Phylogeography of the endangered species, Sinogastromyzon puliensis (Cypriniformes: Balitoridae), in southwestern Taiwan based on mtDNA

Zoological Studies

Volumn 47, Issue 4, 2008, Pages 383-392

  Liao, Te Yu ^a,b   Wang, Tzi Yuan ^b,c   Lin, Hung Du ^d   Shen, Shih Chieh ^e   Tzeng, Chyng Shyan ^b  

^a SWEDISH MUSEUM OF NATURAL HISTORY   (Sweden)

^b NATIONAL TSING HUA UNIVERSITY   (Taiwan)

^c GENOMICS RESEARCH CENTER   (Taiwan)

^d NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

^e NATIONAL TAIWAN UNIVERSITY   (Taiwan)

Author keywords

Dispersal; Founder effect; Glaciation; MtDNA D loop; Zoogeography

Indexed keywords

BALITORIDAE; CYPRINIFORMES; SINOGASTROMYZON PULIENSIS;

EID: 57649091843     PISSN: 10215506     EISSN: 1810522X     Source Type: Journal    
DOI: None     Document Type: Article

References (54)

1. Aurelle D, G Cattaneo-Berrebi, P Berrebi. 2002. Natural and artificial secondary contact in brown trout (Salmo trutta L.) in the French western Pyrenees assessed by allozymes and microsatellites. Heredity 89: 171-183.
2. Bernatchez L, CC Wilson. 1998. Comparative phylogeography of Nearctic and Palearctic fishes. Mol. Ecol. 7: 431-452.
3. Boileau MG, PDN Hebert, SS Schwartz. 1992. Non-equilibrium gene frequency divergence: persistent founder effects in natural populations. J. Evol. Biol. 5: 25-39.
4. Brown GG, G Gadaleta, G Pepe, C Saccone, E Sbisa. 1986. Structural conservation and variation in the D-loopcontaining region of vertebrate mitochondrial DNA. J. Mol. Biol. 192: 503-511.
5. Chen YY. 1978. Systematic studies on the fishes of the family Homalopteridae of China I. Classification of the fishes of the subfamily Homalopterinae. Acta Hydrobiol. Sin. 6: 331-348. (in Chinese with English abstract)
6. Chiang TY, BA Schaal. 1999. Phylogeography of North American population of the moss species Hylocomium splendens based on the nucleotide sequence of internal transcribed spacer 2 of nuclear ribosomal DNA. Mol. Ecol. 8: 1037-1042.
7. Crandall KA, AR Templeton. 1993. Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics 134: 959-969.
8. Excoffier L, PE Smouse. 1994. Using allele frequencies and geographic subdivision to reconstruct gene tree within a species: molecular variance parsimony. Genetics 136: 343-359.
9. Excoffier P, PE Smouse, JM Quattro. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
10. Faber JE, CA Stepien. 1997. The utility of mitochondrial DNA control region sequences for analyzing phylogenetic relationships among populations, species and genera of the Percidae. In TD Kocher, CA Stepien, eds. Molecular systematics of fishes. San Diego, CA: Academic Press, pp. 129-144.
11. Felsenstein J. 1985. Confidence limits on phylogenies: an approach using bootstrap. Evolution 39: 783-791.
12. Felsenstein J. 2001. PHYLIP v3.6. Seattle, WA: Department of Genetics, Univ. of Washington.
13. Hillis DM, C Moritz, BK Mable. 1996. Molecular systematics. Sunderland, MA: Sinauer Associates.
14. Hudson RR, M Slatkin, WP Maddison. 1992. Estimation of levels of gene flow from DNA sequence data. Genetics 132: 583-589.
15. Innis MA, DH Gelfand, JJ Sninsky, TJ White. 1989. PCR protocols: a guide to methods and application. San Diego, CA: Academic Press.
16. Jukes TH, CR Cantor. 1969. Evolution of protein molecules. In HN Munro, ed. Mammalian protein metabolism. New York: Academic Press, pp. 21-123.
17. Kocher TD, WK Thomas, A Meyer, SV Edwards, S Paeaebo, EX Villablanca, AC Wilson. 1989. Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc. Natl. Acad. Sci. USA 86: 6196-6200.
18. Kottelat M. 2001a. Fishes of Laos. Colombo, Sri Lanka: WHT Publications.
19. Kottelat M. 2001b. Freshwater fishes of northern Vietnam. Washington, DC: World Bank.
20. Kullander SO. 1999. Fish species - how and why. Rev. Fish Biol. Fish. 9: 325-352.
21. Kumar S, K Tamura, M Nei. 2004. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5: 150-163.
22. Lee TW. 2000. Distribution and relative abundance of Sinogastromyzon puliensis in Taiwan. Endem. Species Res. 1: 13-20. (in Chinese with English abstract)
23. Lee WJ, J Conroy, WH Howell, TD Kocher. 1995. Structure and evolution of teleost mitochondrial control regions. J. Mol. Evol. 41: 54-66.
24. Li WH. 1997. Molecular evolution. Sunderland, MA: Sinauer Associates.
25. Liao TY, TY Wang, CS Tzeng. 2003. Homalopteridae fishes of Taiwan. Nat. Conserv. Q. Issue 44: 65-71. (in Chinese)
26. Lin CC. 1966. An outline of Taiwan's quaternary geohistory with a special discussion of the relation between naturalhistory and culture history in Taiwan. Bull. Dept. Anthrop. 28: 7-44. (in Chinese)
27. Lin HD, S Huang. 1999. The population genetic structure of Varicorhinus baratulus (Pellegrin) in Taiwan. Biol. Bull. Natl. Taiwan Normal Univ. 34: 81-93.
28. Manly BFJ. 1986. Randomization and regression methods for testing for associations with geographical, environmental and biological distances between populations. Res. Populat. Ecol. 28: 201-218.
29. Nei M, F Tajima. 1983. Maximum likelihood estimation of the number of nucleotide substitutions from restriction site data. Genetics 105: 207-217.
30. Oshima M. 1923. Studies on the distribution of freshwater fishes of Taiwan and discuss the geographic relationships of the Taiwan island and adjacent area. Zool. Mag. 35: 1-49. (in Japanese)
31. Perdices A, I Doadrio. 2001. The molecular systematics and biogeography of the European cobitids based on mitochondrial DNA sequences. Mol. Phylogenet. Evol. 19: 468-478.
32. Posada D, KA Crandall, AR Templeton. 2000. GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Mol. Ecol. 9: 487-488.
33. Rozas J, R Rozas. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175.
34. Saitou N, M Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
35. Sanderson MJ. 2002. r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics 19: 301-302.
36. Schneider S, D Roessli, L Excoffier. 2000. Arlequin: a software for population genetics data analysis. User manual vers. 2.000. Geneva, Switzerland: Genetics and Biometry Lab, Dept. of Anthropology, Univ. of Geneva
37. Shen SC, ed. 1993. Fishes of Taiwan. Taipei, Taiwan: National Taiwan Univ. (in Chinese)
38. Slatkin M. 1993. Isolation by distance in equilibrium and nonequilibrium populations. Evolution 47: 264-279.
39. Sturmbauer C, E Verheyen, L Ruber, A Meyer. 1997. Phylogeographic patterns in populations of cichlid fishes from rocky habitats in Lake Tanganyika. In TD Kocher, CA Stepien, eds. Molecular systematics of fishes. San Diego, CA: Academic Press, pp. 97-111.
40. Su JS. 2004. The illustrated handbook of animals protected by Wildlife Conservation Act of Taiwan. Nantou, Taiwan: Endemic Species Research Institute. (in Chinese)
41. Swofford DL. 2002. PAUP*: Phylogenetic Analysis Using Parsimony (* and other methods), vers. 4.0b10. Sunderland, MA: Sinauer Associates.
42. Tamura K, M Nei. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzee. Mol. Biol. Evol. 10: 512-526.
43. Taylor MI, E Verheyen. 2001. Characterization of microsatellite loci in the stone loach, Barbatula barbatula L. Mol. Ecol. Notes 1: 96-97.
44. Templeton AR. 2004. Statistical phylogeography: methods of evaluating and minimizing inference errors. Mol. Ecol. 13: 789-809.
45. Tzeng CS. 1986. Distribution of the freshwater fish of Taiwan. J. Taiwan Mus. 39: 127-146.
46. Tzeng CS, CF Hui, SC Shen, PC Huang. 1992. The complete nucleotide sequence of the Crossostoma lacustre mitochondrial genome: conservation and variation among vertebrates. Nucleic Acids Res. 20: 4853-4858.
47. Wang HY, MP Tsai, MJ Yu, SC Lee. 1999. Influence of glaciation on divergence patterns of the endemic minnow, Zacco pachycephalus, in Taiwan. Mol. Ecol. 8: 1879-1888.
48. Wang JP, KC Hsu, TY Chiang. 2000. Mitochondrial DNA phylogeography of Acrossocheilus paradoxus (Cyprinidae) in Taiwan. Mol. Ecol. 9: 1483-1494.
49. Wang JP, HD Lin, S Huang, CH Pan, XL Chen, TY Chiang. 2004. Phylogeography of Varicorhinus barbatulus (Cyprinidae) in Taiwan based on nucleotide variation of mtDNA and allozymes. Mol. Phylogenet. Evol. 31: 1143-1156.
50. Wang TY. 2004. Taxonomy, evolution and phylogeography of Balitoridae in East Asia. PhD dissertation. Hsinchu, Taiwan: Dept. of Life Science, National Tsing-Hua Univ. (in Chinese with English abstract)
51. Wang TY, TY Liao, CS Tzeng. 2007a. Phylogeography of the endemic hillstream loaches, Hemimyzon formosanus and H. taitungensis (Cypriniformes: Balitoridae). Zool. Stud. 46: 547-560.
52. Wang TY, CS Tzeng, HY Teng, T Chang. 2007b. Phylogeography and identification of a 187-bp-long duplication within the mitochondrial control region of Formosania lacustre (Teleostei: Balitoridae). Zool. Stud. 46: 569-582.
53. Ward RD, M Woodwark, DOF Skibinski. 1994. A comparison of genetic diversity level in marine, freshwater and anadromous fishes. J. Fish Biol. 44: 213-232.
54. Watanabe M. 1983. A review of homalopterid fishes of Taiwan, with a description of a new species. Bull. Biogeogr. Soc. Jpn. 38: 105-123.