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Volumn 73, Issue 1, 2009, Pages 54-60

Identifying rarer genetic variants for common complex diseases: Diseased versus neutral discovery panels

Author keywords

Discovery panel; Genetic association study; Tagging SNP

Indexed keywords

ALLELE; ARTICLE; DISEASE PREDISPOSITION; GENE SEQUENCE; GENETIC ASSOCIATION; GENETIC DISORDER; GENETIC VARIABILITY; HAPLOTYPE; HUMAN; PRIORITY JOURNAL; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 58149301374     PISSN: 00034800     EISSN: 14691809     Source Type: Journal    
DOI: 10.1111/j.1469-1809.2008.00483.x     Document Type: Article
Times cited : (9)

References (28)
  • 1
    • 84972545970 scopus 로고
    • A survey of exact inference for contingency tables
    • Agresti, A. (1992) A survey of exact inference for contingency tables. Statistical Science 7, 131-177.
    • (1992) Statistical Science , vol.7 , pp. 131-177
    • Agresti, A.1
  • 2
    • 38349032004 scopus 로고    scopus 로고
    • Successful design and conduct of genome-wide association studies
    • Spec No. 2
    • Amos, C. I. (2007) Successful design and conduct of genome-wide association studies. Hum Mol Genet, 16 Spec No. 2, R220-5.
    • (2007) Hum Mol Genet , vol.2 , Issue.16
    • Amos, C.I.1
  • 3
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: Analysis and visualization of LD and haplotype maps
    • Barrett, J. C., Fry, B. et al. (2005) Haploview: Analysis and visualization of LD and haplotype maps. Bioinformatics 21 (2), 263-265.
    • (2005) Bioinformatics , vol.21 , Issue.2 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2
  • 4
    • 34447324914 scopus 로고    scopus 로고
    • Commentary: Rare alleles, modest genetic effects and the need for collaboration
    • Campbell, H. & Manolio, T. (2007) Commentary: Rare alleles, modest genetic effects and the need for collaboration. International journal of epidemiology 36, 445-448.
    • (2007) International Journal of Epidemiology , vol.36 , pp. 445-448
    • Campbell, H.1    Manolio, T.2
  • 5
    • 0346373654 scopus 로고    scopus 로고
    • Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium
    • Carlson, C. S., Eberle, M. A. et al. (2004) Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium. Am J Hum Genet 74, 106-120.
    • (2004) Am J Hum Genet , vol.74 , pp. 106-120
    • Carlson, C.S.1    Eberle, M.A.2
  • 6
    • 35948953262 scopus 로고    scopus 로고
    • Power to detect risk alleles using genome-wide tag SNP panels
    • Eberle, M. A., Ng, P. C. et al. (2007) Power to detect risk alleles using genome-wide tag SNP panels. PLoS genetics 3, 1827-1837.
    • (2007) PLoS Genetics , vol.3 , pp. 1827-1837
    • Eberle, M.A.1    Ng, P.C.2
  • 7
    • 39749129053 scopus 로고    scopus 로고
    • Multiple newly identified loci associated with prostate cancer susceptibility
    • Eeles, R. A., Kote-Jarai, Z. et al. (2008) Multiple newly identified loci associated with prostate cancer susceptibility. Nat Genet 40, 316-321.
    • (2008) Nat Genet , vol.40 , pp. 316-321
    • Eeles, R.A.1    Kote-Jarai, Z.2
  • 8
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • Frazer, K. A., Ballinger, D. G. et al. (2007) A second generation human haplotype map of over 3.1 million SNPs. Nature 449, 851-861.
    • (2007) Nature , vol.449 , pp. 851-861
    • Frazer, K.A.1    Ballinger, D.G.2
  • 9
    • 0344742274 scopus 로고    scopus 로고
    • Cancer survival and incidence from the Surveillance, Epidemiology, and End Results (SEER). program
    • Gloeckler Ries, L. A., Reichman, M. E. et al. (2003) Cancer survival and incidence from the Surveillance, Epidemiology, and End Results (SEER). program. Oncologist 8, 541-552.
    • (2003) Oncologist , vol.8 , pp. 541-552
    • Gloeckler Ries, L.A.1    Reichman, M.E.2
  • 10
    • 38749145596 scopus 로고    scopus 로고
    • Shifting paradigm of association studies: Value of rare single-nucleotide polymorphisms
    • Gorlov, I. P., Gorlova, O. Y. et al. (2008) Shifting paradigm of association studies: Value of rare single-nucleotide polymorphisms. Am J Hum Genet 82, 100-112.
    • (2008) Am J Hum Genet , vol.82 , pp. 100-112
    • Gorlov, I.P.1    Gorlova, O.Y.2
  • 11
    • 79959503826 scopus 로고    scopus 로고
    • The International HapMap Project
    • Hapmap Consortium
    • Hapmap Consortium (2003) The International HapMap Project. Nature 426, 789-796.
    • (2003) Nature , vol.426 , pp. 789-796
  • 12
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • Hapmap Consortium
    • Hapmap Consortium (2005) A haplotype map of the human genome. Nature 437, 1299-1320.
    • (2005) Nature , vol.437 , pp. 1299-1320
  • 13
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • Hudson, R.R. (2002) Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18, 337-338.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 14
    • 40149111451 scopus 로고    scopus 로고
    • What Can Genome-Wide Association Studies Tell Us about the Genetics of Common Disease?
    • Iles, M.M. (2008) What Can Genome-Wide Association Studies Tell Us about the Genetics of Common Disease? PLoS genetics 4, e33.
    • (2008) PLoS Genetics , vol.4
    • Iles, M.M.1
  • 15
    • 33745600563 scopus 로고    scopus 로고
    • Commentary: Grading the credibility of molecular evidence for complex diseases
    • discussion 593-596
    • Ioannidis, J.P. (2006) Commentary: Grading the credibility of molecular evidence for complex diseases. International journal of epidemiology 35, 572-8; discussion 593-596.
    • (2006) International Journal of Epidemiology , vol.35 , pp. 572-578
    • Ioannidis, J.P.1
  • 16
    • 33846457870 scopus 로고    scopus 로고
    • Cancer statistics, 2007
    • Jemal, A., Siegel, R. et al. (2007) Cancer statistics, 2007. CA Cancer J Clin 57, 43-66.
    • (2007) CA Cancer J Clin , vol.57 , pp. 43-66
    • Jemal, A.1    Siegel, R.2
  • 17
    • 34447329000 scopus 로고    scopus 로고
    • On the synthesis and interpretation of consistent but weak gene-disease associations in the era of genome-wide association studies
    • Khoury, M. J., Little, J. et al. (2007) On the synthesis and interpretation of consistent but weak gene-disease associations in the era of genome-wide association studies. International journal of epidemiology 36, 439-445.
    • (2007) International Journal of Epidemiology , vol.36 , pp. 439-445
    • Khoury, M.J.1    Little, J.2
  • 18
    • 35649020156 scopus 로고    scopus 로고
    • Power analysis for genome-wide association studies
    • Klein, R. J. (2007) Power analysis for genome-wide association studies. BMC Genet 8, 58.
    • (2007) BMC Genet , vol.8 , pp. 58
    • Klein, R.J.1
  • 19
    • 20244380171 scopus 로고    scopus 로고
    • Complement factor H polymorphism in age-related macular degeneration
    • (New York, N.Y
    • Klein, R. J., Zeiss, C. et al. (2005) Complement factor H polymorphism in age-related macular degeneration. Science (New York, N.Y 308, 385-389.
    • (2005) Science , vol.308 , pp. 385-389
    • Klein, R.J.1    Zeiss, C.2
  • 20
    • 6344267228 scopus 로고    scopus 로고
    • Pattern of sequence variation across 213 environmental response genes
    • Livingston, R.J., Von Niederhausern, A. et al. (2004) Pattern of sequence variation across 213 environmental response genes. Genome Res 14, 1821-1831.
    • (2004) Genome Res , vol.14 , pp. 1821-1831
    • Livingston, R.J.1    Von Niederhausern, A.2
  • 22
    • 0037370466 scopus 로고    scopus 로고
    • Chromosome-wide distribution of haplotype blocks and the role of recombination hot spots
    • Phillips, M.S., Lawrence, R. et al. (2003) Chromosome-wide distribution of haplotype blocks and the role of recombination hot spots. Nat Genet 33, 382-387.
    • (2003) Nat Genet , vol.33 , pp. 382-387
    • Phillips, M.S.1    Lawrence, R.2
  • 23
    • 0034977045 scopus 로고    scopus 로고
    • Linkage disequilibrium in humans: Models and data
    • Pritchard, J.K. & Przeworski, M. (2001) Linkage disequilibrium in humans: Models and data. Am J Hum Genet 69, 1-14.
    • (2001) Am J Hum Genet , vol.69 , pp. 1-14
    • Pritchard, J.K.1    Przeworski, M.2
  • 24
    • 34547755055 scopus 로고    scopus 로고
    • Type 2 diabetes whole-genome association study in four populations: The DiaGen consortium
    • Salonen, J.T., Uimari, P. et al. (2007) Type 2 diabetes whole-genome association study in four populations: The DiaGen consortium. Am J Hum Genet 81, 338-345.
    • (2007) Am J Hum Genet , vol.81 , pp. 338-345
    • Salonen, J.T.1    Uimari, P.2
  • 25
    • 33749405883 scopus 로고    scopus 로고
    • How well do HapMap SNPs capture the untyped SNPs?
    • Tantoso, E., Yang, Y. & Li, K.B. (2006) How well do HapMap SNPs capture the untyped SNPs? BMC genomics 7, 238.
    • (2006) BMC Genomics , vol.7 , pp. 238
    • Tantoso, E.1    Yang, Y.2    Li, K.B.3
  • 26
    • 0344826588 scopus 로고    scopus 로고
    • Haplotype tagging single nucleotide polymorphisms and association studies
    • Thompson, D., Stram, D. et al. (2003) Haplotype tagging single nucleotide polymorphisms and association studies. Hum Hered 56, 48-55.
    • (2003) Hum Hered , vol.56 , pp. 48-55
    • Thompson, D.1    Stram, D.2
  • 27
    • 27544446224 scopus 로고    scopus 로고
    • The International HapMap Project Web site
    • Thorisson, G.A., Smith, A.V. et al. (2005) The International HapMap Project Web site. Genome Res 15, 1592-1593.
    • (2005) Genome Res , vol.15 , pp. 1592-1593
    • Thorisson, G.A.1    Smith, A.V.2
  • 28
    • 28444437027 scopus 로고    scopus 로고
    • An evaluation of HapMap sample size and tagging SNP performance in large-scale empirical and simulated data sets
    • Zeggini, E., Rayner, W. et al. (2005) An evaluation of HapMap sample size and tagging SNP performance in large-scale empirical and simulated data sets. Nat Genet 37, 1320-2.
    • (2005) Nat Genet , vol.37 , pp. 1320-1322
    • Zeggini, E.1    Rayner, W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.