메뉴 건너뛰기




Volumn 37, Issue SUPPL. 1, 2009, Pages

AS-ALPS: A database for analyzing the effects of alternative splicing on protein structure, interaction and network in human and mouse

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; ALTERNATIVE RNA SPLICING; ALTERNATIVE SPLICING INDUCED ALTERATION OF PROTEIN STRUCTURE DATABASE; AMINO ACID SEQUENCE; ARTICLE; BINDING AFFINITY; COMPUTER PROGRAM; HUMAN; HYDROPHOBICITY; INTERNET; MOLECULAR INTERACTION; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN DATABASE; PROTEIN DOMAIN; PROTEIN INTERACTION; PROTEIN STABILITY; PROTEIN STRUCTURE; SEQUENCE ANALYSIS;

EID: 58149193242     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn869     Document Type: Article
Times cited : (28)

References (23)
  • 1
    • 23944473342 scopus 로고    scopus 로고
    • Structural and functional diversity generated by alternative mRNA splicing
    • Stetefeld,J. and Ruegg,M.A. (2005) Structural and functional diversity generated by alternative mRNA splicing. Trends Biochem. Sci., 30, 515-521.
    • (2005) Trends Biochem. Sci , vol.30 , pp. 515-521
    • Stetefeld, J.1    Ruegg, M.A.2
  • 5
    • 0019860994 scopus 로고
    • Correlation of DNA exonic regions with protein structural units in haemoglobin
    • Go,M. (1981) Correlation of DNA exonic regions with protein structural units in haemoglobin. Nature, 291, 90-92.
    • (1981) Nature , vol.291 , pp. 90-92
    • Go, M.1
  • 6
    • 0027306129 scopus 로고
    • Localization of hydrogen-bonds within modules in barnase
    • Noguti,T., Sakakibara,H. and Go,M. (1993) Localization of hydrogen-bonds within modules in barnase. Proteins, 16, 357-363.
    • (1993) Proteins , vol.16 , pp. 357-363
    • Noguti, T.1    Sakakibara, H.2    Go, M.3
  • 7
    • 34249705763 scopus 로고    scopus 로고
    • Retention of local conformational compactness in unfolding of barnase: Contribution of end-to-end interactions within quasi-modules
    • Shinoda,K., Takahashi,K. and Go,M. (2007) Retention of local conformational compactness in unfolding of barnase: Contribution of end-to-end interactions within quasi-modules. Biophysics, 3, 1-12.
    • (2007) Biophysics , vol.3 , pp. 1-12
    • Shinoda, K.1    Takahashi, K.2    Go, M.3
  • 8
    • 38549167437 scopus 로고    scopus 로고
    • ProSAS: A database for analyzing alternative splicing in the context of protein structures
    • Birzele,F., Kuffner,R., Meier,F., Oefinger,F., Potthast,C. and Zimmer,R. (2008) ProSAS: A database for analyzing alternative splicing in the context of protein structures. Nucleic Acids Res., 36, D63-D68.
    • (2008) Nucleic Acids Res , vol.36
    • Birzele, F.1    Kuffner, R.2    Meier, F.3    Oefinger, F.4    Potthast, C.5    Zimmer, R.6
  • 10
    • 0032104190 scopus 로고    scopus 로고
    • A rule for termination-codon position within intron-containing genes: When nonsense affects RNA abundance
    • Nagy,E. and Maquat,L.E. (1998) A rule for termination-codon position within intron-containing genes: When nonsense affects RNA abundance. Trends Biochem. Sci., 23, 198-199.
    • (1998) Trends Biochem. Sci , vol.23 , pp. 198-199
    • Nagy, E.1    Maquat, L.E.2
  • 11
    • 33846075227 scopus 로고    scopus 로고
    • H-DBAS: Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational
    • Takeda,J., Suzuki,Y., Nakao,M., Kuroda,T., Sugano,S., Gojobori,T. and Imanishi,T. (2007) H-DBAS: Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational. Nucleic Acids Res., 35, D104-D109.
    • (2007) Nucleic Acids Res , vol.35
    • Takeda, J.1    Suzuki, Y.2    Nakao, M.3    Kuroda, T.4    Sugano, S.5    Gojobori, T.6    Imanishi, T.7
  • 13
    • 0035825662 scopus 로고    scopus 로고
    • Functional annotation of a full-length mouse cDNA collection
    • The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
    • The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium (2001) Functional annotation of a full-length mouse cDNA collection. Nature, 409, 685-690.
    • (2001) Nature , vol.409 , pp. 685-690
  • 14
    • 33846057724 scopus 로고    scopus 로고
    • NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • Pruitt,K.D., Tatusova,T. and Maglott,D.R. (2007) NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res., 35, D61-D65.
    • (2007) Nucleic Acids Res , vol.35
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 15
    • 38549097071 scopus 로고    scopus 로고
    • The universal protein resource (UniProt)
    • UniProt Consortium
    • UniProt Consortium. (2008) The universal protein resource (UniProt). Nucleic Acids Res., 36, D190-D195.
    • (2008) Nucleic Acids Res , vol.36
  • 16
    • 0035798406 scopus 로고    scopus 로고
    • Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
    • Gough,J., Karplus,K., Hughey,R. and Chothia,C. (2001) Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. J. Mol. Biol., 313, 903-919.
    • (2001) J. Mol. Biol , vol.313 , pp. 903-919
    • Gough, J.1    Karplus, K.2    Hughey, R.3    Chothia, C.4
  • 19
    • 1642504213 scopus 로고    scopus 로고
    • Het-PDB Navi.: A database for protein-small molecule interactions
    • Yamaguchi,A., Iida,K., Matsui,N., Tomoda,S., Yura,K. and Go,M. (2004) Het-PDB Navi.: A database for protein-small molecule interactions. J. Biochem., 135, 79-84.
    • (2004) J. Biochem , vol.135 , pp. 79-84
    • Yamaguchi, A.1    Iida, K.2    Matsui, N.3    Tomoda, S.4    Yura, K.5    Go, M.6
  • 20
    • 21744452187 scopus 로고    scopus 로고
    • A minor alternative transcript of the fumarylacetoacetate hydrolase gene produces a protein despite being likely subjected to nonsense-mediated mRNA decay
    • Dreumont,N., Maresca,A., Boisclair-Lachance,J.F., Bergeron,A. and Tanguay,R.M. (2005) A minor alternative transcript of the fumarylacetoacetate hydrolase gene produces a protein despite being likely subjected to nonsense-mediated mRNA decay. BMC Mol. Biol., 6, 1.
    • (2005) BMC Mol. Biol , vol.6 , pp. 1
    • Dreumont, N.1    Maresca, A.2    Boisclair-Lachance, J.F.3    Bergeron, A.4    Tanguay, R.M.5
  • 21
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson,W.R. and Lipman,D.J. (1988) Improved tools for biological sequence comparison. Proc. Natl Acad. Sci. USA, 85, 2444-2448.
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.