메뉴 건너뛰기




Volumn 276, Issue 1, 2009, Pages 132-143

The role of evolutionarily conserved hydrophobic contacts in the quaternary structure stability of Escherichia coli serine hydroxymethyltransferase

Author keywords

Conserved hydrophobic contacts; Fold type I enzymes; Pyridoxal phosphate; Quaternary structure; Serine hydroxymethyltransferase

Indexed keywords

GLYCINE HYDROXYMETHYLTRANSFERASE; PYRIDOXAL 5 PHOSPHATE;

EID: 57649153157     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/j.1742-4658.2008.06761.x     Document Type: Article
Times cited : (13)

References (29)
  • 1
    • 0033649909 scopus 로고    scopus 로고
    • The molecular evolution of pyridoxal-5′-phosphate-dependent enzymes
    • Mehta PK Christen P (2000) The molecular evolution of pyridoxal-5′-phosphate-dependent enzymes. Adv Enzymol Relat Areas Mol Biol 74, 129 184.
    • (2000) Adv Enzymol Relat Areas Mol Biol , vol.74 , pp. 129-184
    • Mehta, P.K.1    Christen, P.2
  • 2
    • 3943113663 scopus 로고    scopus 로고
    • Pyridoxal phosphate enzymes: Mechanistic, structural, and evolutionary considerations
    • Eliot AC Kirsch JF (2004) Pyridoxal phosphate enzymes: mechanistic, structural, and evolutionary considerations. Annu Rev Biochem 73, 383 415.
    • (2004) Annu Rev Biochem , vol.73 , pp. 383-415
    • Eliot, A.C.1    Kirsch, J.F.2
  • 3
    • 0028914569 scopus 로고
    • Pyridoxal phosphate-dependent enzymes
    • John RA (1995) Pyridoxal phosphate-dependent enzymes. Biochim Biophys Acta 1248, 81 96.
    • (1995) Biochim Biophys Acta , vol.1248 , pp. 81-96
    • John, R.A.1
  • 4
    • 0029046782 scopus 로고
    • Modeling of the spatial structure of eukaryotic ornithine decarboxylases
    • Grishin NV, Phillips MA Goldsmith EJ (1995) Modeling of the spatial structure of eukaryotic ornithine decarboxylases. Protein Sci 4, 1291 1304.
    • (1995) Protein Sci , vol.4 , pp. 1291-1304
    • Grishin, N.V.1    Phillips, M.A.2    Goldsmith, E.J.3
  • 5
    • 0032444219 scopus 로고    scopus 로고
    • Structure, evolution and action of vitamin B6-dependent enzymes
    • Jansonius JN (1998) Structure, evolution and action of vitamin B6-dependent enzymes. Curr Opin Struct Biol 8, 759 769.
    • (1998) Curr Opin Struct Biol , vol.8 , pp. 759-769
    • Jansonius, J.N.1
  • 6
    • 0343851637 scopus 로고    scopus 로고
    • The manifold of vitamin B6 dependent enzymes
    • Schneider G, Kack H Lindqvist Y (2000) The manifold of vitamin B6 dependent enzymes. Structure 8, R1 R6.
    • (2000) Structure , vol.8
    • Schneider, G.1    Kack, H.2    Lindqvist, Y.3
  • 7
    • 0242538842 scopus 로고    scopus 로고
    • Crystal structure of diaminopelargonic acid synthase: Evolutionary relationships between pyridoxal-5′-phosphate-dependent enzymes
    • Kack H, Sandmark J, Gibson K, Schneider G Lindqvist Y (1999) Crystal structure of diaminopelargonic acid synthase: evolutionary relationships between pyridoxal-5′-phosphate-dependent enzymes. J Mol Biol 291, 857 876.
    • (1999) J Mol Biol , vol.291 , pp. 857-876
    • Kack, H.1    Sandmark, J.2    Gibson, K.3    Schneider, G.4    Lindqvist, Y.5
  • 8
    • 7244238406 scopus 로고    scopus 로고
    • Evolutionarily conserved regions and hydrophobic contacts at the superfamily level: The case of the fold-type I, pyridoxal-5′-phosphate- dependent enzymes
    • Paiardini A, Bossa F Pascarella S (2004) Evolutionarily conserved regions and hydrophobic contacts at the superfamily level: the case of the fold-type I, pyridoxal-5′-phosphate-dependent enzymes. Protein Sci 13, 2992 3005.
    • (2004) Protein Sci , vol.13 , pp. 2992-3005
    • Paiardini, A.1    Bossa, F.2    Pascarella, S.3
  • 9
    • 0021881054 scopus 로고
    • Serine hydroxymethyltransferase from Escherichia coli: Purification and properties
    • Schirch V, Hopkins S, Villar E Angelaccio S (1985) Serine hydroxymethyltransferase from Escherichia coli: purification and properties. J Bacteriol 163, 1 7.
    • (1985) J Bacteriol , vol.163 , pp. 1-7
    • Schirch, V.1    Hopkins, S.2    Villar, E.3    Angelaccio, S.4
  • 10
    • 0029095080 scopus 로고
    • The affinity of pyridoxal 5′-phosphate for folding intermediates of Escherichia coli serine hydroxymethyltransferase
    • Cai K, Schirch D Schirch V (1995) The affinity of pyridoxal 5′-phosphate for folding intermediates of Escherichia coli serine hydroxymethyltransferase. J Biol Chem 270, 19294 19299.
    • (1995) J Biol Chem , vol.270 , pp. 19294-19299
    • Cai, K.1    Schirch, D.2    Schirch, V.3
  • 11
    • 0001059643 scopus 로고    scopus 로고
    • Mechanism of folate-requiring enzymes in one-carbon metabolism
    • In. Sinnott, M., eds), pp. Academic Press
    • Schirch V (1998) Mechanism of folate-requiring enzymes in one-carbon metabolism. In Comprehensive Biological Catalysis: A Mechanistic Reference (Sinnott M, eds), pp. 211 252. Academic Press
    • (1998) Comprehensive Biological Catalysis: A Mechanistic Reference , pp. 211-252
    • Schirch, V.1
  • 12
    • 0017625124 scopus 로고
    • Studies of the reactions of lamb liver serine hydroxymethylase with l-phenylalanine: Kinetic isotope effects upon quinonoid intermediate formation
    • Ulevitch RJ Kallen RG (1977) Studies of the reactions of lamb liver serine hydroxymethylase with l-phenylalanine: kinetic isotope effects upon quinonoid intermediate formation. Biochemistry 16, 5350 5354.
    • (1977) Biochemistry , vol.16 , pp. 5350-5354
    • Ulevitch, R.J.1    Kallen, R.G.2
  • 13
    • 0017760965 scopus 로고
    • Purification and characterization of pyridoxal 5′-phosphate dependent serine hydroxymethylase from lamb liver and its action upon beta-phenylserines
    • Ulevitch RJ Kallen RG (1977) Purification and characterization of pyridoxal 5′-phosphate dependent serine hydroxymethylase from lamb liver and its action upon beta-phenylserines. Biochemistry 16, 5342 5350.
    • (1977) Biochemistry , vol.16 , pp. 5342-5350
    • Ulevitch, R.J.1    Kallen, R.G.2
  • 14
    • 0034635346 scopus 로고    scopus 로고
    • Crystal structure at 2.4 a resolution of E. coli serine hydroxymethyltransferase in complex with glycine substrate and 5-formyl tetrahydrofolate
    • Scarsdale JN, Radaev S, Kazanina G, Schirch V Wright HT (2000) Crystal structure at 2.4 A resolution of E. coli serine hydroxymethyltransferase in complex with glycine substrate and 5-formyl tetrahydrofolate. J Mol Biol 296, 155 168.
    • (2000) J Mol Biol , vol.296 , pp. 155-168
    • Scarsdale, J.N.1    Radaev, S.2    Kazanina, G.3    Schirch, V.4    Wright, H.T.5
  • 15
    • 0037053283 scopus 로고    scopus 로고
    • Crystal structure of binary and ternary complexes of serine hydroxymethyltransferase from Bacillus stearothermophilus: Insights into the catalytic mechanism
    • Trivedi V, Gupta A, Jala VR, Saravanan P, Rao GS, Rao NA, Savithri HS Subramanya HS (2002) Crystal structure of binary and ternary complexes of serine hydroxymethyltransferase from Bacillus stearothermophilus: insights into the catalytic mechanism. J Biol Chem 277, 17161 17169.
    • (2002) J Biol Chem , vol.277 , pp. 17161-17169
    • Trivedi, V.1    Gupta, A.2    Jala, V.R.3    Saravanan, P.4    Rao, G.S.5    Rao, N.A.6    Savithri, H.S.7    Subramanya, H.S.8
  • 16
    • 2642571803 scopus 로고    scopus 로고
    • Serine hydroxymethyltransferase: Role of glu75 and evidence that serine is cleaved by a retroaldol mechanism
    • Szebenyi DM, Musayev FN, di Salvo ML, Safo MK Schirch V (2004) Serine hydroxymethyltransferase: role of glu75 and evidence that serine is cleaved by a retroaldol mechanism. Biochemistry 43, 6865 6876.
    • (2004) Biochemistry , vol.43 , pp. 6865-6876
    • Szebenyi, D.M.1    Musayev, F.N.2    Di Salvo, M.L.3    Safo, M.K.4    Schirch, V.5
  • 18
    • 0037236096 scopus 로고    scopus 로고
    • Structural plasticity of thermophilic serine hydroxymethyltransferases
    • Paiardini A, Gianese G, Bossa F Pascarella S (2003) Structural plasticity of thermophilic serine hydroxymethyltransferases. Proteins 50, 122 134.
    • (2003) Proteins , vol.50 , pp. 122-134
    • Paiardini, A.1    Gianese, G.2    Bossa, F.3    Pascarella, S.4
  • 19
    • 0034619570 scopus 로고    scopus 로고
    • Structure of a murine cytoplasmic serine hydroxymethyltransferase quinonoid ternary complex: Evidence for asymmetric obligate dimers
    • Szebenyi DM, Liu X, Kriksunov IA, Stover PJ Thiel DJ (2000) Structure of a murine cytoplasmic serine hydroxymethyltransferase quinonoid ternary complex: evidence for asymmetric obligate dimers. Biochemistry 39, 13313 13323.
    • (2000) Biochemistry , vol.39 , pp. 13313-13323
    • Szebenyi, D.M.1    Liu, X.2    Kriksunov, I.A.3    Stover, P.J.4    Thiel, D.J.5
  • 20
    • 0032530853 scopus 로고    scopus 로고
    • The crystal structure of human cytosolic serine hydroxymethyltransferase: A target for cancer chemotherapy
    • Renwick SB, Snell K Baumann U (1998) The crystal structure of human cytosolic serine hydroxymethyltransferase: a target for cancer chemotherapy. Structure 6, 1105 1116.
    • (1998) Structure , vol.6 , pp. 1105-1116
    • Renwick, S.B.1    Snell, K.2    Baumann, U.3
  • 21
    • 0033614832 scopus 로고    scopus 로고
    • Crystal structure of rabbit cytosolic serine hydroxymethyltransferase at 2.8 a resolution: Mechanistic implications
    • Scarsdale JN, Kazanina G, Radaev S, Schirch V Wright HT (1999) Crystal structure of rabbit cytosolic serine hydroxymethyltransferase at 2.8 A resolution: mechanistic implications. Biochemistry 38, 8347 8358.
    • (1999) Biochemistry , vol.38 , pp. 8347-8358
    • Scarsdale, J.N.1    Kazanina, G.2    Radaev, S.3    Schirch, V.4    Wright, H.T.5
  • 22
    • 0041731698 scopus 로고    scopus 로고
    • Role of proline residues in the folding of serine hydroxymethyltransferase
    • Fu TF, Boja ES, Safo MK Schirch V (2003) Role of proline residues in the folding of serine hydroxymethyltransferase. J Biol Chem 278, 31088 31094.
    • (2003) J Biol Chem , vol.278 , pp. 31088-31094
    • Fu, T.F.1    Boja, E.S.2    Safo, M.K.3    Schirch, V.4
  • 23
    • 0035666383 scopus 로고    scopus 로고
    • L-Threonine aldolase, serine hydroxymethyltransferase and fungal alanine racemase. a subgroup of strictly related enzymes specialized for different functions
    • Contestabile R, Paiardini A, Pascarella S, di Salvo ML, D'Aguanno S Bossa F (2001) l-Threonine aldolase, serine hydroxymethyltransferase and fungal alanine racemase. A subgroup of strictly related enzymes specialized for different functions. Eur J Biochem 268, 6508 6525.
    • (2001) Eur J Biochem , vol.268 , pp. 6508-6525
    • Contestabile, R.1    Paiardini, A.2    Pascarella, S.3    Di Salvo, M.L.4    D'Aguanno, S.5    Bossa, F.6
  • 24
    • 0030019662 scopus 로고    scopus 로고
    • Structural studies on folding intermediates of serine hydroxymethyltransferase using single tryptophan mutants
    • Cai K Schirch V (1996) Structural studies on folding intermediates of serine hydroxymethyltransferase using single tryptophan mutants. J Biol Chem 271, 2987 2994.
    • (1996) J Biol Chem , vol.271 , pp. 2987-2994
    • Cai, K.1    Schirch, V.2
  • 25
    • 0029910143 scopus 로고    scopus 로고
    • Structural studies on folding intermediates of serine hydroxymethyltransferase using fluorescence resonance energy transfer
    • Cai K Schirch V (1996) Structural studies on folding intermediates of serine hydroxymethyltransferase using fluorescence resonance energy transfer. J Biol Chem 271, 27311 27320.
    • (1996) J Biol Chem , vol.271 , pp. 27311-27320
    • Cai, K.1    Schirch, V.2
  • 26
    • 0030151990 scopus 로고    scopus 로고
    • Site-directed mutagenesis techniques in the study of Escherichia coli serine hydroxymethyltransferase
    • Iurescia S, Condo I, Angelaccio S, Delle Fratte S Bossa F (1996) Site-directed mutagenesis techniques in the study of Escherichia coli serine hydroxymethyltransferase. Protein Expr Purif 7, 323 328.
    • (1996) Protein Expr Purif , vol.7 , pp. 323-328
    • Iurescia, S.1    Condo, I.2    Angelaccio, S.3    Delle Fratte, S.4    Bossa, F.5
  • 27
    • 0030791496 scopus 로고    scopus 로고
    • Purification of folate-dependent enzymes from rabbit liver
    • Schirch V (1997) Purification of folate-dependent enzymes from rabbit liver. Methods Enzymol 281, 146 161.
    • (1997) Methods Enzymol , vol.281 , pp. 146-161
    • Schirch, V.1
  • 28
    • 34250789658 scopus 로고    scopus 로고
    • The mechanism of addition of pyridoxal 5′-phosphate to Escherichia coli apo-serine hydroxymethyltransferase
    • Malerba F, Bellelli A, Giorgi A, Bossa F Contestabile R (2007) The mechanism of addition of pyridoxal 5′-phosphate to Escherichia coli apo-serine hydroxymethyltransferase. Biochem J 404, 477 485.
    • (2007) Biochem J , vol.404 , pp. 477-485
    • Malerba, F.1    Bellelli, A.2    Giorgi, A.3    Bossa, F.4    Contestabile, R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.