Role of ribose in the initial excited state structural dynamics of thymidine in water solution: A resonance raman and density functional theory investigation

Journal of Physical Chemistry B

Volumn 112, Issue 49, 2008, Pages 15828-15836

  Zhu, Xin Ming ^a   Wang, Hui Gang ^a   Zheng, Xuming ^a   Phillips, David Lee ^b  

^a ZHEJIANG SCI TECH UNIVERSITY   (China)

^b UNIVERSITY OF HONG KONG   (Hong Kong)

Author keywords

[No Author keywords available]

Indexed keywords

ABSORPTION SPECTROSCOPY; DENSITY FUNCTIONAL THEORY; DYNAMICS; PHOTODISSOCIATION; PHOTOLYSIS; STRUCTURAL DYNAMICS; WATER ABSORPTION;

CONICAL INTERSECTIONS; EXCITATION WAVELENGTHS; LIFE-TIMES; MULTI-DIMENSIONAL; NONRADIATIVE DECAY CHANNELS; PHOTODISSOCIATION DYNAMICS; RAMAN INTENSITIES; RESONANCE RAMAN; RESONANCE RAMAN SPECTRUMS; STRUCTURE DYNAMICS; WATER SOLUTIONS;

RESONANCE;

EID: 58149152819     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp806248b     Document Type: Article

References (55)

1. Crespo-Hernández, C. E.; Cohen, B.; Hare, P. M.; Kohler, B. Chem. Rev. 2004, 104, 1977-2020.
2. (a) Pecourt, J.-M. L.; Peon. J.; Kohler. B. J. Am. Chem. Soc. 2000. 122, 9348-9349.
3. (b) Nikogosyan, D. N.; Angelov. D.; Soep. B.; Lindqvist, L. Chem. Phys. Lett. 1996, 252, 322-326.
4. (c) Reuther, A.; Nikogosyan, D. N.; Laubereau, A. J. Phys. Chem. 1996, 100. 5570-5577.
5. (d) Reuther. A.; Iglev. H.; Laenen. R.; Laubereau. A. Chem. Phys. Lett. 2000, 325. 360-368.
6. (a) Pecourt, J.-M. L.; Peon, J.; Kohler, B. J. Am. Chem. Soc. 2001, 123, 10370-10378.
7. (b) Gustavsson, T.; Sharonov, A.; Markovitsi, D. Chem. Phys. Lett. 2002, 351, 195-200.
8. Hare, P. M.; Crespo-Hernández, C. E.; Kohler, B. Proc. Natl. Acad. Sci. 2007, 104. 435-140.
9. Hare. P. M.; Crespo-Hernández, C. E.; Kohler, B. J. Phys. Chem. B 2006, 110, 18641-18650.
10. Kwok. W.-M.; Ma, C; Phillips, D. L.J. Am. Chem. Soc. 2008, 130, 5131-5139.
11. Marguet, S.: Markovitsi, D. J. Am. Chem. Soc. 2005. 127, 5780-5781.
12. Salet, C; Bensasson, R.; Becker, R. S. Photochem. Photobiol 1979, 30, 325-329.
13. Lorentzon, J.; Euelscher, M. P.; Roos, B. O. J. Am. Chem. Soc. 1995, 117. 9265-9273.
14. Broo, A.; Holmén, A. J. Phys. Chem. A 1997, 101, 3589-3600.
15. Gustavsson, T.; Bányász, Á.; Lazzarotto, E.; Markovitsi, D.; Scalmani. G.; Frisch, M. J.; Barone. V.; Improta, R. J. Am. Chem. Soc. 2006, 128, 607-619.
16. Perun, S.: Sobolewski. A. L.; Domcke, W. J. Phys. Chem. A 2006. 110, 13238-13244.
17. (a) Merchán, M.; Serrano-Andrés. L.; Robb, M. A.; Blancafort, L. J. Am. Chem. Soc. 2005, 127. 1820-1825.
18. (b) Blancafort, L.; Robb. M. A. J. Phys. Chem. A 2004, 108, 10609-10614.
19. Improta, R.; Barone, V. J. Am. Chem. Soc. 2004,126, 14320-14321.
20. (a) Matsika, S. J. Phys. Chem. A 2004, 108, 7584-7590.
21. (b) Matsika, S. J. Phys. Chem. A 2005, 109, 7538-7545.
22. (a) Marian, C. M.; Schneider. R; Kleinschmidt, M.; Tatchen. J. Eur. Phvs. J. 2002. D20, 357-367.
23. (b) Marian. C. M. J. Chem. Phvs. 2005, 122. 104314.
24. (a) Lira, E. C. J. Phys. Chem. 1986, 90, 6770-6777.
25. (b) Lai, T.-i.; Lim, E. C. Chem. Phys. Lett. 1980, 73. 244-248.
26. Broo. A. J. Phys. Chem. A 1998, 102, 526-531.
27. Mennucci, B.; Toniolo, A.; Tomasi, J. J. Phys. Chem. A 2001, 105, 7126-7134.
28. Billinghurst, B. E.; Yeung, R.: Loppnow, G. R. J. Phys. Chem. A 2006, 110. 6185-6191.
29. Yarasi, S.; Brost, P.; Loppnow, G. R. J. Phys. Chem. A 2007, 111, 5130-5135.
30. Rush, T. I.; Peticolas. W. L. J. Phys. Chem. 1995, 99, 14647-14658.
31. Zhu, X.-M.; Zhang, S.-Q.; Zheng, X.: Phillips, D. L. J. Phys. Chem. A 2005, 109. 3086-3093.
32. Zheng, X.; Li, Y.-L.; Phillips, D. L. J. Phys. Chem. A 2004, 108, 8032-8039.
33. Kwok, W. M.; Phillips. D. L.; Yeung, P. K.-Y.; Yam. V. W.-W. J. Phys. Chem. A 1997, 101. 9286-9295.
34. Loppnow, G. R.; Mathies, R. A. Biophys. J. 1988, 54, 35-43.
35. Lee. S.-Y.; Heller, E. J. J. Chem. Phys. 1979, 71. 4777-4788.
36. Heller, E. J.; Sundberg, R.; Tannor, D. J. Phys. Chem. 1982, 86, 1822-1833.
37. Myers, A. B.; Mathies, R. A. In Biological Applications of Raman Spectroscopy; Spiro, T. G., Ed.; Wiley: New York, 1987; Vol. 2, p 1.
38. Myers, A. B. In Laser Techniques in Chemistry; Myers, A. B.; Rizzo. T. R., Eds.; Wiley: New York. 1995; p 325.
39. Becke, A. D. J. Chem. Phys. 1986, 84, 4524-1529.
40. Lee. C; Yang, W.; Pair, R. G. Phys. Rev. B 1988. 37, 785-789.
41. Frisch, M. J.; Tracks, G. W.; Schlegel, H. B.; et al. Gaussian 03, Revision B.02; Gaussian, Inc.: Pittsburgh. PA, 2003.
42. Yurenko, Y. P.; Zhurakivsky, R. O.; Ghomi, M.; Samijlenko, S. P.: Hovoran, D. M. J. Phys. Chem. B 2007, 111, 9655-9663.
43. Tsuboi, M.; Komatsu, M.; Hoshi, J.; Kawashima, E.; Sekine, T.; Ishido, Y.; Russell, M. P.; Benevides, J. M.; Thomas, G. J., Jr. J. Am. Chem. Soc. 1997, 119, 2025-2032.
44. Shishkin, O. V.; Pelmenschikov, A.; Hovorun, D. M.; Leszczvnski, J. J. Mol Struct. 2000, 526, 329-341.
45. Rivas, L.; Sánchez-Cortés, S.; García-Ramos, J. V. Phys. Chem. Chem. Phys. 2002, 4, 1943-1948.
46. Ivanov, A. Y.; Sheina, G. G.; Krasnokutski, S. A. Low Temp, Phys. 2003, 29, 809-813.
47. Szczepaniak. K.; Szczesniak. M. M.: Person. W. B. J. Phys. Chem. A 2000, 104, 3852-3863.
48. Yarasi. S.: Billinghurst. B. E.; Loppnow. G. R. /. Raman Spectrosc. 2007, 38, 1117-1126.
49. Susi. H.; Ard. J. S. Spectrochimca Acta 1974, 30A, 1843-1853.
50. Phillips, D. L.; Myers, A. B. J. Phys. Chem. 1991, 95. 7164-7171.
51. Kwok, W. M.; Phillips, D. L. J. Chem. Phys. 1996. 104, 9816-9832.
52. (a) Ziegler, L. D.; Hudson, B. S. J. Chem. Phys. 1983, 79, 1197-1202.
53. (b) Sension, R. J.; Mayne, L.; Hudson, B. J. Am. Chem. Soc. 1987, 109. 5036-5038.
54. (c) Sension, R. J.; Hudson, B. S. J. Chem. Phys. 1989. 90. 1377-1389.
55. Gao, P.-C; Wang, H.-G.; Pel, K.-M.; Zheng, X. Chem. Phys. Lett. 2007, 445. 173-178. http://pubs.acs.org