, Wu RL (2003) A general statistical framework for mapping quantitative trait loci in nonmodel systems: issue for characterizing linkage phases. Genetics 165:901-913
    • (2003) Genetics , vol.165 , pp. 901-913
    • Lin, M.1    Lou, X.-Y.2    Chang, M.3    Wu, R.L.4
  • 24
    • 0001044972 scopus 로고
    • Finding the observed information matrix when using the EM algorithm
    • Louis TA (1982) Finding the observed information matrix when using the EM algorithm. J Roy Stat Soc Ser B 44:226-233
    • (1982) J Roy Stat Soc Ser B , vol.44 , pp. 226-233
    • Louis, T.A.1
  • 25
    • 22344440797 scopus 로고    scopus 로고
    • Genome-wide prediction of imprinted murine genes
    • Luedi PJ, Hartemink AJ, Jirtle RL (2005) Genome-wide prediction of imprinted murine genes. Genome Res 15:875-884
    • (2005) Genome Res , vol.15 , pp. 875-884
    • Luedi, P.J.1    Hartemink, A.J.2    Jirtle, R.L.3
  • 26
    • 0038614937 scopus 로고    scopus 로고
    • Genome-wide scan of bipolar disorder in 65 pedigrees: Supportive evidence for linkage at 8q24, 18q22, 4q32, 2p12, and 13q12
    • McInnis MG, Lan TH, Willour VL, Mcmahon FJ, Simpson SG et al (2003) Genome-wide scan of bipolar disorder in 65 pedigrees: supportive evidence for linkage at 8q24, 18q22, 4q32, 2p12, and 13q12. Mol Psychiatry 8:288-298
    • (2003) Mol Psychiatry , vol.8 , pp. 288-298
    • McInnis, M.G.1    Lan, T.H.2    Willour, V.L.3    McMahon, F.J.4    Simpson, S.G.5
  • 28
    • 3042580215 scopus 로고    scopus 로고
    • Mechanisms of epigenetic variation: Polymorphic imprinting
    • Naumova AK, Croteau S (2004) Mechanisms of epigenetic variation: polymorphic imprinting. Curr Genomics 5:417-429
    • (2004) Curr Genomics , vol.5 , pp. 417-429
    • Naumova, A.K.1    Croteau, S.2
  • 29
    • 0032931894 scopus 로고    scopus 로고
    • An imprinted QTL with major effect on muscle mass and fat deposition maps to the IGF2 locus in pigs
    • Nezer C, Moreau L, Brouwers B, Coppieters W, Detilleux J et al (1999) An imprinted QTL with major effect on muscle mass and fat deposition maps to the IGF2 locus in pigs. Nat Genet 21:155-156
    • (1999) Nat Genet , vol.21 , pp. 155-156
    • Nezer, C.1    Moreau, L.2    Brouwers, B.3    Coppieters, W.4    Detilleux, J.5
  • 30
    • 0038824784 scopus 로고    scopus 로고
    • Identification of a large novel imprinted gene cluster on mouse proximal chromosome 6
    • Ono R, Shiura H, Aburatani H, Kohda T, Kaneko-Ishino T, Ishino F (2003) Identification of a large novel imprinted gene cluster on mouse proximal chromosome 6. Genome Res 13:1696-1705
    • (2003) Genome Res , vol.13 , pp. 1696-1705
    • Ono, R.1    Shiura, H.2    Aburatani, H.3    Kohda, T.4    Kaneko-Ishino, T.5    Ishino, F.6
  • 31
    • 0032809054 scopus 로고    scopus 로고
    • The analysis of parental origin of alleles may detect susceptibility loci for complex disorders
    • Paterson AD, Naimark DMJ, Petronis A (1999) The analysis of parental origin of alleles may detect susceptibility loci for complex disorders. Hum Hered 49:197-204
    • (1999) Hum Hered , vol.49 , pp. 197-204
    • Paterson, A.D.1    Naimark, D.M.J.2    Petronis, A.3
  • 32
    • 0033804122 scopus 로고    scopus 로고
    • Mechanisms of genomic imprinting
    • Pfeifer K (2000) Mechanisms of genomic imprinting. Am J Hum Genet 67:777-787
    • (2000) Am J Hum Genet , vol.67 , pp. 777-787
    • Pfeifer, K.1
  • 33
    • 0038104379 scopus 로고    scopus 로고
    • Familial aggregation of abnormal methylation of parental alleles at the IGF2/H19 and IGF2R differentially methylated regions
    • Sandovici I, Leppert M, Hawk PR, Suarez A, Linares Y, Sapienza C (2003) Familial aggregation of abnormal methylation of parental alleles at the IGF2/H19 and IGF2R differentially methylated regions. Hum Mol Genet 12:1569-1578
    • (2003) Hum Mol Genet , vol.12 , pp. 1569-1578
    • Sandovici, I.1    Leppert, M.2    Hawk, P.R.3    Suarez, A.4    Linares, Y.5    Sapienza, C.6
  • 34
    • 26444546469 scopus 로고    scopus 로고
    • Interindividual variability and parent of origin DNA methylation differences at specific human Alu elements
    • Sandovici I, Kassovska-Bratinova S, Loredo-Osti JC, Leppert M, Suazez A et al (2005) Interindividual variability and parent of origin DNA methylation differences at specific human Alu elements. Hum Mol Genet 14:2135-2143
    • (2005) Hum Mol Genet , vol.14 , pp. 2135-2143
    • Sandovici, I.1    Kassovska-Bratinova, S.2    Loredo-Osti, J.C.3    Leppert, M.4    Suazez, A.5
  • 35
    • 0025691460 scopus 로고
    • Sex-linked dosage-sensitive modifiers as imprinting genes
    • Sapienza C (1990) Sex-linked dosage-sensitive modifiers as imprinting genes. Dev Suppl 107-113
    • (1990) Dev Suppl , pp. 107-113
    • Sapienza, C.1
  • 36
    • 0142122902 scopus 로고    scopus 로고
    • Genomic imprinting and linkage test for quantitative trait loci in extended pedigrees
    • Shete S, Zhou X, Amos CI (2003) Genomic imprinting and linkage test for quantitative trait loci in extended pedigrees. Am J Hum Genet 73:933-938
    • (2003) Am J Hum Genet , vol.73 , pp. 933-938
    • Shete, S.1    Zhou, X.2    Amos, C.I.3
  • 37
    • 0036265787 scopus 로고    scopus 로고
    • The correlation between relatives on the supposition of genomic imprinting
    • Spencer HG (2002) The correlation between relatives on the supposition of genomic imprinting. Genetics 161:411-417
    • (2002) Genetics , vol.161 , pp. 411-417
    • Spencer, H.G.1
  • 38
    • 0033911385 scopus 로고    scopus 로고
    • Parametric and nonparametric multipoint linkage analysis with imprinting and two-locus-trait models: Application to mite sensitization
    • Strauch K, Fimmers R, Kurz T, Deichmann KA, Wienker TF, Baur MP (2000) Parametric and nonparametric multipoint linkage analysis with imprinting and two-locus-trait models: application to mite sensitization. Am J Hum Genet 66:1945-1957
    • (2000) Am J Hum Genet , vol.66 , pp. 1945-1957
    • Strauch, K.1    Fimmers, R.2    Kurz, T.3    Deichmann, K.A.4    Wienker, T.F.5    Baur, M.P.6
  • 40
    • 0242363235 scopus 로고    scopus 로고
    • A regulatory mutation in IGF2 causes a major QTL effect on muscle growth in the pig
    • Van Laere AS, Nguyen M, Braunschweig M, Nezer C, Collette C et al (2003) A regulatory mutation in IGF2 causes a major QTL effect on muscle growth in the pig. Nature 425:832-836
    • (2003) Nature , vol.425 , pp. 832-836
    • Van Laere, A.S.1    Nguyen, M.2    Braunschweig, M.3    Nezer, C.4    Collette, C.5
  • 42
    • 0002148640 scopus 로고    scopus 로고
    • The evolutionary genetics of maternal effects
    • Oxford University Press New York
    • Wade MJ (1998) The evolutionary genetics of maternal effects. In: Mousseau TA, Fox CW (eds) Maternal effects as adaptations. Oxford University Press, New York, pp 5-21
    • (1998) Maternal Effects As Adaptations , pp. 5-21
    • Wade, M.J.1    Mousseau, T.A.2    Fox, C.W.3
  • 43
    • 0034515980 scopus 로고    scopus 로고
    • Gene interactions from maternal effects
    • Wolf JB (2000) Gene interactions from maternal effects. Evolution 54:1882-1898
    • (2000) Evolution , vol.54 , pp. 1882-1898
    • Wolf, J.B.1
  • 44
    • 0036774351 scopus 로고    scopus 로고
    • Contribution of maternal effect QTL to genetic architecture of early growth in mice
    • Wolf JB, Vaughn TT, Pletscher LS, Cheverud JM (2002) Contribution of maternal effect QTL to genetic architecture of early growth in mice. Heredity 89:300-310
    • (2002) Heredity , vol.89 , pp. 300-310
    • Wolf, J.B.1    Vaughn, T.T.2    Pletscher, L.S.3    Cheverud, J.M.4
  • 45
    • 0031932625 scopus 로고    scopus 로고
    • Mapping quantitative trait loci using multiple families of line crosses
    • Xu S (1998) Mapping quantitative trait loci using multiple families of line crosses. Genetics 148:517-524
    • (1998) Genetics , vol.148 , pp. 517-524
    • Xu, S.1
  • 46
    • 0034920198 scopus 로고    scopus 로고
    • Statistical issues in the analysis of quantitative traits in combined crosses
    • Zou F, Yandell BS, Fine JP (2001) Statistical issues in the analysis of quantitative traits in combined crosses. Genetics 158:1339-1346
    • (2001) Genetics , vol.158 , pp. 1339-1346
    • Zou, F.1    Yandell, B.S.2    Fine, J.P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.