Genetic distribution of human noroviruses detected from acute gastroenteritis patients in Seoul

Korean Journal of Microbiology

Volumn 44, Issue 2, 2008, Pages 135-139

  Kim, Eun Jeung ^a   Park, Sang Hun ^a   Song, Mi Ok ^a   Kim, Moo Sang ^a   Kim, Min Young ^a   Cheon, Doo Sung ^b   Jeong, Hae Sook ^b   Kim, Chul Joong ^c  

^a Seoul National University Boramae Hospital   (South Korea)

^b Korea Centers for Disease Control and Prevention   (South Korea)

^c Chungnam National University   (South Korea)

Author keywords

Genotype; Norovirus; RT PCR; Sequencing

Indexed keywords

NOROVIRUS;

EID: 57349129584     PISSN: 04402413     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (28)

1. Ando, A., K. Mattick, D. Lewis, M. Estesw, X. Jiang, J. Green, R. Eglin, and D. Brown, 2000. Distinct epidemiology patterns of Norwalk-like virus infection. J. Med Virol. 62, 99-103.
2. Ando, T., M.N. Mulders, D.C. Lewis, M.K. Estes, S.S. Onroe, and R.I. Glass. 1994. Comparison of the polymerase region of small round structured virus strains previously classified in three antigenic types by solid-phase immune electron microscopy. Arch. Virol. 135, 217-226.
3. Atmar, R.L. and M.K. Estes. 2001. Diagnosis of noncultivatable gastroenteritis viruses, the human caliciviruses. Clin. Microbiol. Rev. 14, 15-37.
4. Dey, S.K., T.A. Nguyen, T.G. Phan, O. Nishio, A.F. Salim, M, Rahman, F. Yagyu, S. Okitsu, and H. Ushijima. 2007. Molecular and epidemiological trend of norovirus associated gastroenteritis in Dhaka City, Bangladesh. Clin. Virol. 9, 17.
5. Dingle, K.E., P.R. Lambden, E.O. Caul, and I.N. Clarke. 1995. Human enteric Caliciviridae: the complete genome sequence and expression of virus-like particles from a genetic group II small round structured virus. J. Gen. Virol. 76, 2349-2355.
6. Fang, Z.Y., H.P. Xie, H.X. Lv, Q. Zhang, Z.J. Duan, D. Steele, B. Jiang, and X. Jiang. 2007. Investigation of human calicivirus (HuCV) diarrhea among infantile and young children in China, 1999-2005. Bing. Du. Xue. Bao. 23, 5-9.
7. Gomes, K.A., J.A. Stupka, J. Gomez and G.I. Parra. 2007. Molecular characterization of calicivirus strains detected in outbreaks of gastroenteritis in Argentina. J. Med. Virol. 79, 1703-1709.
8. Green, S.M., K.E. Dingle, P.R. Lambdeb, E.O. Caul, C.R. Ashley, and I.N. Clarke. 1994. Human enteric Caliciviridae: a new prevalent SRSV group defined by RNA-dependent RNA polymerase and capsid diversity. J. Gen. Virol. 75, 1883-1888.
9. Guntapong, R., G.S. Hansman, T. Oka, S. Ogawa, T. Kageyama, Y. Pongsuwanna, and K. Katayama. 2004. Norovirus and sapovirus infections in Thailand. Jpn. J. Infect. Dis. 57, 276-278.
10. Hale, A., S.E. Crawford, M. Ciarlet, J. Green, C.I. Gallimore, D.W.G. Brown, X. Jiang, and M.K. Estes. 1999. Expression and self-assembly of Grimsby virus antigenic distinction from Norwalk virus and Mexico viruses. Clin. Diagn. Lab. Immunol. 6, 142-146.
11. Hansman, G.S., L.T. Doan, T.A. Kguyen, S. Okitsu, K. Katayama, S. Ogawa, K. Natori, N. Takeda, Y. Kato, O. Nishio, M. Noda, and H. Ushijima. 2004a. Detection of norovirus and sapovirus infection among children with gastroenteritis on Ho Chi Minh City, Vietnam. Arch. Virol. 149, 1673-1688.
12. Hansman, G.S., K. Katayama, N. Maneekarn, S. Peerakome, P. Khamrin, S. Tonusin, S. Okitsu, O. Nishio, N. Takeda, and H. Ushijia. 2004b. Genetic diversity of norovirus and sapovirus in hospitalized infants with sporadic cases of acute gastroenteritis in Chiang Mai, Thailand. J. Clin. Microbiol. 42, 1305-1307.
13. Ho, E.C., P.K. Cheng, A.W. Lau, A.H. Wong, and W.W. Lim. 2007. Atypical norovirus epidemic in Hong Kong during summer of 2006 caused by a new genogroup II/4 variant. J. Clin. Microbiol. 45, 2205-2211.
14. Jia, L.P., Y. Qian, Y. Zhang, D.M. Chen, Y. Gao, and Q. Xu. 2007. Norovirus associated outbreaks of acute gastroenteritis in hospitals in Beijing in late 2006. Zhonghua Liu Xing Bing Xue Za Zhi. 28, 213-217.
15. Jiang, X., D. Cubitt, J. Hu, X. Dai, J. Treanor, D.O. Matson, and L.K. Pickering. 1995. Development of an ELISA to detect MX virus, a human calicivirus in the Snow Mount agent group. J. Gen. Virol. 76, 2739-2747.
16. Jiang, X., D.O. Matson, W.D. Cubitt, and M.K. Estes. 1996. Genetic and antigenic diversity of human caliciviruses (HuCVs) using RT-PCR and new EIAs. Arch. Viol. 12, 251-262.
17. Jiang, X., J. Wang, D.Y. Graham, and M.K. Estes. 1992. Detection of norwalk virus in stool by polymerase chain reaction. J. Clin. Microbiol. 30, 2529-2534.
18. Jiang, X., N. Wilton, W.M. Zhang, T. Farkas, P.W. Huang, E. Barrett, M. Guerrero, G. Ruiz-Palacios, K.Y. Green, J. Green, A.D. Hale, M.K. Estes, L.K. Pickering, and D.O. Matson. 2000. Diagnosis of human Caliciviruses by use of enzyme immunoassays. J. Infect. Dis. 181, 349-359.
19. Kageyama, T., M. Shinohara, K. Uchida, S. Fukushi, F.B. Hoshino, S. Kojima, R. Takai, T. Oka, N. Takeda, and K. Katayama. 2004. Coexistence of multiple genotypes, including newly identified genotypes, in outbreaks of gastroenteritis due to Norovirus in Japan. J. Clin. Microbiol. 42, 2988-2995.
20. Katayama, K., H. Shirato-Horikoshi, S. Kojima, T. Kageyama, T. Oka, F.B. Hoshino, S. Fukushi, M. Shinohara, K. Uchida, Y. Suzuki, T. Gojobori, and N. Takeda. 2002. Phylogenetic analysis of the complete genome of 18 Norwalk-like viruses. J. Virol. 299, 225-239.
21. Lambden, P.R., E.O. Caul, C.R. Ashley, and I.N. Clarke. 1993. Sequence and genome organization of a human small round-structured virus. Science 259, 516-519.
22. Leite, J.P.G., T. Ando, J.S. Noel, B. Jiang, C.D. Humphrey, J.F. Lew, K.Y. Green, R.I. Glass, and S.S. Monroe. 1996. Characterization of Toronto virus capsid protein expressed in baculovirus. Arch. Virol. 141, 865-875.
23. Okada, M., T. Ogawa, H. Yoshizumi, H. Kubonoya, and K. Shinozaki. 2007. Genetic variation of the norovirus GII-4 genotype associated with a large number of outbreaks on Chiba prefecture, Japan. Arch. Virol. 14, 56-59.
24. Phan, T.G., K. Kaneshi, Y. Usda, S. Nakaya, S. Nishimura, A. Yamamoto, K. Sugita, S. Takanashi, S. Okitsu, and H. Ushijima. 2007. Genetic heterogeneity, evolution, and recombination in noroviruses. J. Med Virol. 79, 1388-1400.
25. Shiota, T., M. Okame, S. Takanashi, P. Hhamrin, M. Takagi, K. Satou, Y. Masuoka, F. Yagyu, Y. Shimizu, H. Kohno, M. Mizuguchi, S. Ohitsu, and H. Ushijima. 2007. Characterization of broadly reactive monoclonal antibody against norovirus genogroup I and II: Recognition of a Novel conformational Epitope. J. Virol. 81, 12298-12306.
26. Siebenga, J.J., H. Vennema, E. Duize, and M.P.G. Koopmans. 2007. Gastroenteritis caused by norovirus GGII.4, the Netherlands, 1994-2005. Emerg. Infect. Dis. 13, 144-146.
27. Wu, F.T., T. Oka, K. Katayama, H.S. Wu, Donald, D.S. Jiang, T. Miyamura, N. Takeda, and G.S. Hansman. 2006. Genetic diversity of noroviruses in Taiwan between November 2004 and March 2005. Arch. Virol. 151, 1319-1327.
28. Yoon, J.S., S.G. Lee, S.K. Hong, S.A. Lee, W.H. Jheong, S.S. Oh, M.H. Oh, G.P. Ko, C.H. Lee, and S.Y. Paik. 2008. Molecular epidemiology of norovirus infections in children with acute gastroenteritis in South Korea in November 2005 through November 2006. J. Clin. Microbiol. 46, 1474-1477.