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Volumn 315, Issue 2, 2009, Pages 226-239

Proteomic analysis of the nuclear matrix in the early stages of rat liver carcinogenesis: Identification of differentially expressed and MAR-binding proteins

Author keywords

Hepatocytes; Heterogeneous nuclear ribonuclearproteins; Lamins; Matrix Attachment Regions; Nuclear Matrix; Nuclear mitotic apparatus protein; Persistent hepatocyte nodules; Proteomics

Indexed keywords

LAMIN; MATRIX ATTACHMENT REGION BINDING PROTEIN;

EID: 57749204774     PISSN: 00144827     EISSN: 10902422     Source Type: Journal    
DOI: 10.1016/j.yexcr.2008.10.017     Document Type: Article
Times cited : (18)

References (53)
  • 2
    • 33845211776 scopus 로고    scopus 로고
    • Epigenetic aberrations and cancer
    • Ducasse M., and Brown M.A. Epigenetic aberrations and cancer. Mol. Cancer 5 (2006) 60
    • (2006) Mol. Cancer , vol.5 , pp. 60
    • Ducasse, M.1    Brown, M.A.2
  • 4
    • 0018770221 scopus 로고
    • Isolation and characterization of the nuclear matrix from Zajdela ascites hepatoma cells
    • Berezney R., Basler J., Hughes B.B., and Kaplan S.C. Isolation and characterization of the nuclear matrix from Zajdela ascites hepatoma cells. Cancer Res. 39 (1979) 3031-3039
    • (1979) Cancer Res. , vol.39 , pp. 3031-3039
    • Berezney, R.1    Basler, J.2    Hughes, B.B.3    Kaplan, S.C.4
  • 8
    • 0037089492 scopus 로고    scopus 로고
    • Identification of nuclear matrix protein alterations associated with human colon cancer
    • Brunagel G., Veitmeier B., Bauer A., Schoen R., and Getzenberg R. Identification of nuclear matrix protein alterations associated with human colon cancer. Cancer Res. 62 (2002) 2437-2442
    • (2002) Cancer Res. , vol.62 , pp. 2437-2442
    • Brunagel, G.1    Veitmeier, B.2    Bauer, A.3    Schoen, R.4    Getzenberg, R.5
  • 9
    • 0036793916 scopus 로고    scopus 로고
    • Nuclear matrix protein alterations associated with colon cancer metastasis to the liver
    • Brunagel G., Schoen R.E., Bauer A.J., Vietmeier B.N., and Getzenberg R.H. Nuclear matrix protein alterations associated with colon cancer metastasis to the liver. Clin. Cancer Res. 8 (2002) 3039-3045
    • (2002) Clin. Cancer Res. , vol.8 , pp. 3039-3045
    • Brunagel, G.1    Schoen, R.E.2    Bauer, A.J.3    Vietmeier, B.N.4    Getzenberg, R.H.5
  • 10
    • 0031897088 scopus 로고    scopus 로고
    • Differential nuclear matrix protein expression in prostate cancer: correlation with pathologic stage
    • Lakshmanan Y., Subong E.N.P., and Partin A.W. Differential nuclear matrix protein expression in prostate cancer: correlation with pathologic stage. J. Urol. 159 (1998) 1354-1358
    • (1998) J. Urol. , vol.159 , pp. 1354-1358
    • Lakshmanan, Y.1    Subong, E.N.P.2    Partin, A.W.3
  • 11
    • 0027482813 scopus 로고
    • Chromatin changes in cell transformation: progressive unfolding of the higher-order structure during the evolution of rat hepatocyte nodules. A differential scanning calorimetry study
    • Barboro P., Pasini A., Parodi S., Balbi C., Cavazza B., Allera C., Lazzarini G., and Patrone E. Chromatin changes in cell transformation: progressive unfolding of the higher-order structure during the evolution of rat hepatocyte nodules. A differential scanning calorimetry study. Biophys. J. 65 (1993) 1690-1699
    • (1993) Biophys. J. , vol.65 , pp. 1690-1699
    • Barboro, P.1    Pasini, A.2    Parodi, S.3    Balbi, C.4    Cavazza, B.5    Allera, C.6    Lazzarini, G.7    Patrone, E.8
  • 12
    • 0029899287 scopus 로고    scopus 로고
    • Changes in the cytoskeletal and nuclear matrix proteins in rat hepatocyte neoplastic nodules in their relation to the process of transformation
    • Barboro P., Alberti I., Sanna P., Parodi S., Balbi C., Allera C., and Patrone E. Changes in the cytoskeletal and nuclear matrix proteins in rat hepatocyte neoplastic nodules in their relation to the process of transformation. Exp. Cell Res. 225 (1996) 315-327
    • (1996) Exp. Cell Res. , vol.225 , pp. 315-327
    • Barboro, P.1    Alberti, I.2    Sanna, P.3    Parodi, S.4    Balbi, C.5    Allera, C.6    Patrone, E.7
  • 13
    • 34249774009 scopus 로고    scopus 로고
    • MARs and MARBPs: key modulators of gene regulation and disease manifestation
    • Kundu T.K., and Dasgupta D. (Eds), Springer
    • Chattopadhyay S., and Pavithra L. MARs and MARBPs: key modulators of gene regulation and disease manifestation. In: Kundu T.K., and Dasgupta D. (Eds). Chromatin and Disease (2007), Springer 213-230
    • (2007) Chromatin and Disease , pp. 213-230
    • Chattopadhyay, S.1    Pavithra, L.2
  • 14
    • 0028923173 scopus 로고
    • Lamin proteins form an internal nucleoskeleton as well as a peripheral lamina in human cells
    • Hozàk P., Sasseville A.M., Raymond Y., and Cook P.R. Lamin proteins form an internal nucleoskeleton as well as a peripheral lamina in human cells. J. Cell Sci. 108 (1995) 635-644
    • (1995) J. Cell Sci. , vol.108 , pp. 635-644
    • Hozàk, P.1    Sasseville, A.M.2    Raymond, Y.3    Cook, P.R.4
  • 15
    • 0032909580 scopus 로고    scopus 로고
    • Lamin A is part of the internal nucleoskeleton of human erythroleukemia cells
    • Neri L.M., Raymond Y., Giordano A., Capitani S., and Martelli A.M. Lamin A is part of the internal nucleoskeleton of human erythroleukemia cells. J. Cell Physiol. 178 (1999) 284-295
    • (1999) J. Cell Physiol. , vol.178 , pp. 284-295
    • Neri, L.M.1    Raymond, Y.2    Giordano, A.3    Capitani, S.4    Martelli, A.M.5
  • 16
    • 0027978833 scopus 로고
    • Localization of NuMA protein isoforms in the nuclear matrix of mammalian cells
    • Zeng C., He D., and Brinkley B.R. Localization of NuMA protein isoforms in the nuclear matrix of mammalian cells. Cell Motil. Cytoskelet. 29 (1994) 167-176
    • (1994) Cell Motil. Cytoskelet. , vol.29 , pp. 167-176
    • Zeng, C.1    He, D.2    Brinkley, B.R.3
  • 17
    • 0036403836 scopus 로고    scopus 로고
    • Unraveling the organization of the internal nuclear matrix: RNA-dependent anchoring of NuMA to a lamin scaffold
    • Barboro P., D'Arrigo C., Diaspro A., Mormino M., Alberti I., Parodi S., Patrone E., and Balbi C. Unraveling the organization of the internal nuclear matrix: RNA-dependent anchoring of NuMA to a lamin scaffold. Exp. Cell Res. 279 (2002) 202-218
    • (2002) Exp. Cell Res. , vol.279 , pp. 202-218
    • Barboro, P.1    D'Arrigo, C.2    Diaspro, A.3    Mormino, M.4    Alberti, I.5    Parodi, S.6    Patrone, E.7    Balbi, C.8
  • 19
    • 0023520880 scopus 로고
    • Alternative methods of selecting rat hepatocellular nodules resistant to 2-acetylaminofluorene
    • Semple-Roberts E., Hayes M.A., Armstrong D., Becker R.A., Racz W.J., and Farber E. Alternative methods of selecting rat hepatocellular nodules resistant to 2-acetylaminofluorene. Int. J. Cancer 15 (1987) 643-645
    • (1987) Int. J. Cancer , vol.15 , pp. 643-645
    • Semple-Roberts, E.1    Hayes, M.A.2    Armstrong, D.3    Becker, R.A.4    Racz, W.J.5    Farber, E.6
  • 20
    • 0242554022 scopus 로고
    • Chemical carcinogenesis: the liver is a model
    • Maskens A.R., Ebbesen R., and Burny A. (Eds), Elsevier, Amsterdam
    • Farber E., and Sarma D.S.R. Chemical carcinogenesis: the liver is a model. In: Maskens A.R., Ebbesen R., and Burny A. (Eds). Concepts and Theories in Carcinogenesis (1987), Elsevier, Amsterdam 185-220
    • (1987) Concepts and Theories in Carcinogenesis , pp. 185-220
    • Farber, E.1    Sarma, D.S.R.2
  • 22
    • 0023825124 scopus 로고
    • Improved silver staining procedure for fast staining in PhastSystem Development unit I. Staining of sodium dodecyl sulfate gels
    • Heukeshoven J., and Dernick R. Improved silver staining procedure for fast staining in PhastSystem Development unit I. Staining of sodium dodecyl sulfate gels. Electrophoresis 9 (1988) 28-32
    • (1988) Electrophoresis , vol.9 , pp. 28-32
    • Heukeshoven, J.1    Dernick, R.2
  • 23
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227 (1970) 680-685
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 24
    • 0025910086 scopus 로고
    • DNA binding properties of the nuclear matrix and individual nuclear matrix proteins
    • Hakes D.J., and Berezney R. DNA binding properties of the nuclear matrix and individual nuclear matrix proteins. J. Biol. Chem. 266 (1991) 11131-11140
    • (1991) J. Biol. Chem. , vol.266 , pp. 11131-11140
    • Hakes, D.J.1    Berezney, R.2
  • 28
    • 0017687532 scopus 로고
    • Nuclear Matrix. Isolation and characterization of a framework structure from rat liver nuclei
    • Berezney R., and Coffey D.S. Nuclear Matrix. Isolation and characterization of a framework structure from rat liver nuclei. J. Cell Biol. 73 (1977) 616-637
    • (1977) J. Cell Biol. , vol.73 , pp. 616-637
    • Berezney, R.1    Coffey, D.S.2
  • 29
    • 7044253006 scopus 로고    scopus 로고
    • Role of the nuclear matrix proteins in malignant transformation and cancer diagnosis
    • Sjakste N., Sjakste T., and Vikmanis U. Role of the nuclear matrix proteins in malignant transformation and cancer diagnosis. Exp. Oncol. 26 (2004) 170-178
    • (2004) Exp. Oncol. , vol.26 , pp. 170-178
    • Sjakste, N.1    Sjakste, T.2    Vikmanis, U.3
  • 30
    • 0025633662 scopus 로고
    • Base sequences of highly repetitive components in nuclear DNAs from rat liver and rat-ascites hepatoma
    • Ikeda Y., Nakamura K., Iwakami N., Hibino Y., and Sugano N. Base sequences of highly repetitive components in nuclear DNAs from rat liver and rat-ascites hepatoma. Cancer Lett. 55 (1990) 201-208
    • (1990) Cancer Lett. , vol.55 , pp. 201-208
    • Ikeda, Y.1    Nakamura, K.2    Iwakami, N.3    Hibino, Y.4    Sugano, N.5
  • 31
    • 0035110880 scopus 로고    scopus 로고
    • Experimental observations of a nuclear matrix
    • Nickerson J.A. Experimental observations of a nuclear matrix. J. Cell Sci. 114 (2001) 463-474
    • (2001) J. Cell Sci. , vol.114 , pp. 463-474
    • Nickerson, J.A.1
  • 32
    • 0028168825 scopus 로고
    • Binding of matrix attachment regions to lamin polymers involves single-stranded regions and the minor groove
    • Ludérus M.E., den Blaauwen J.L., de Smit O.J.B., Compton D.A., and van Driel R. Binding of matrix attachment regions to lamin polymers involves single-stranded regions and the minor groove. Mol. Cell. Biol. 14 (1994) 6297-6305
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 6297-6305
    • Ludérus, M.E.1    den Blaauwen, J.L.2    de Smit, O.J.B.3    Compton, D.A.4    van Driel, R.5
  • 34
    • 38949216003 scopus 로고    scopus 로고
    • Nuclear matrix proteins as a cancer markers
    • Davido T., and Getzenberg R.H. Nuclear matrix proteins as a cancer markers. J. Cell. Biochem. Suppl. 35 (2000) 136-141
    • (2000) J. Cell. Biochem. Suppl. , vol.35 , pp. 136-141
    • Davido, T.1    Getzenberg, R.H.2
  • 36
    • 0032843569 scopus 로고    scopus 로고
    • The nuclear matrix in pathology
    • Bosman F.T. The nuclear matrix in pathology. Virchows Arch. 435 (1999) 391-399
    • (1999) Virchows Arch. , vol.435 , pp. 391-399
    • Bosman, F.T.1
  • 39
    • 14644400421 scopus 로고    scopus 로고
    • Satellite DNA binding and cellular localisation of RNA helicase P68
    • Enukashvily N., Donev R., Sheer D., and Podgornaya O. Satellite DNA binding and cellular localisation of RNA helicase P68. J. Cell Sci. 118 (2005) 611-622
    • (2005) J. Cell Sci. , vol.118 , pp. 611-622
    • Enukashvily, N.1    Donev, R.2    Sheer, D.3    Podgornaya, O.4
  • 40
    • 0036090767 scopus 로고    scopus 로고
    • Keratin expression in human tissues and neoplasms
    • Chu P.G., and Weiss L.M. Keratin expression in human tissues and neoplasms. Histopathology 40 (2002) 403-439
    • (2002) Histopathology , vol.40 , pp. 403-439
    • Chu, P.G.1    Weiss, L.M.2
  • 43
    • 17444365501 scopus 로고    scopus 로고
    • Expression of heat shock proteins (HSP27, HSP60, HSP70, HSP90, GRP78, GRP94) in hepatitis B virus-related hepatocellular carcinomas and dysplastic nodules
    • Lim S.O., Park S.G., Yoo J.H., Park Y.M., Kim H.J., Jang K.T., Cho J.W., Yoo B.C., Jung G.H., and Park C.K. Expression of heat shock proteins (HSP27, HSP60, HSP70, HSP90, GRP78, GRP94) in hepatitis B virus-related hepatocellular carcinomas and dysplastic nodules. World J. Gastroenterol. 11 (2005) 2072-2079
    • (2005) World J. Gastroenterol. , vol.11 , pp. 2072-2079
    • Lim, S.O.1    Park, S.G.2    Yoo, J.H.3    Park, Y.M.4    Kim, H.J.5    Jang, K.T.6    Cho, J.W.7    Yoo, B.C.8    Jung, G.H.9    Park, C.K.10
  • 44
    • 35648963627 scopus 로고    scopus 로고
    • Proteome analysis of hepatocellular carcinoma by two-dimensional difference gel electrophoresis: novel protein markers in hepatocellular carcinoma tissues
    • Sun W., Xing B., Sun Y., Du X., Lu M., Hao C., Lu Z., Mi W., Wu S., Wei H., Gao X., Zhu Y., Jiang Y., Qian X., and He F. Proteome analysis of hepatocellular carcinoma by two-dimensional difference gel electrophoresis: novel protein markers in hepatocellular carcinoma tissues. Mol. Cell. Proteomics 6 (2007) 1798-1808
    • (2007) Mol. Cell. Proteomics , vol.6 , pp. 1798-1808
    • Sun, W.1    Xing, B.2    Sun, Y.3    Du, X.4    Lu, M.5    Hao, C.6    Lu, Z.7    Mi, W.8    Wu, S.9    Wei, H.10    Gao, X.11    Zhu, Y.12    Jiang, Y.13    Qian, X.14    He, F.15
  • 45
    • 0037223571 scopus 로고    scopus 로고
    • Expression profiling in multistage hepatocarcinogenesis: identification of HSP70 as a molecular marker of early hepatocellular carcinoma
    • Chuma M., Sakamoto M., Yamazaki K., Ohta T., Ohki M., Asaka M., and Hirohashi S. Expression profiling in multistage hepatocarcinogenesis: identification of HSP70 as a molecular marker of early hepatocellular carcinoma. Hepatology 37 (2003) 198-207
    • (2003) Hepatology , vol.37 , pp. 198-207
    • Chuma, M.1    Sakamoto, M.2    Yamazaki, K.3    Ohta, T.4    Ohki, M.5    Asaka, M.6    Hirohashi, S.7
  • 46
    • 0036282608 scopus 로고    scopus 로고
    • Chromatin (dis)organization and cancer: BUR-binding proteins as biomarkers for cancer
    • Galande S. Chromatin (dis)organization and cancer: BUR-binding proteins as biomarkers for cancer. Curr. Cancer Drug Targets 2 (2002) 157-190
    • (2002) Curr. Cancer Drug Targets , vol.2 , pp. 157-190
    • Galande, S.1
  • 47
    • 0024820573 scopus 로고
    • Specific inhibition of DNA binding to nuclear scaffolds and histone H1 by distamycin. The role of oligo (dA), oligo (dT) tracts
    • Käs E., Izaurralde E., and Laemmli U.K. Specific inhibition of DNA binding to nuclear scaffolds and histone H1 by distamycin. The role of oligo (dA), oligo (dT) tracts. J. Mol. Biol. 210 (1989) 587-599
    • (1989) J. Mol. Biol. , vol.210 , pp. 587-599
    • Käs, E.1    Izaurralde, E.2    Laemmli, U.K.3
  • 48
    • 0027396087 scopus 로고
    • A model for chromatin opening: stimulation of topoisomerase II and restriction enzyme cleavage of chromatin by distamycin
    • Käs E., Poljack L., Adachi Y., and Laemmli U.K. A model for chromatin opening: stimulation of topoisomerase II and restriction enzyme cleavage of chromatin by distamycin. EMBO J. 12 (1993) 115-126
    • (1993) EMBO J. , vol.12 , pp. 115-126
    • Käs, E.1    Poljack, L.2    Adachi, Y.3    Laemmli, U.K.4
  • 49
    • 0030971868 scopus 로고    scopus 로고
    • Components of the human SWI/SNF complex are enriched in active chromatin and are associated with the nuclear matrix
    • Reyes J.C., Muchardt C., and Yaniv M. Components of the human SWI/SNF complex are enriched in active chromatin and are associated with the nuclear matrix. J. Cell Biol. 137 (1997) 263-274
    • (1997) J. Cell Biol. , vol.137 , pp. 263-274
    • Reyes, J.C.1    Muchardt, C.2    Yaniv, M.3
  • 50
    • 0032726352 scopus 로고    scopus 로고
    • Chromatin condensation is confined to the loop and involves an all-or-none structural change
    • Balbi C., Sanna P., Barboro P., Alberti I., Barbesino M., and Patrone E. Chromatin condensation is confined to the loop and involves an all-or-none structural change. Biophys. J. 77 (1999) 2725-2735
    • (1999) Biophys. J. , vol.77 , pp. 2725-2735
    • Balbi, C.1    Sanna, P.2    Barboro, P.3    Alberti, I.4    Barbesino, M.5    Patrone, E.6
  • 51
    • 0242287927 scopus 로고    scopus 로고
    • The eukaryotic genome: a system regulated at different hierarchical levels
    • van Driel R., Fransz P.F., and Verschure P.J. The eukaryotic genome: a system regulated at different hierarchical levels. J. Cell Sci. 116 (2003) 4067-4075
    • (2003) J. Cell Sci. , vol.116 , pp. 4067-4075
    • van Driel, R.1    Fransz, P.F.2    Verschure, P.J.3
  • 52
    • 0034447630 scopus 로고    scopus 로고
    • Linking chromatin architecture to cellular phenotype: BUR-binding proteins in cancer
    • Galande S., and Kohwi-Shigematsu T. Linking chromatin architecture to cellular phenotype: BUR-binding proteins in cancer. J. Cell. Biochem. Suppl. 35 (2000) 36-45
    • (2000) J. Cell. Biochem. Suppl. , vol.35 , pp. 36-45
    • Galande, S.1    Kohwi-Shigematsu, T.2
  • 53
    • 40749094918 scopus 로고    scopus 로고
    • SATB1 reprogrammes gene expression to promote breast tumour growth and metastasis
    • Han H.J., Russo J., Kohwi Y., and Kohwi-Shigematsu T. SATB1 reprogrammes gene expression to promote breast tumour growth and metastasis. Nature 452 (2008) 187-193
    • (2008) Nature , vol.452 , pp. 187-193
    • Han, H.J.1    Russo, J.2    Kohwi, Y.3    Kohwi-Shigematsu, T.4


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