Rapid and real-time detection technologies for emerging viruses of biomedical importance

Journal of Biosciences

Volumn 33, Issue 4, 2008, Pages 617-628

  Parida, M M ^a  

^a Defence R and D Establishment ^*  (India)

Author keywords

Emerging viruses; LAMP; Rapid detection; Real time PCR

Indexed keywords

ANTIBODY; BIOASSAY; BIOTECHNOLOGY; EPIDEMIC; GENOMICS; HEALTH RISK; POLYMERASE CHAIN REACTION; PROTEOMICS; REAL TIME; VIRUS;

ASSAY; DIAGNOSTIC ACCURACY; GENOMICS; HUMAN; LOOP MEDIATED ISOTHERMAL AMPLIFICATION ASSAY; NONHUMAN; PROTEOMICS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; REVIEW; SENSITIVITY AND SPECIFICITY; VIRUS DETECTION; VIRUS INFECTION; VIRUS LOAD;

COMMUNICABLE DISEASES, EMERGING; DIAGNOSTIC TECHNIQUES AND PROCEDURES; DNA PRIMERS; DNA, VIRAL; HUMANS; NUCLEIC ACID AMPLIFICATION TECHNIQUES; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SENSITIVITY AND SPECIFICITY; SEROTYPING; VIRUS DISEASES; VIRUSES;

JAPANESE ENCEPHALITIS VIRUS; SARS CORONAVIRUS;

EID: 58149149790     PISSN: 02505991     EISSN: 02505991     Source Type: Journal    
DOI: 10.1007/s12038-008-0079-7     Document Type: Review

References (43)

1. C. Beuret 2004 Simultaneous detection of enteric viruses by multiplex real-time RT-PCR J. Virol. Methods 115 1 8
2. A. B. Chan J. D. Fox 1999 NASBA and other transcription-based amplification methods for research and diagnostic microbiology Rev. Med. Microbiol. 10 185 196
3. L. J. Chien T. L. Liao P. Y. Shu 2006 Development of Real-Time Reverse Transcriptase PCR Assay To Detect and Serotype Dengue Viruses J. Clin. Microbiol. 44 1295 1304
4. Y. Dong-Kun C. H. Kweon B. H. Kim 2004 TaqMan reverse transcription polymerase chain reaction for the detection of Japanese encephalitis virus J. Vet. Sci. 5 345 351
5. K. O. Enders N. Peter K. C. Cheng Y. Y. Antia 2005 Influenza A H5N1 Detection Emerg. Infect. Dis. 11 1303 1305
6. Y. Enomoto T. Yoshikawa M. Ihira 2005 Rapid diagnosis of herpes simplex virus infection by a loop-mediated isothermal amplification method J. Clin. Microbiol. 43 951 955
7. M. J. Espy J. R. Uhl L. Sloan 2006 Real-time PCR in clinical microbiology: applications for routine laboratory testing Clin. Microbiol. Rev. 19 165 256
8. S. Fukuda S. Takao M. Kuwayama Y. Shimazu K. Miyazaki 2006 Rapid detection of norovirus from fecal specimens by real-time reverse transcription-loop-mediated isothermal amplification assay J. Clin. Microbiol. 44 1376 1381
9. R. N. Gunson T. C. Collins W. F. Carman 2006 Practical experience of high throughput real time PCR in the routine diagnostic virology setting J. Clin. Virol. 35 355 367
10. M. Hagiwara H. Sasaki K. Matsuo M. Honda M. Kawase H. Nakagawa 2007 Loop-mediated isothermal amplification method for detection of human papillomavirus type 6, 11, 16, and 18 J. Med. Virol. 79 605 615
11. T. C. Hong Q. L. Mai D. V. Cuong 2004 Development and evaluation of a novel loop-mediated isothermal amplification method for rapid detection of severe acute respiratory syndrome coronavirus J. Clin. Microbiol. 42 1956 1961
12. M. Imai A. Ninomiya H. Minekawa 2006 Rapid diagnosis of H5N1 avian influenza virus infection by newly developed influenza H5 hemagglutinin gene-specific loop-mediated isothermal amplification method Vaccine 24 6679 6682
13. S. S. Jiang T. C. Chen J. Y. Yang 2004 Sensitive and quantitative detection of severe acute respiratory syndrome coronavirus infection by real-time nested polymerase chain reaction Clin. Infect. Dis. 38 293 296
14. H. Kaneko T. Iida K. Aoki S. Ohno T. Suzutani 2005 Sensitive and rapid detection of herpes simplex virus and varicella-zoster virus DNA by loop-mediated isothermal amplification J. Clin. Microbiol. 43 3290 3296
15. I. M. Mackay K. E. Arden A. Nitsche 2002 Real-time PCR in virology Nucleic Acids Res. 30 1292 1305
16. Y. Mori K. Nagamine N. Tomita T. Notomi 2001 Detection of Loop mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation Biochem. Biophys. Res. Commun. 289 150 154
17. Y. Mori M. Kitao N. Tomita T. Notomi 2004 Real-time turbidimetry of LAMP reaction for quantifying template DNA J. Biochem. Biophys. Methods 59 145 157
18. Y. Mori T. Hirano T. Notomi 2006 Sequence specific visual detection of LAMP reactions by addition of cationic polymers BMC Biotech. 6 3
19. K. Nagamine T. Hase T. Notomi 2002 Accelerated reaction by loop mediated isothermal amplification using loop primers Mol. Cell. Prob. 16 223 229
20. Niesters H G 2002 Clinical virology in real time; J. Clin. Virol. (Suppl. 3) S3-S12
21. T. Notomi H. Okayama H. Masubuchi 2000 Loop-mediated isothermal amplification of DNA Nucleic Acids Res. 28 e63
22. S. Okamoto T. Yoshikawa M. Ihira 2004 Rapid detection of Varicella-zoster virus infection by a loop-mediated isothermal amplification method J. Med. Virol. 74 677 682
23. M. M. Parida P. Guillermo S. Inoue F. Hasebe K. Morita 2004 Real-Time Reverse Transcription Loop mediated isothermal amplification for rapid detection of West Nile Virus J. Clin. Microbiol. 42 257 263
24. M. M. Parida K. Horioke H. Ishida 2005 Rapid detection and differentiation of dengue virus serotypes by a real-time reverse transcription-loop-mediated isothermal amplification assay J. Clin. Microbiol. 43 2895 2903
25. M. M. Parida S. R. Santhosh P. K. Dash 2006 Development and evaluation of reverse transcription Loop mediated isothermal amplification assay for rapid and Real-time detection of Japanese encephalitis virus J. Clil. Microbiol. 44 4172 4178
26. M. M. Parida S. R. Santhosh P. K. Dash 2007 Rapid and real-time detection of chikungunya virus by reverse transcription loop mediated isothermal amplification assay J. Clin. Microbiol. 45 351 357
27. M. M. Parida S. R. Santhosh P. K. Dash P. V. Lakshmana Rao K. Morita 2008 Rapid and Real-time Assays for Detection and Quantification of Chikungunya Virus Future Virol. 3 179 192
28. L. L. Poon K. H. Chan O. K. Wong 2003 Early diagnosis of SARS coronavirus infection by real time RT-PCR J. Clin. Virol. 28 233 238
29. R. M. Ratcliff G. Chang T. Kok T. P. Sloots 2007 Molecular diagnosis of medical viruses Curr. Issues Mol. Biol. 9 87 102
30. J. Ruelle B. K. Mukadi M. Schutten P. Goubau 2004 Quantitative real-time PCR on Lightcycler for the detection of human immunodeficiency virus type 2 (HIV-2) J. Virol. Methods 117 67 74
31. S. R. Santhosh M. M. Parida P. K. Dash 2007 Development and Evaluation of SYBR Green I based One Step Real time RT-PCR assay for detection and quantification of Chikungunya virus J. Clin. Virol. 39 188 193
32. S. R. Santhosh M. M. Parida P. K. Dash 2007 Development and Evaluation of SYBR Green I based One Step Real time RT-PCR assay for detection and quantification of Japanese encephalitis virus J. Virol. Methods 143 73 80
33. M. Schmid R. Oehme G. Schalasta S. Brockmann P. Kimmig G. Enders 2004 Fast detection of Noroviruses using a real-time PCR assay and automated sample preparation BMC Infect. Dis. 4 15
34. B. A. Schwarz R. Bange T. W. Vahlenkamp R. Johne H. Muller 2002 Detection and quantitation of group A rotaviruses by competitive and real-time reverse transcription-polymerase chain reaction J. Virol. Methods 105 277 285
35. P. Y. Shu S. F. Chang Kuo 2003 Development of group- and serotypespecific one-step SYBR green I-based real-time reverse transcription- PCR assay for dengue virus J. Clin. Microbiol. 41 2408 2416
36. H. Sugiyama T. Yoshikawa M. Ihira Y. Enomoto T. Kawana Y. Asano 2005 Comparison of loop-mediated isothermal amplification, real-time PCR, and virus isolation for the detection of herpes simplex virus in genital lesions J. Med. Virol. 75 583 587
37. R. Suzuki T. Yoshikawa M. Ihira 2006 Development of the loop-mediated isothermal amplification method for rapid detection of cytomegalovirus DNA J. Virol. Methods 132 216 221
38. K. E. Templeton S. A. Scheltinga M. F. Beersma A. C. Kroes C. Claas 2004 Rapid and sensitive method using multiplex real-time PCR for diagnosis of infections by influenza a and influenza B viruses, respiratory syncytial virus, and parainfluenza viruses 1, 2, 3, and 4 J. Clin. Microbiol. 42 1564 1569
39. H. Toriniwa T. Komiya 2006 Rapid detection and quantification of Japanese encephalitis virus by real-time reverse transcription loop-mediated isothermal amplification Microbiol. Immunol. 50 379 387
40. K. Uchida M. Shinohara S. Shimada 2005 Rapid and sensitive detection of mumps virus RNA directly from clinical samples by real-time PCR J. Med. Virol. 75 470 474
41. H. Ushikubo 2004 Principle of LAMP method - a simple and rapid gene amplification method Virus 54 107 112
42. W. A. Vrstrepen S. Kuhn M. M. Kockx M. E. Van De Vyvere A. H. Mertens 2001 Rapid detection of enterovirus RNA in cerebrospinal fluid specimens with a novel single-tube real-time reverse transcription-PCR assay J. Clin. Microbiol. 39 4093 4096
43. F. Zinger K. Ebner T. Lion 2006 Detection and monitoring of virus infections by real-time PCR Mol. Aspects Med. 27 254 298