Selection of oligonucleotides for whole-genome microarrays with semi-automatic update

Bioinformatics

Volumn 25, Issue 1, 2009, Pages 128-129

  Golfier, G ^a   Lemoine, S ^b   Van Miltenberg, A ^a   Bendjoudi, A ^a   Rossier, J ^a   Le Crom, S ^b   Potier, Marie Clude ^a  

^a Brain Plasticity Unit   (France)

^b ECOLE NORMALE SUPÉRIEURE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

OLIGONUCLEOTIDE;

ARTICLE; BIOINFORMATICS; COMPUTER INTERFACE; CROSS HYBRIDIZATION; DNA MICROARRAY; GENE LIBRARY; GENETIC ALGORITHM; GENETIC DATABASE; MOLECULAR PROBE; PRIORITY JOURNAL;

EID: 58049192956     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btn573     Document Type: Article

References (7)

1. Ait Yahya-Graison,E. et al. (2007) Classification of human chromosome 21 gene-expression variations in Down syndrome: Impact on disease phenotypes. Am. J. Hum. Genet., 81, 475-491.
2. Le Brigand,K. et al. (2006) An open-access long oligonucleotide microarray resource for analysis of the human and mouse transcriptomes. Nucleic Acids Res., 34, e87.
3. Le Novère,N. (2001) MELTING, computing the melting temperature of nucleic acid duplex. Bioinformatics, 17, 1226-1227.
4. Perez-Iratxeta,C. and Andrade,M.A. (2005) Inconsistencies over time in 5% of NetAffx probe-to-gene annotations. BMC Bioinformatics, 6 183.
5. Pruitt,K.D. et al. (2007) NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res., 35, D61-D65.
6. Rouillard,J.M. et al. (2002) OligoArray 2.0: Design of oligonucleotide probes for DNA microarrays using a thermodynamic approach. Bioinformatics, 18, 486-487.
7. Zuker,M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res., 31, 3406-3415.