Choice of topology estimators in Bayesian phylogenetic analysis

Molecular Biology and Evolution

Volumn 26, Issue 1, 2009, Pages 1-3

  Sukumaran, Jeet ^a   Linkem, Charles W ^a  

^a UNIVERSITY OF KANSAS   (United States)

Author keywords

Bayesian phylogenetics; Summaries; Support; Topology estimators

Indexed keywords

ARTICLE; BAYES THEOREM; MOLECULAR BIOLOGY; MOLECULAR EVOLUTION; PHYLOGENY;

BAYES THEOREM; EVOLUTION, MOLECULAR; MODELS, GENETIC; PHYLOGENY;

EID: 57749186063     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msn250     Document Type: Article

References (9)

1. Brandley MC, Leaché A, Warren D, McGuire J. 2006. Are unequal clade priors problematic for Bayesian phylogenetics? Syst Biol. 55:138-146.
2. Felsenstein J. 2004. Inferring phylogenies. Sunderland (MA): Sinauer Associates, Inc.
3. Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics. 17:754-755.
4. Larget B, Simon DL. 1999. Markov Chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees. Mol Biol Evol. 16:750-759.
5. Lutzoni F, Pagel M, Reeb V. 2001. Major fungal lineages are derived from lichen symbiotic ancestors. Nature. 411:937-940.
6. O'Hagan A, Forster J. 2004. Kendall's advanced theory of statistics. Volume 2B: Bayesian inference, 2nd ed. London: Arnold Publishers.
7. Velasco JD. 2007. Why non-uniform priors on clades are both unavoidable and unobjectionable. Mol Phylogenet Evol. 45:748-749.
8. Wheeler WC, Pickett KM. 2008. Topology-Bayes versus clade-Bayes in phylogenetic analysis. Mol Biol Evol. 25:447-453.
9. Yang Z. 2006. Computational molecular evolution. Oxford: Oxford University Press.