Reciprocal Pleistocene origin and postglacial range formation of an allopolyploid and its sympatric ancestors (Androsace adfinis group, Primulaceae)

Molecular Phylogenetics and Evolution

Volumn 50, Issue 1, 2009, Pages 74-83

  Dixon, Christopher J ^a   Schönswetter, Peter ^a   Suda, Jan ^b,c   Wiedermann, Magdalena M ^d   Schneeweiss, Gerald M ^a  

^a UNIVERSITY OF VIENNA   (Austria)

^b CHARLES UNIVERSITY   (Czech Republic)

^c INSTITUTE OF MATHEMATICS   (Czech Republic)

^d UMEÅ UNIVERSITY   (Sweden)

Author keywords

Admixture; Allopolyploid; Androsace brigantiaca; Phylogeography; Reciprocal origin

Indexed keywords

PLANT DNA;

ARTICLE; CLASSIFICATION; EUROPE; GENETICS; NUCLEIC ACID DATABASE; PHYLOGENY; PLOIDY; POLYPLOIDY; PRIMULACEAE; TIME;

DATABASES, NUCLEIC ACID; DNA, PLANT; EUROPE; PHYLOGENY; PLOIDIES; POLYPLOIDY; PRIMULACEAE; TIME FACTORS;

ANDROSACE; ANDROSACE ADFINIS; PRIMULACEAE;

EID: 57649192789     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2008.10.009     Document Type: Article

References (85)

1. Abbott R.J., and Brochmann C. History and evolution of the arctic flora: in the footsteps of Eric Hultén. Mol. Ecol. 12 (2003) 299-313
2. Althoff D.M., Gitzendanner M.A., and Segraves K.A. The utility of amplified fragment length polymorphisms in phylogenetics: a comparison of homology within and between genomes. Syst. Biol. 56 (2007) 477-484
3. Baack E.J., and Stanton M.L. Ecological factors influencing tetraploid speciation in snow buttercups (Ranunculus adoneus): niche differentiation and tetraploid establishment. Evolution 50 (2005) 1936-1944
4. Bonin A., Bellemain E., Bronken Eidesen P., Pompanon F., Brochmann C., and Taberlet P. How to track and assess genotyping errors in population genetics studies. Mol. Ecol. 13 (2004) 3261-3273
5. Brochmann C., Soltis P.S., and Soltis D.E. Recurrent formation and polyphyly of Nordic polyploids in Draba (Brassicaceae). Amer. J. Bot. 79 (1992) 673-688
6. Brochmann C., Brysting A.K., Alsos I.G., Borgen L., Grundt H.H., Scheen A.C., and Elven R. Polyploidy in arctic plants. Biol. J. Linn. Soc. 82 (2004) 521-536
7. Bryant D., and Moulton V. NeighborNet: an agglomerative algorithm for the construction of phylogenetic networks. Mol. Biol. Evol. 21 (2004) 255-265
8. Bussell J.D., Waycott M., and Chappill J.A. Arbitrarily amplified DNA markers as characters for phylogenetic inference. Persp. Plant Ecol. Evol. Syst. 7 (2005) 3-26
9. Chas, E., 1994. Atlas de la flore des Hautes Alpes. Conservatoire botanique nationale de Gap-Charance, Conservatoire des espaces naturels de Provence et des Alpes du Sud, Parc National des Ecrins, Gap.
10. Clement M., Posada D., and Crandall K.A. TCS: a computer program to estimate gene genealogies. Mol. Ecol. 9 (2000) 1657-1660
11. Corander J., and Marttinen P. Bayesian identification of admixture events using multi-locus molecular markers. Mol. Ecol. 15 (2006) 2833-2843
12. Coyne J.A., and Orr H.A. Speciation (2004), Sinauer, Sunderland, MA
13. Demesure B., Sodzi N., and Petit R.J. A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants. Mol. Ecol. 4 (1995) 129-131
14. Devos N., Raspé O., Oh S.H., Tyteca D., and Jacquemart A.L. The evolution of Dactylorhiza (Orchidaceae) allotetraploid complex: insights from nrDNA sequences and cpDNA PCR-RFLP data. Mol. Phylogenet. Evol. 38 (2006) 767-778
15. Diadema K., Bretagnolle F., Affre L., Yuan Y.M., and Medail F. Geographic structure of molecular variation of Gentiana ligustica (Gentianaceae) in the Maritime and Ligurian regional hotspot, inferred from ITS sequences. Taxon 54 (2005) 887-894
16. Dixon C.J. A means of estimating the completeness of haplotype sampling using the stirling probability distribution. Mol. Ecol. Notes 6 (2006) 650-652
17. Dixon C.J., Schönswetter P., and Schneeweiss G.M. Traces of ancient range shifts in a mountain plant group (Androsace halleri complex, Primulaceae). Mol. Ecol. 16 (2007) 3890-3901
18. Dixon C.J., Schönswetter P., and Schneeweiss G.M. Morphological and geographical evidence are misleading with respect to the phylogenetic position and origin of the narrow endemic polyploid Androsace cantabrica (Primulaceae). Syst. Bot. 33 (2008) 384-389
19. Dobeš C.H., Mitchell-Olds T., and Koch M.A. Extensive chloroplast haplotype variation indicates Pleistocene hybridization and radiation of North American Arabis drummondii, A. ×divaricarpa, and A. holboellii (Brassicaceae). Mol. Ecol. 13 (2004) 349-370
20. Doyle J.J., and Doyle J.L. A rapid DNA isolation procedure for small amounts of fresh leaf tissue. Phytochem. Bull. 19 (1987) 11-15
21. Drummond A.J., and Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7 (2007) 214 10.1186/1471-2148-7-214
22. Drummond A.J., Rambaut A., Shapiro B., and Pybus O.G. Bayesian coalescent inference of past population dynamics from molecular sequences. Mol. Biol. Evol. 22 (2005) 1185-1192
23. Dumolin-Lapegue S., Pemonge M.H., and Petit R.J. An enlarged set of consensus primers for the study of organelle DNA in plants. Mol. Ecol. 6 (1997) 393-397
24. Ehrendorfer, F., 1958. Die geographische und ökologische Entfaltung des europäisch-alpinen Polyploidkomplexes Galium anisophyllum Vill. seit Beginn des Quartärs. Uppsala Univ. Årsskr. 6, 176-181.
25. Evans B.J., Kelley D.B., Tinsley R., Melnick D.J., and Cannatella D.C. A mitochondrial DNA phylogeny of African clawed frogs: phylogeography and implications for polyploid evolution. Mol. Phylogenet. Evol. 33 (2004) 197-213
26. Favarger C. Contribution à l'étude cytologique des genres Androsace et Gregoria. Veröff. Geobot. Inst. Rübel Zürich 33 (1958) 59-80
27. Favarger C. Notes de caryologie alpine IV. Bull. Soc. Neuchâtel. Sci. Nat. 88 (1965) 5-60
28. Favarger C. Notes de caryologie alpine V. Bull. Soc. Neuchâtel. Sci. Nat. 92 (1969) 13-30
29. Felber-Girard M., Felber F., and Buttler A. Habitat differentiation in a narrow hybrid zone between diploid and tetraploid Anthoxanthum alpinum. New Phytol. 133 (1996) 531-540
30. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41 (1999) 95-98
31. Hamilton M.B. Four primer pairs for the amplification of chloroplast intergenic regions with intraspecific variation. Mol. Ecol. 8 (1999) 521-523
32. Harris S.A., and Ingram R. Chloroplast DNA and biosystematics: the effects of intraspecific diversity and plastid transmission. Taxon 40 (1991) 393-412
33. Hess D., Landolt E., and Hirzel R. Flora der Schweiz und angrenzender Gebiete 2: Nymphaeaceae bis Primulaceae (1970), Birkhäuser, Basel
34. Huson D.H., and Bryant D. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23 (2006) 254-267
35. Ingvarsson P.K., Ribstein S., and Taylor D.R. Molecular evolution of insertions and deletion in the chloroplast genome of Silene. Mol. Biol. Evol. 20 (2003) 1737-1740
36. Kelchner S.A., and Wendel J.F. Hairpins create minute inversions in non-coding regions of chloroplast DNA. Curr. Genet. 30 (1996) 259-262
37. Koch M., Dobeš C., and Mitchell-Olds T. Multiple hybrid formation in natural populations: concerted evolution of the internal transcribed spacer of nuclear ribosomal DNA (ITS) in North American Arabis divaricarpa (Brassicaceae). Mol. Biol. Evol. 20 (2003) 338-350
38. Kovarik A., Pires J.C., Leitch A.R., Lim K.Y., Sherwood A., Matyasek R., Rocca J., Soltis D.E., and Soltis P.S. Rapid concerted evolution of nuclear ribosomal DNA in two Tragopogon allopolyploids of recent and recurrent origin. Genetics 169 (2005) 931-944
39. Kress A. Chromosomenzählungen an verschiedenen Primulaceen. Primulaceen-Studien 3 (1984) 1-32
40. Kress, A., 1984b. Pollenkorngrößen und Polyploidiestufen bei Androsace adfinis s.l. sowie bei A. halleri und deren nächsten Verwandten. Primulaceen-Studien 4-5, 1-10.
41. Kress A. Androsace carnea L. s.l.: Eine taxonomische Analyse der Androsace adfinis Biroli s.l. und der Sippengruppe um Androsace halleri L. Teil 1 & 2. Primulaceen-Studien 6 1-2 (1984) 1-100
42. Kress A. Androsace carnea L. s.l.: Eine taxonomische Analyse der Androsace adfinis Biroli s.l. und der Sippengruppe um Androsace halleri L. Teil 3. Primulaceen-Studien 6 3 (1991) 1-50
43. Leitch I.J., and Bennett M.D. Genome downsizing in polyploid plants. Biol. J. Linn. Soc. 82 (2004) 651-663
44. Löve A., and Solbrig O.T. IOPB chromosome number reports II. Taxon 13 (1964) 201-209
45. Luttikhuizen P.C., Stift M., Kuperus P., and van Tienderen P.H. Genetic diversity in diploid vs. tetraploid Rorippa amphibia (Brassicaceae). Mol. Ecol. 16 (2007) 3544-3553
46. Maceira N.O., Jacquard P., and Lumaret R. Competition between diploid and derivative autotetraploid Dactylis glomerata L. from Galicia. Implications for the establishment of novel polyploid populations. New Phytol. 124 (1993) 321-328
47. Nei M., and Li W.H. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. USA 76 (1979) 5269-5273
48. Nelson A.D., and Elisens W.J. Polyploid evolution and biogeography in Chelone (Scrophulariaceae): morphological and isozyme evidence. Amer. J. Bot. 86 (1999) 1487-1501
49. Novak S.J., Soltis D.E., and Soltis P.S. Ownbey's Tragopogons: 40 years later. Amer. J. Bot. 78 (1991) 1586-1600
50. Nuismer S.L., and Thompson J.N. Plant polyploidy and non-uniform effects on insect herbivores. Proc. R. Soc. Lond. Ser. B 268 (2001) 1937-1940
51. Otto C.R.V., Snodgrass J.W., Forester D.C., Mitchell J.C., and Miller R.W. Climatic variation and the distribution of an amphibian polyploid complex. J. Anim. Ecol. 76 (2007) 1053-1061
52. Otto S.P., and Whitton J. Polyploid incidence and evolution. Annu. Rev. Genet. 34 (2000) 401-437
53. Paun O., Lehnebach C., Johansson J.T., Lockhart P., and Hörandl E. Phylogenetic relationships and biogeography of Ranunculus and allied genera (Ranunculaceae) in the Mediterranean region and in the European Alpine System. Taxon 54 (2005) 911-930
54. Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
55. Quandt D., Müller K., and Huttunen S. Characterisation of the chloroplast DNA psbT-H region and the influence of dyad symmetrical elements on phylogenetic reconstructions. Plant Biol. 5 (2003) 400-410
56. Reeves P.A., and Richards C.M. Distinguishing terminal monophyletic groups from reticulate taxa: performance of phenetic, tree-based, and network procedures. Syst. Biol. 56 (2007) 302-320
57. Schneeweiss G.M., Schönswetter P., Kelso S., and Niklfeld H. Complex biogeographic patterns in Androsace (Primulaceae) and related genera: evidence from phylogenetic analyses of nuclear internal transcribed spacer and plastid trnL-F sequences. Syst. Biol. 53 (2004) 856-876
58. Schönswetter P., and Tribsch A. Vicariance and dispersal in the alpine perennial Bupleurum stellatum L. (Apiaceae). Taxon 54 (2005) 725-732
59. Schönswetter P., Tribsch A., Barfuss M., and Niklfeld H. Several Pleistocene refugia detected in the high alpine plant Phyteuma globulariifolium Sternb. & Hoppe (Campanulaceae) in the European Alps. Mol. Ecol. 11 (2002) 2637-2647
60. Schönswetter P., Stehlik I., Holderegger R., and Tribsch A. Molecular evidence for glacial refugia of mountain plants in the European Alps. Mol. Ecol. 14 (2005) 3547-3555
61. Schönswetter P., Suda J., Popp M., Weiss-Schneeweiss H., and Brochmann C. Circumpolar phylogeography of Juncus biglumis (Juncaceae) inferred from AFLP fingerprints, cpDNA sequences, nuclear DNA content and chromosome numbers. Mol. Phylogenet. Evol. 42 (2007) 92-103
62. Schönswetter P., Lachmayer M., Lettner C., Prehsler D., Rechnitzer S., Reich D.S., Sonnleitner M., Wagner I., Hülber K., Schneeweiss G.M., Trávníček P., and Suda J. Sympatric diploid and hexaploid cytotypes of Eastern Alpine Senecio carniolicus (Asteraceae) are separated along an altitudinal gradient. J. Plant Res. 120 (2007) 721-725
63. Segraves K.A., Thompson J.N., Soltis P.S., and Soltis D.E. Multiple origins of polyploidy and the geographic structure of Heuchera grossulariifolia. Mol. Ecol. 8 (1999) 253-262
64. Sharbel T.F., and Mitchell-Olds T. Recurrent polyploid origins and chloroplast phylogeography in the Arabis holboellii complex (Brassicaceae). Heredity 87 (2001) 59-68
65. Smith G., and Lowe D. The Genus Androsace (1997), Alpine Garden Society, Pershore, UK
66. Soltis D.E., and Soltis P.S. Allopolyploid speciation in Tragopogon: insights from chloroplast DNA. Amer. J. Bot. 76 (1989) 1119-1124
67. Soltis D.E., and Soltis P.S. Polyploidy: recurrent formation and genome evolution. Trends Ecol. Evol. 14 (1999) 348-352
68. Soltis D.E., Soltis P.S., and Tate J.A. Advances in the study of polyploidy since Plant Speciation. New Phytol. 161 (2004) 173-191
69. Soltis D.E., Soltis P.S., Pires J.C., Kovarik A., Tate J.A., and Mavrodiev E. Recent and recurrent polyploidy in Tragopogon (Asteraceae): cytogenetic, genomic, and genetic comparisons. Biol. J. Linn. Soc. 82 (2004) 485-501
70. Stebbins G.L. Polyploidy and the distribution of the arctic-alpine flora: new evidence and a new approach. Bot. Helv. 94 (1984) 1-13
71. Stebbins G.L. Polyploidy, hybridization, and the invasion of new habitats. Ann. Miss. Bot. Gard. 72 (1985) 824-832
72. Stuessy T.F., Weiss-Schneeweiss H., and Keil D.J. Diploid and polyploid cytotype distribution in Melampodium cinereum and M. leucanthum (Asteraceae, Heliantheae). Amer. J. Bot. 91 (2004) 889-898
73. Suda J., and Trávníček P. Reliable DNA ploidy determination in dehydrated tissues of vascular plants by DAPI flow cytometry-new prospects for plant research. Cytometry 69A (2006) 273-280
74. Suda J., Krahulcová A., Trávníček P., and Krahulec F. Ploidy level versus DNA ploidy level: an appeal for consistent terminology. Taxon 55 (2006) 447-450
75. Tate J.A., Ni Z., Scheen A.C., Koh J., Gilbert C.A., Lefkowitz D., Chen Z.J., Soltis P.S., and Soltis D.E. Evolution and expression of homologous loci in Tragopogon miscellus (Asteraceae), a recent and reciprocally formed allopolyploid. Genetics 173 (2006) 1599-1611
76. Thompson J.N., and Merg K.F. Evolution of polyploidy and the diversification of plant-pollinator interactions. Ecology 89 (2008) 2197-2206
77. Thompson J.N., Nuismer S.L., and Merg K. Plant polyploidy and the evolutionary ecology of plant/animal interactions. Biol. J. Linn. Soc. 82 (2004) 511-519
78. Thompson S.L., and Whitton J. Patterns of recurrent evolution and geographic parthenogenesis within apomictic polyploid Easter daises (Townsendia hookeri). Mol. Ecol. 15 (2006) 3389-3400
79. Tremetsberger K., König C., Samuel R., Pinsker W., and Stuessy T.F. Infraspecific genetic variation in Biscutella laevigata (Brassicaceae): new focus on Irene Manton's hypothesis. Plant Syst. Evol. 233 (2002) 163-181
80. Trewick S.A., Morgan-Richards M., Russell S.J., Henderson S., Rumsey F.J., Pintér I., Barrett J.A., Gibby M., and Vogel J.C. Polyploidy, phylogeography and Pleistocene refugia of the rockfern Asplenium ceterach: evidence from chloroplast DNA. Mol. Ecol. 11 (2002) 2003-2012
81. Van de Peer Y., and de Wachter R. Construction of evolutionary distance trees with TREECON for Windows: accounting for variation in nucleotide substitution rate among sites. Comp. Appl. Biosci. 13 (1997) 227-230
82. Vilatersana R., Brysting A.K., and Brochmann C. Molecular evidence for hybrid origins of the invasive polyploids Carthamus creticus and C. turkestanicus (Cardueae, Asteraceae). Mol. Phylogenet. Evol. 44 (2007) 610-621
83. Weising K., and Gardner R.C. A set of conserved PCR primers for the analysis of simple sequence repeat polymorphisms in chloroplast genomes of dicotyledonous angiosperms. Genome 42 (1999) 9-19
84. Yamane K., Yasui Y., and Ohnishi O. Intraspecific cpDNA variations of diploid and tetraploid perennial buckwheat, Fagopyrum cymosum (Polygonaceae). Amer. J. Bot. 90 (2003) 339-346
85. Zuker M., Mathews D.H., and Turner D.H. Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide. In: Barciszewski J., and Clark B.F.C. (Eds). RNA Biochemistry and Biotechnology (NATO Science Series 3. High Technology 70) (1999), Kluwer, Dordrecht, The Netherlands 11-44