Proteome approaches combined with Fourier transform infrared spectroscopy revealed a distinctive biofilm physiology in Bordetella pertussis

Proteomics

Volumn 8, Issue 23-24, 2008, Pages 4995-5010

  Serra, Diego Omar ^a   Lücking, Genia ^b   Weiland, Florian ^b   Schulz, Stefan ^c   Görg, Angelika ^b   Yantorno, Osvaldo Miguel ^a   Ehling Schulz, Monika ^b,d  

^a Universidad Nacional de La Plata   (Argentina)

^b TECHNICAL UNIVERSITY OF MUNICH   (Germany)

^c Stefan Schulz Datensysteme   (Germany)

^d UNIVERSITY OF VETERINARY MEDICINE   (Austria)

Author keywords

Biofilm; Bordetella pertussis; FT IR spectroscopy

Indexed keywords

ALCIAN BLUE; POLYMER; POLYSACCHARIDE; PROTEOME;

ARTICLE; BACTERIAL VIRULENCE; BIOFILM; BIOSYNTHESIS; BORDETELLA PERTUSSIS; CELL ADHESION; FOURIER TRANSFORMATION; INFRARED SPECTROSCOPY; MICROSCOPY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; STAINING;

ALCIAN BLUE; BACTERIAL PROTEINS; BIOFILMS; BORDETELLA PERTUSSIS; CARBOHYDRATE METABOLISM; KINETICS; MICROSPHERES; MULTIVARIATE ANALYSIS; PLANKTON; POLYPROPYLENES; PRINCIPAL COMPONENT ANALYSIS; PROTEOME; PROTEOMICS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; STAINING AND LABELING; SUBCELLULAR FRACTIONS;

BACTERIA (MICROORGANISMS); BORDETELLA PERTUSSIS;

EID: 57649170771     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200800218     Document Type: Article

References (54)

1. Cherry, J. D., The epidemiology of pertussis: A comparison of the epidemiology of the disease pertussis with the epidemiology of Bordetella pertussis infection. Pediatrics 2005, 115, 1422-1427.
2. Serra, D., Bosch, A., Russo, D. M., Rodriguez, M. E. et al., Continuous nondestructive monitoring of Bordetella pertussis biofilms by Fourier transform infrared spectroscopy and other corroborative techniques. Anal. Bioanal. Chem. 2007, 387, 1759-1767.
3. Sloan, G. P., Love, C. F., Sukumar, N., Mishra, M., Deora, R., The Bordetella Bps polysaccharide is critical for biofilm development in the mouse respiratory tract. J. Bacteriol. 2007, 189, 8270-8276.
4. Irie, Y., Mattoo, S., Yuk, M. H., The Bvg virulence control system regulates biofilm formation in Bordetella bronchiseptica. J. Bacteriol. 2004, 186, 5692-5698.
5. Costerton, J. W., Stewart, P. S., Greenberg, E. P., Bacterial biofilms: A common cause of persistent infections. Science 1999, 284, 1318-1322.
6. Hall-Stoodley, L., Costerton, J. W., Stoodley, P., Bacterial biofilms: From the natural environment to infectious diseases. Nat. Rev. Microbiol. 2004, 2, 95-108.
7. Mattoo, S., Cherry, J. D., Molecular pathogenesis, epidemiology, and clinical manifestations of respiratory infections due to Bordetella pertussis and other Bordetella subspecies. Clin. Microbiol. Rev. 2005, 18, 326-382.
8. Donlan, R. M., Costerton, J. W., Biofilms: Survival mechanisms of clinically relevant microorganisms. Clin. Microbiol. Rev. 2002, 15, 167-193.
9. Beloin, C., Valle, J., Latour-Lambert, P., Faure, P. et al., Global impact of mature biofilm lifestyle on Escherichia coli K-12 gene expression. Mol. Microbiol. 2004, 51, 659-674.
10. Waite, R. D., Papakonstantinopoulou, A., Littler, E., Curtis, M. A., Transcriptome analysis of Pseudomonas aeruginosa growth: Comparison of gene expression in planktonic cultures and developing and mature biofilms. J. Bacteriol. 2005, 187, 6571-6576.
11. Spoering, A. L., Lewis, K., Biofilms and planktonic cells of Pseudomonas aeruginosa have similar resistance to killing by antimicrobials. J. Bacteriol. 2001, 183, 6746-6751.
12. Ghigo, J. M., Are there biofilm-specific physiological pathways beyond a reasonable doubt? Res. Microbiol. 2003, 154, 1-8.
13. Nandakumar, R., Nandakumar, M. P., Marten, M. R., Ross, J. M., Proteome analysis of membrane and cell wall associated proteins from Staphylococcus aureus. J. Proteome Res. 2005, 4, 250-257.
14. Tremoulet, F., Duche, O., Namane, A., Martinie, B., Labadie, J. C., A proteomic study of Escherichia coli O157:H7 NCTC 12900 cultivated in biofilm or in planktonic growth mode. FEMS Microbiol. Lett. 2002, 215, 7-14.
15. Marengo, E., Robotti, E., Bobba, M., Multivariate statistical tools for the evaluation of proteomic 2D-maps: Recent achievements and applications. Curr. Proteomics 2007, 4, 53-66.
16. Vilain, S., Cosette, P., Hubert, M., Lange, C. et al., Comparative proteomic analysis of planktonic and immobilized Pseudomonas aeruginosa cells: A multivariate statistical approach. Anal. Biochem. 2004, 329, 120-130.
17. Vilain, S., Brozel, V. S., Multivariate approach to comparing whole-cell proteomes of Bacillus cereus indicates a biofilm-specific proteome. J. Proteome Res. 2006, 5, 1924-1930.
18. Naumann, D., Helm, D., Labischinski, H., Microbiological characterizations by FT-IR spectroscopy. Nature 1991, 351, 81-82.
19. Nichols, P. D., Henson, J. M., Guckert, J. B., Nivens, D. E., White, D. C., Fourier transform-infrared spectroscopic methods for microbial ecology: Analysis of bacteria, bacteria-polymer mixtures and biofilms. J. Microbiol. Methods 1985, 4, 79-94.
20. Mishra, M., Parise, G., Jackson, K. D., Wozniak, D. J., Deora, R., The BvgAS signal transduction system regulates biofilm development in Bordetella. J. Bacteriol. 2005, 187, 1474-1484.
21. Bosch, A., Serra, D., Prieto, C., Schmitt, J. et al., Characterization of Bordetella pertussis growing as biofilm by chemical analysis and FT-IR spectroscopy. Appl. Microbiol. Biotechnol. 2006, 71, 736-747.
22. Parise, G., Mishra, M., Itoh, Y., Romeo, T., Deora, R., Role of a putative polysaccharide locus in Bordetella biofilm development. J. Bacteriol. 2007, 189, 750-760.
23. Naumann, D., Infrared spectroscopy in microbiology. In Encyclopedia of Analytical Chemistry, Wiley, Chichester 2000, pp. 102-131.
24. Ehling-Schulz, M., Schulz, S., Wait, R., Görg, A., Scherer, S., The UV-B stimulon of the terrestrial cyanobacterium Nostoc commune comprises early shock proteins and late acclimation proteins. Mol. Microbiol. 2002, 46, 827-843.
25. Turlin, E., Pascal, G., Rousselle, J. C., Lenormand, P. et al., Proteome analysis of the phenotypic variation process in Photorhabdus luminescens. Proteomics 2006, 6, 2705-2725.
26. Görg, A., Obermaier, C., Boguth, G., Harder, A. et al., The current state of two-dimensional electrophoresis with immobilized pH gradients. Electrophoresis 2000, 21, 1037-1053.
27. Görg, A., Weiss, W., Dunn, M. J., Current two-dimensional electrophoresis technology for proteomics. Proteomics 2004, 4, 3665-3685.
28. Manly, B. F. J., Multivariate Statistical Methods: A Primer, 2nd Edn, Chapman & Hall, London 1994.
29. Kacuráková, M., Capek, P., Sasinkova, V., Wellner, N., Ebringerová, A., FT-IR study of plant cell wall model compounds: Pectic polysaccharides and hemicelluloses. Carbohydr. Polym. 2000, 43, 195-203.
30. Nivens, D. E., Ohman, D. E., Williams, J., Franklin, M. J., Role of alginate and its O acetylation in formation of Pseudomonas aeruginosa microcolonies and biofilms. J. Bacteriol. 2001, 183, 1047-1057.
31. Synytsya, A., Copikova, J., Matejka, P., Machovic, V., Fourier transform Raman and infrared spectroscopy of pectins. Carbohydr. Polym. 2003, 54, 97-106.
32. Moreno, J., Vargas, M. A., Madiedo, J. M., Munoz, J. et al., Chemical and rheological properties of an extracellular polysaccharide produced by the cyanobacterium Anabaena sp. ATCC 33047. Biotechnol. Bioeng. 2000, 67, 283-290.
33. Tremoulet, F., Duche, O., Namane, A., Martinie, B., Labadie, J. C., Comparison of protein patterns of Listeria monocytogenes grown in biofilm or in planktonic mode by proteomic analysis. FEMS Microbiol. Lett. 2002, 210, 25-31.
34. Resch, A., Leicht, S., Saric, M., Pasztor, L. et al., Comparative proteome analysis of Staphylococcus aureus biofilm and planktonic cells and correlation with transcriptome profiling. Proteomics 2006, 6, 1867-1877.
35. Mikkelsen, H., Duck, Z., Lilley, K. S., Welch, M., Interrelationships between colonies, biofilms, and planktonic cells of Pseudomonas aeruginosa. J. Bacteriol. 2007, 189, 2411-2416.
36. Whiteley, M., Bangera, M. G., Bumgarner, R. E., Parsek, M. R. et al., Gene expression in Pseudomonas aeruginosa biofilms. Nature 2001, 413, 860-864.
37. Hancock, R. E., A brief on bacterial biofilms. Nat. Genet. 2001, 29, 360.
38. Jouenne, T., Vilain, S., Cosette, P., Junter, G. A., Proteomics of biofilm bacteria. Curr. Proteomics 2004, 1, 211-219.
39. Parkhill, J., Sebaihia, M., Preston, A., Murphy, L. D. et al., Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. Nat. Genet. 2003, 35, 32-40.
40. Virlogeux, I., Waxin, H., Ecobichon, C., Popoff, M. Y., Role of the viaB locus in synthesis, transport and expression of Salmonella typhi Vi antigen. Microbiology 1995, 141, 3039-3047.
41. Branda, S. S., Vik, S., Friedman, L., Kolter, R., Biofilms: The matrix revisited. Trends Microbiol. 2005, 13, 20-26.
42. Sutherland, I., Biofilm exopolysaccharides: A strong and sticky framework. Microbiology 2001, 147, 3-9.
43. Lasa, I., Towards the identification of the common features of bacterial biofilm development. Int. Microbiol. 2006, 9, 21-28.
44. Emsley, P., Charles, I. G., Fairweather, N. F., Isaacs, N. W., Structure of Bordetella pertussis virulence factor P.69 pertactin. Nature 1996, 381, 90-92.
45. Stockbauer, K. E., Fuchslocher, B., Miller, J. F., Cotter, P. A., Identification and characterization of BipA, a Bordetella Bvg-intermediate phase protein. Mol. Microbiol. 2001, 39, 65-78.
46. Li, Z. M., Hannah, J. H., Stibitz, S., Nguyen, N. Y. et al., Cloning and sequencing of the structural gene for the porin protein of Bordetella pertussis. Mol. Microbiol. 1991, 5, 1649-1656.
47. Cucarella, C., Solano, C., Valle, J., Amorena, B. et al., Bap, a Staphylococcus aureus surface protein involved in biofilm formation. J. Bacteriol. 2001, 183, 2888-2896.
48. Van Houdt, R., Michiels, C. W., Role of bacterial cell surface structures in Escherichia coli biofilm formation. Res. Microbiol. 2005, 156, 626-633.
49. Jakob, K., Satorhelyi, P., Lange, C., Wendisch, V. F. et al., Gene expression analysis of Corynebacterium glutamicum subjected to long-term lactic acid adaptation. J. Bacteriol. 2007, 89, 5582-5590.
50. Cotter, P. A., Jones, A. M., Phosphorelay control of virulence gene expression in Bordetella. Trends Microbiol. 2003, 11, 367-373.
51. Schauder, S., Shokat, K., Surette, M. G., Bassler, B. L., The LuxS family of bacterial autoinducers: Biosynthesis of a novel quorum-sensing signal molecule. Mol. Microbiol. 2001, 41, 463-476.
52. Miller, M. B., Bassler, B. L., Quorum sensing in bacteria. Annu. Rev. Microbiol. 2001, 55, 165-199.
53. Graeff-Wohlleben, H., Deppisch, H., Gross, R., Global regulatory mechanisms affect virulence gene expression in Bordetella pertussis. Mol. Gen. Genet. 1995, 247, 86-94.
54. Martinez de Tejada, G., Miller, J. F., Cotter, P. A., Comparative analysis of the virulence control systems of Bordetella pertussis and Bordetella bronchiseptica. Mol. Microbiol. 1996, 22, 895-908.