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Volumn 17, Issue 12, 2008, Pages 3499-3508

Whole-genome amplification enables accurate genotyping for microarray-based high-density single nucleotide polymorphism array

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMOSOME NUMBER; CONTROLLED STUDY; GENE AMPLIFICATION; GENOTYPE; HUMAN; MICROARRAY ANALYSIS; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; TELOMERE;

EID: 57449106680     PISSN: 10559965     EISSN: None     Source Type: Journal    
DOI: 10.1158/1055-9965.EPI-08-0482     Document Type: Article
Times cited : (23)

References (37)
  • 1
    • 0038781878 scopus 로고    scopus 로고
    • Unbiased whole-genome amplification directlyf rom clinical samples
    • Hosono S, Faruqi AF, Dean FB, et al. Unbiased whole-genome amplification directlyf rom clinical samples. Genome Res 2003;13:954-64.
    • (2003) Genome Res , vol.13 , pp. 954-964
    • Hosono, S.1    Faruqi, A.F.2    Dean, F.B.3
  • 3
    • 57449092053 scopus 로고    scopus 로고
    • Packer RJ, Bolton BJ. Immortalization of B-lymphocyte by Epstein-Barr Virus In: Celis JE, editor. Cell biology: a laboratory manual. San Diego, USA: Academic Press; 1998.p.178-85.
    • Packer RJ, Bolton BJ. Immortalization of B-lymphocyte by Epstein-Barr Virus In: Celis JE, editor. Cell biology: a laboratory manual. San Diego, USA: Academic Press; 1998.p.178-85.
  • 4
    • 0029966845 scopus 로고    scopus 로고
    • Whole genome amplification using a degenerate oligonucleotide primer allows hundreds of genotypes to be performed on less than one nanogram of genomic DNA
    • Cheung VG, Nelson SF. Whole genome amplification using a degenerate oligonucleotide primer allows hundreds of genotypes to be performed on less than one nanogram of genomic DNA. Proc Natl Acad Sci U S A 1996;93:14676-9.
    • (1996) Proc Natl Acad Sci U S A , vol.93 , pp. 14676-14679
    • Cheung, V.G.1    Nelson, S.F.2
  • 5
    • 30944435397 scopus 로고    scopus 로고
    • Array CGH using whole genome amplification of fresh-frozen and formalin-fixed, paraffin-embedded tumor DNA
    • Little SE, Vuononvirta R, Reis-Filho JS, et al. Array CGH using whole genome amplification of fresh-frozen and formalin-fixed, paraffin-embedded tumor DNA. Genomics 2006;87:298-306.
    • (2006) Genomics , vol.87 , pp. 298-306
    • Little, S.E.1    Vuononvirta, R.2    Reis-Filho, J.S.3
  • 6
    • 23844540368 scopus 로고    scopus 로고
    • Estimation of the rate of SNP genotyping errors from DNA extracted from different tissues
    • Montgomery GW, Campbell MJ, Dickson P, et al. Estimation of the rate of SNP genotyping errors from DNA extracted from different tissues. Twin Res Hum Genet 2005;8:346-52.
    • (2005) Twin Res Hum Genet , vol.8 , pp. 346-352
    • Montgomery, G.W.1    Campbell, M.J.2    Dickson, P.3
  • 7
    • 19944432329 scopus 로고    scopus 로고
    • Investigating the utility of combining phi29 whole genome amplification and highly multiplexed single nucleotide polymorphism Bead Array genotyping
    • Pask R, Rance HE, Barratt BJ, et al. Investigating the utility of combining phi29 whole genome amplification and highly multiplexed single nucleotide polymorphism Bead Array genotyping. BMC Biotechnol 2004;4:15.
    • (2004) BMC Biotechnol , vol.4 , pp. 15
    • Pask, R.1    Rance, H.E.2    Barratt, B.J.3
  • 8
    • 7044272596 scopus 로고    scopus 로고
    • The Breast Cancer Family Registry: An infrastructure for cooperative multinational, interdisciplinary and translational studies of the genetic epidemiology of breast cancer
    • John EM, Hopper JL, Beck JC, et al. The Breast Cancer Family Registry: an infrastructure for cooperative multinational, interdisciplinary and translational studies of the genetic epidemiology of breast cancer. Breast Cancer Res 2004;6:R375-89.
    • (2004) Breast Cancer Res , vol.6
    • John, E.M.1    Hopper, J.L.2    Beck, J.C.3
  • 10
    • 57449095605 scopus 로고    scopus 로고
    • QIAGEN, Available from
    • QIAGEN. REPLI-g Mini/Midi Handbook.2005. Available from: http://www1.qiagen.com/ts/msds.asp.
    • (2005) REPLI-g Mini/Midi Handbook
  • 11
    • 57449113168 scopus 로고    scopus 로고
    • Affymetrix. GeneChip Mendel Array Protocol Early Access Version 2.0 2005. Available from
    • Affymetrix. GeneChip Mendel Array Protocol Early Access Version 2.0 2005. Available from: http://www.affymetrix.com.
  • 12
    • 0024610919 scopus 로고
    • A tutorial on hidden Markov models and selected applications in speech recognition
    • Rabiner LR. A tutorial on hidden Markov models and selected applications in speech recognition. Proceedings of the IEEE 1989;77:257-85.
    • (1989) Proceedings of the IEEE , vol.77 , pp. 257-285
    • Rabiner, L.R.1
  • 13
    • 57449105200 scopus 로고    scopus 로고
    • UCSC genome browser NCBI build 35, Aug 26, Available from
    • UCSC genome browser NCBI build 35, Aug 26, 2004. Available from: http://genome.ucsc.edu.
    • (2004)
  • 14
    • 33846531959 scopus 로고    scopus 로고
    • Genome-wide SNP assay reveals structural genomic variation, extended homozygosity and cell-line induced alterations in normal individuals
    • Simon-Sanchez J, Scholz S, Fung HC, et al. Genome-wide SNP assay reveals structural genomic variation, extended homozygosity and cell-line induced alterations in normal individuals. Hum Mol Genet 2007;16:1-14.
    • (2007) Hum Mol Genet , vol.16 , pp. 1-14
    • Simon-Sanchez, J.1    Scholz, S.2    Fung, H.C.3
  • 15
    • 33846006596 scopus 로고    scopus 로고
    • A comprehensive analysis of common copy-number variations in the human genome
    • Wong KK, deLeeuw RJ, Dosanjh NS, et al. A comprehensive analysis of common copy-number variations in the human genome. Am J Hum Genet 2007;80:91-104.
    • (2007) Am J Hum Genet , vol.80 , pp. 91-104
    • Wong, K.K.1    deLeeuw, R.J.2    Dosanjh, N.S.3
  • 16
    • 38449122025 scopus 로고    scopus 로고
    • Copy-number variation in control population cohorts
    • Pinto D, Marshall C, Feuk L, Scherer SW. Copy-number variation in control population cohorts. Hum Mol Genet 2007;16 Spec No. 2: R168-73.
    • (2007) Hum Mol Genet , vol.16 , Issue.SPEC 2
    • Pinto, D.1    Marshall, C.2    Feuk, L.3    Scherer, S.W.4
  • 17
    • 35748971743 scopus 로고    scopus 로고
    • Array CGH analysis of copynum ber variation identifies 1284 new genes variant in healthy white males: Implications for association studies of complex diseases
    • de Smith AJ, Tsalenko A, Sampas N, et al. Array CGH analysis of copynum ber variation identifies 1284 new genes variant in healthy white males: implications for association studies of complex diseases. Hum Mol Genet 2007;16:2783-94.
    • (2007) Hum Mol Genet , vol.16 , pp. 2783-2794
    • de Smith, A.J.1    Tsalenko, A.2    Sampas, N.3
  • 18
    • 4444291843 scopus 로고    scopus 로고
    • Detection of large-scale variation in the human genome
    • Iafrate AJ, Feuk L, Rivera MN, et al. Detection of large-scale variation in the human genome. Nat Genet 2004;36:949-51.
    • (2004) Nat Genet , vol.36 , pp. 949-951
    • Iafrate, A.J.1    Feuk, L.2    Rivera, M.N.3
  • 19
    • 35448992970 scopus 로고    scopus 로고
    • Germ-line DNA copy number variation frequencies in a large North American population
    • Zogopoulos G, Ha KC, Naqib F, et al. Germ-line DNA copy number variation frequencies in a large North American population. Hum Genet 2007;122:345-53.
    • (2007) Hum Genet , vol.122 , pp. 345-353
    • Zogopoulos, G.1    Ha, K.C.2    Naqib, F.3
  • 20
    • 33751329250 scopus 로고    scopus 로고
    • Global variation in copy number in the human genome
    • Redon R, Ishikawa S, Fitch KR, et al. Global variation in copy number in the human genome. Nature 2006;444:444-54.
    • (2006) Nature , vol.444 , pp. 444-454
    • Redon, R.1    Ishikawa, S.2    Fitch, K.R.3
  • 22
    • 18344396798 scopus 로고    scopus 로고
    • Comprehensive human genome amplification using multiple displacement amplification
    • Dean FB, Hosono S, Fang L, et al. Comprehensive human genome amplification using multiple displacement amplification. Proc Natl Acad Sci U S A 2002;99:5261-6.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 5261-5266
    • Dean, F.B.1    Hosono, S.2    Fang, L.3
  • 23
    • 0642273268 scopus 로고    scopus 로고
    • Quantitative evaluation by minisequencing and microarrays reveals accurate multiplexed SNP genotyping of whole genome amplified DNA
    • Lovmar L, Fredriksson M, Liljedahl U, Sigurdsson S, Syvanen AC. Quantitative evaluation by minisequencing and microarrays reveals accurate multiplexed SNP genotyping of whole genome amplified DNA. Nucleic Acids Res 2003;31:e129.
    • (2003) Nucleic Acids Res , vol.31
    • Lovmar, L.1    Fredriksson, M.2    Liljedahl, U.3    Sigurdsson, S.4    Syvanen, A.C.5
  • 24
    • 33748591589 scopus 로고    scopus 로고
    • Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing
    • Pinard R, de Winter A, Sarkis GJ, et al. Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing. BMC Genomics 2006;7:216.
    • (2006) BMC Genomics , vol.7 , pp. 216
    • Pinard, R.1    de Winter, A.2    Sarkis, G.J.3
  • 25
    • 23944499790 scopus 로고    scopus 로고
    • A high-density screen for linkage in multiple sclerosis
    • Sawcer S, Ban M, Maranian M, et al. A high-density screen for linkage in multiple sclerosis. Am J Hum Genet 2005;77:454-67.
    • (2005) Am J Hum Genet , vol.77 , pp. 454-467
    • Sawcer, S.1    Ban, M.2    Maranian, M.3
  • 26
    • 0033557235 scopus 로고    scopus 로고
    • Detailed chromosomal and molecular genetic analysis of single cells by whole genome amplification and comparative genomic hybridisation
    • Wells D, Sherlock JK, Handyside AH, Delhanty JD. Detailed chromosomal and molecular genetic analysis of single cells by whole genome amplification and comparative genomic hybridisation. Nucleic Acids Res 1999;27:1214-8.
    • (1999) Nucleic Acids Res , vol.27 , pp. 1214-1218
    • Wells, D.1    Sherlock, J.K.2    Handyside, A.H.3    Delhanty, J.D.4
  • 27
    • 0037315428 scopus 로고    scopus 로고
    • Whole genome analysis of genetic alterations in small DNA samples using hyperbranched strand displacement amplification and array-CGH
    • Lage JM, Leamon JH, Pejovic T, et al. Whole genome analysis of genetic alterations in small DNA samples using hyperbranched strand displacement amplification and array-CGH. Genome Res 2003;13:294-307.
    • (2003) Genome Res , vol.13 , pp. 294-307
    • Lage, J.M.1    Leamon, J.H.2    Pejovic, T.3
  • 29
    • 0026736251 scopus 로고
    • Degenerate oligonucleotide-primed PCR: General amplification of target DNA bya single degenerate primer
    • Telenius H, Carter NP, Bebb CE, Nordenskjold M, Ponder BA, Tunnacliffe A. Degenerate oligonucleotide-primed PCR: general amplification of target DNA bya single degenerate primer. Genomics 1992;13:718-25.
    • (1992) Genomics , vol.13 , pp. 718-725
    • Telenius, H.1    Carter, N.P.2    Bebb, C.E.3    Nordenskjold, M.4    Ponder, B.A.5    Tunnacliffe, A.6
  • 30
    • 26844442640 scopus 로고    scopus 로고
    • Effects of DNA mass on multiple displacement whole genome amplification and genotyping performance
    • Bergen AW, Qi Y, Haque KA, Welch RA, Chanock SJ. Effects of DNA mass on multiple displacement whole genome amplification and genotyping performance. BMC Biotechnol 2005;5:24.
    • (2005) BMC Biotechnol , vol.5 , pp. 24
    • Bergen, A.W.1    Qi, Y.2    Haque, K.A.3    Welch, R.A.4    Chanock, S.J.5
  • 31
    • 33845752963 scopus 로고    scopus 로고
    • Evaluation of Phi29-based whole-genome amplification for microarray-based comparative genomic hybridisation
    • Arriola E, Lambros MB, Jones C, et al. Evaluation of Phi29-based whole-genome amplification for microarray-based comparative genomic hybridisation. Lab Invest 2007;87:75-83.
    • (2007) Lab Invest , vol.87 , pp. 75-83
    • Arriola, E.1    Lambros, M.B.2    Jones, C.3
  • 32
    • 2442646694 scopus 로고    scopus 로고
    • Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplification
    • DOI: 10.1093/nar/gnh069
    • Paez JG, Lin M, Beroukhim R, et al. Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplification. Nucleic Acids Res 2004;32:e71. DOI: 10.1093/nar/gnh069.
    • (2004) Nucleic Acids Res , vol.32
    • Paez, J.G.1    Lin, M.2    Beroukhim, R.3
  • 33
    • 33745686070 scopus 로고    scopus 로고
    • Multiple displacement amplification to create a long-lasting source of DNA for genetic studies
    • Lovmar L, Syvanen AC. Multiple displacement amplification to create a long-lasting source of DNA for genetic studies. Hum Mutat 2006;27:603-14.
    • (2006) Hum Mutat , vol.27 , pp. 603-614
    • Lovmar, L.1    Syvanen, A.C.2
  • 34
    • 0242475336 scopus 로고    scopus 로고
    • Whole genome amplification: Abundant supplies of DNA from precious samples or clinical specimens
    • Lasken RS, Egholm M. Whole genome amplification: abundant supplies of DNA from precious samples or clinical specimens. Trends Biotechnol 2003;21:531-5.
    • (2003) Trends Biotechnol , vol.21 , pp. 531-535
    • Lasken, R.S.1    Egholm, M.2
  • 35
    • 0041360026 scopus 로고    scopus 로고
    • Multiple displacement amplification prior to single nucleotide polymorphism genotyping in epidemiologic studies
    • Tranah GJ, Lescault PJ, Hunter DJ, De Vivo I. Multiple displacement amplification prior to single nucleotide polymorphism genotyping in epidemiologic studies. Biotechnol Lett 2003;25:1031-6.
    • (2003) Biotechnol Lett , vol.25 , pp. 1031-1036
    • Tranah, G.J.1    Lescault, P.J.2    Hunter, D.J.3    De Vivo, I.4
  • 36
    • 2442707739 scopus 로고    scopus 로고
    • Two methods of whole-genome amplification enable accurate genotyping across a 2320-SNP linkage panel
    • Barker DL, Hansen MS, Faruqi AF, et al. Two methods of whole-genome amplification enable accurate genotyping across a 2320-SNP linkage panel. Genome Res 2004;14:901-7.
    • (2004) Genome Res , vol.14 , pp. 901-907
    • Barker, D.L.1    Hansen, M.S.2    Faruqi, A.F.3
  • 37
    • 57149097677 scopus 로고    scopus 로고
    • Successful amplification of degraded DNA for use with high-throughput SNP genotyping platforms
    • DOI 10.1002/humu.20782
    • Mead S, Poulter M, Beck J, et al. Successful amplification of degraded DNA for use with high-throughput SNP genotyping platforms. Hum Mutat 2008. DOI 10.1002/humu.20782.
    • (2008) Hum Mutat
    • Mead, S.1    Poulter, M.2    Beck, J.3


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