Tissue- and cell-specific alternative splicing of NFIC

Cells Tissues Organs

Volumn 189, Issue 1-4, 2008, Pages 105-110

  Lamani, Ejvis ^a   Wu, Yixin ^a   Dong, Juan ^a   Litaker, Mark Stephen ^a   Acevedo, Ana Carolina ^b   MacDougall, Mary ^a  

^a UNIVERSITY OF ALABAMA AT BIRMINGHAM   (United States)

^b UNIVERSITY OF BRASILIA   (Brazil)

Author keywords

Alternative splicing; Dental cells; Gene structure; Nuclear factor I C; Root formation

Indexed keywords

NUCLEAR FACTOR I; NUCLEAR FACTOR I C; UNCLASSIFIED DRUG;

ADOLESCENT; ADULT; ALTERNATIVE RNA SPLICING; BIOINFORMATICS; CELL SPECIFICITY; CHROMOSOMAL LOCALIZATION; CONFERENCE PAPER; CONTROLLED STUDY; EXON; GENE EXPRESSION; GENE STRUCTURE; GENETIC TRANSCRIPTION; HUMAN; HUMAN CELL; HUMAN TISSUE; PHENOTYPE; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; TISSUE SPECIFICITY; TOOTH PULP;

ADOLESCENT; ALTERNATIVE SPLICING; ANIMALS; EXONS; GENE EXPRESSION PROFILING; HELA CELLS; HUMANS; MICE; NFI TRANSCRIPTION FACTORS; ORGAN SPECIFICITY; PROTEIN ISOFORMS; RNA, MESSENGER;

MUS;

EID: 57449114183     PISSN: 14226405     EISSN: None     Source Type: Journal    
DOI: 10.1159/000152912     Document Type: Conference Paper

References (13)

1. Chaudhry, A.Z., G.E. Lyons, R.M. Gronostajski (1997) Expression patterns of the four nuclear factor I genes during mouse embryogenesis indicate a potential role in development. Dev Dyn 208: 313-325.
2. das Neves, L., C. Duchala, F. Godinho, M. Haxhiu, C. Colmenares, W. Macklin, C. Campbell, K. Butz, R. Gronostajski (1999) Disruption of the murine nuclear factor I-A gene (Nfia) results in perinatal lethality, hydrocephalus and agenesis of the corpus callosum. Proc Natl Acad Sci USA 96: 11946-11951.
3. Gounari, F., R. De Francesco, J. Schmitt, P. van der Vliet, R. Cortese, H. Stunnenberg (1990) Amino-terminal domain of NF1 binds to DNA as a dimer and activates adenovirus DNA replication. EMBO J 9: 559-566.
4. Grunder A, T.T. Ebel, M. Mallo, G. Schwarzkopf, T. Shimizu, A.E. Sippel, H. Schrewe, (2002) Nuclear factor I-B (Nfib) deficient mice have severe lung hypoplasia. Mech Dev 112: 69-77.
5. Hubbard, T.J.P., B.L. Aken, K. Beal, B. Ballester, M. Caccamo, Y. Chen, L. Clarke, G. Coates, F. Cunningham, T. Cutts, T. Down, S.C. Dyer, S. Fitzgerald, J. Fernandez-Banet, S. Graf, S. Haider, M. Hammond, J. Herrero, R. Holland, K. Howe, N. Johnson, A. Kahari, D. Keefe, F. Kokocinski, E. Kulesha, D. Lawson, I. Longden, C. Melsopp, K. Megy, P. Meid, B. Overduin, A. Parker, A. Prlic, S. Rice, D. Rios, M. Schuster, I. Sealy, J. Severin, G. Slater, D. Smedley, G. Spudich, S. Trevanion, A. Vilella, J. Voge, S. White, M. Wood, T. Cox, V. Curwen, R. Durbin, X.M. Fernandez-Suarez, P. Flicek, A. Kasprzyk, G. Proctor, S. Searle, J. Smith, A. Ureta-Vidal, E. Birney (2007) Ensembl 2007. Nucleic Acids Res 35: D610-D617.
6. Kruse, U., A.E. Sippel (1994) The genes for transcription nuclear factor I give rise to corresponding spliced variants between vertebrate species. J Mol Biol 238: 860-865.
7. MacDougall, M. (1996) Odontoblast cytodifferentiation in monolayer cell cultures: establishment of immortalized odontoblast cell lines; in Shimono, M., T. Maeda, H. Suda, K. Takahashi (eds): Dentin/Pulp Complex Proceedings of the International Conference on Dentin/Pulp Complex 1995 and the Inter national Meeting on Clinical Topics of Dentin/Pulp Complex. Tokyo, Quintessence Publishing Co., pp 116-123.
8. Mermod, N., E.A. O'Neill, T.J. Kelly, R. Tjian (1989) The proline-rich transcriptional activator of CTF/NF-I is distinct from the replication and DNA binding domain. Cell 58: 741-753.
9. Safran, M., V. Chalifa-Caspi, O. Shmueli, T. Olender, M. Lapidot, N. Rosen, M. Shmoish, Y. Peter, G. Glusman, E. Feldmesser, A. Adato, I. Peter, M. Khen, T. Atarot, Y. Groner, D. Lancet (2003) Human Gene-Centric Databases at the Weizmann Institute of Science: GeneCards, UDB, CroW 21 and HORDE. Nucleic Acids Res 31: 142-146.
10. Santoro, C., N. Mermod, P.C. Andrews, R. Tjian (1988) A family of human CCAAT-box-binding proteins active in transcription and DNA replication: cloning and expression of multiple cDNAs. Nature 334: 218-224.
11. Shmueli, O., D. Horn-Saban, V. Chalifa-Caspi, M. Shmoish, R. Ophir, H. Benjamin-Rodrig, M. Safran, E. Domany, D. Lancet (2003) GeneNote: whole genome expression profiles in normal human tissues. C R Biol 326: 1067-1072.
12. Steele-Perkins, G., K.G.I. Butz, G.E. Lyons, M. Zeichner-David, H.J. Kim, M.I. Cho, R.M. Gronostajski (2003) Essential role for NFI-C/CTF transcription-replication factor in tooth development. Mol Cell Biol 23: 1075-1084.
13. Yanai, I., H. Benjamin, M. Shmoish, V. Chalifa-Caspi, M. Shklar, R. Ophir, A. Bar-Even, S. Horn-Saban, M. Safran, E. Domany, D. Lancet, O. Shmueli (2005) Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification. Bioinformatics 21: 650-659.