Hole polarons in poly(G)-poly(C) and poly(A)-poly(T) DNA molecules

Science in China, Series B: Chemistry

Volumn 51, Issue 12, 2008, Pages 1182-1186

  Cui, Peng ^a   Wu, Jian ^a   Zhang, Guiqing ^a   Liu, Chengbu ^a  

^a SHANDONG UNIVERSITY   (China)

Author keywords

Charge migration; DNA; Polaron; SSH model

Indexed keywords

DNA; ELECTRIC FIELD EFFECTS; ELECTRIC FIELDS; GENES; NUCLEIC ACIDS; OLIGOMERS; PHONONS; POLARONS;

AB INITIO CALCULATIONS; BASE PAIRS; BINDING MODELS; CHARGE MIGRATION; CHARGE MIGRATIONS; DNA MOLECULES; DUPLEX DNAS; HOLE POLARONS; PHONON COUPLINGS; POLY(A); SSH MODEL; TRANSFER INTEGRALS;

ORGANIC ACIDS;

EID: 57349163154     PISSN: 10069291     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11426-008-0128-y     Document Type: Article

References (21)

1. C. J. Murphy M. R. Arkin Y. Jenkins N. D. Ghatlia S. H. Bossmann N. J. Turro J. K. Barton 1993 Long-range photoinduced electron-transfer through a DNA helix Science 262 1025 1029
2. D. B. Hall R. E. Holmlin J. K. Barton 1996 Oxidative DNA damage through long-range electron transfer Nature 382 731 735
3. B. Giese 2000 Long distance charge transport in DNA: The hopping mechanism Acc Chem Res 33 631 636
4. M. Bixon B. Giese S. Wessely T. Langenbacher M. E. Michel-Beyerle J. Jortner 1999 Long-range charge hopping in DNA PNAS 96 11713 11716
5. P. T. Henderson D. Jones G. Hampikian Y. Z. Kan G. B. Schuster 1999 Long-distance charge transport in duplex DNA: The phonon-assisted polaron-like hopping mechanism PNAS 96 8353 8358
6. G. B. Schuster 2000 Long-range charge transfer in DNA: Transient structural distortions control the distance dependence Acc Chem Res 33 253 260
7. T. Takada K. Kawai M. Fujitsuka T. Majima 2004 Direct observation of hole transfer through double-helical DNA over 100 A PNAS 101 14002 14006
8. T. Takada K. Kawai M. Fujitsuka T. Majima 2006 Rapid long-distance hole transfer through consecutive adenine sequence J Am Chem Soc 128 11012 11013
9. D. Porath A. Bezryadin S. de Vries C. Dekker 2000 Direct measurement of electrical transport through DNA molecules Nature 403 635 638
10. D. D. Eley D. I. Spivey 1962 Semiconductivity of organic substances. Part 9.-Nucleic acid in the dry state Trans Faraday Soc 58 411 415
11. E. M. Conwell S. V. Rakhmanova 2000 Polarons in DNA PNAS 97 4556 4560
12. S. S. Alexandre E. Artacho J. M. Soler H. Chacham 2003 Small polarons in dry DNA Phys Rev Lett 91 108105
13. S. V. Rakhmanova E. M. Conwell 2001 Polaron motion in DNA J Phys Chem B 105 2056 2061
14. B. Zheng J. Wu W. Q. Sun C. B. Liu 2006 Trapping and hopping of polaron in DNA periodic stack Chem Phys Lett 425 123 127
15. W. P. Su J. R. Schrieffer A. J. Heeger 1979 Solitons in polyacetylene Phys Rev Lett 42 1698
16. W. P. Su J. R. Schrieffer A. J. Heeger 1980 Soliton excitations in polyacetylene Phys Rev B 22 2099
17. A. A. Voityuk N. Rosch M. Bixon J. Jortner 2000 Electronic coupling for charge transfer and transport in DNA J Phys Chem B 104 9740 9745
18. A. A. Voityuk J. Jortner M. Bixon N. Rosch 2001 Electronic coupling between Watson-Crick pairs for hole transfer and transport in desoxyribonucleic acid J Chem Phys 114 5614 5620
19. Y. Ono A. Terai 1990 Motion of charged solition in polyacetylene due to electric field J Phys Soc Jpn 59 2893 2904
20. Frisch M J, Trucks G W, Schlegel H B, Scuseria G E, Robb M A, Cheeseman J R, Montgomery J A, Jr., Vreven T, Kudin K N, Burant J C, Millam J M, Iyengar S S, Tomasi J, Barone V, Mennucci B, Cossi M, Scalmani G, Rega N, Petersson G A, Nakatsuji H, Hada M, Ehara M, Toyota K, Fukuda R, Hasegawa J, Ishida M, Nakajima T, Honda Y, Kitao O, Nakai H, Klene M, Li X, Knox J E, Hratchian H P, Cross J B, Bakken V, Adamo C, Jaramillo J, Gomperts R, Stratmann R E, Yazyev O, Austin A J, Cammi R, Pomelli C, Ochterski J W, Ayala P Y, Morokuma K, Voth G A, Salvador P, Dannenberg J J, Zakrzewski V G, Dapprich S, Daniels A D, Strain M C, Farkas O, Malick D K, Rabuck A D, Raghavachari K, Foresman J B, Ortiz J V, Cui Q, Baboul A G, Clifford S, Cioslowski J, Stefanov B B, Liu G, Liashenko A, Piskorz P, Komaromi I, Martin R L, Fox D J, Keith T, Al-Laham M A, Peng C Y, Nanayakkara A, Challacombe M, Gill P M W, Johnson B, Chen W, Wong M W, Gonzalez C, Pople J A. Gaussian 03. Revision C.02. Wallingford CT: Gaussian, Inc. 2004
21. W. K. Olson M. Bansal S. K. Burley R. E. Dickerson M. Gerstein S. C. Harvey U. Heinemann X. J. Lu S. Neidle Z. Shakked H. Sklenar M. Suzuki C. S. Tung E. Westhof C. Wolberger H. M. Berman 2001 A standard reference frame for the description of nucleic acid base-pair geometry J Mol Bio 313 229 237