Identification of Staphylococcus spp. by PCR-restriction fragment length polymorphism analysis of dnaJ gene

Journal of Clinical Microbiology

Volumn 46, Issue 12, 2008, Pages 3875-3879

  Hauschild, Tomasz ^a   Stepanović, Srdjan ^b  

^a UNIVERSITY OF BIALYSTOK   (Poland)

^b UNIVERSITY OF BELGRADE   (Serbia)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN DNAJ;

ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; STAPHYLOCOCCUS;

BACTERIAL PROTEINS; DNA FINGERPRINTING; DNA, BACTERIAL; HSP40 HEAT-SHOCK PROTEINS; HUMANS; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SENSITIVITY AND SPECIFICITY; STAPHYLOCOCCAL INFECTIONS; STAPHYLOCOCCUS;

STAPHYLOCOCCUS;

EID: 57349117826     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.00810-08     Document Type: Article

References (25)

1. Barros, E. M., N. L. Iório, C. Bastos Mdo, K. R. dos Santos, and M. Giambiagi-deMarval. 2007. Species-level identification of clinical staphylococcal isolates based on polymerase chain reaction-restriction fragment length polymorphism analysis of a partial groEL gene sequence. Diagn. Microbiol. Infect. Dis. 59:251-257.
2. Becker, K., D. Harmsen, A. Mellmann, C. Meier, P. Schumann, G. Peters, and C. von Eiff. 2004. Development and evaluation of a quality-controlled ribosomal sequence database for 16S ribosomal DNA-based identification of Staphylococcus species. J. Clin. Microbiol. 42:4988-4995.
3. Cirkovic, I., S. Stepanovic, D. Vukovic, M. Svabic-Vlahovic, V. Dimitrijeviæ, and T. Hauschild. 2008. Evaluation of the BD Phoenix automated microbiology system for detecting methicillin-resistant Staphylococcus aureus. Int. J. Antimicrob. Agents 32:94-95.
4. Couto, I., S. Pereira, M. Miragaia, I. S. Sanches, and H. de Lencastre. 2001. Identification of clinical staphylococcal isolates from humans by internal transcribed spacer PCR. J. Clin. Microbiol. 39:3099-3103.
5. Drancourt, M., and D. Raoult. 2002. rpoB gene sequence-based identification of Staphylococcus species. J. Clin. Microbiol. 40:1333-1338.
6. Grant, C. E., D. L. Sewell, M. Pfaller, R. V. Bumgardner, and J. A. Williams. 1994. Evaluation of two commercial systems for identification of coagulase-negative staphylococci to species level. Diagn. Microbiol. Infect. Dis. 18:1-5.
7. Heikens, E., A. Fleer, A. Paauw, A. Florijn, and A. C. Flui. 2005. Comparison of genotypic and phenotypic methods for species-level identification of clinical isolates of coagulase-negative staphylococci. J. Clin. Microbiol. 43:2286-2290.
8. Ieven, M., J. Verhoeven, S. R. Pattyn, and H. Goossens. 1995. Rapid and economical method for species identification of clinically significant coagulase-negative staphylococci. J. Clin. Microbiol. 33:1060-1063.
9. Kloos, W. E., K.-H. Schleifer, and R. Götz. 1991. The genus Staphylococcus, p. 1369-1420. In A. Balows, A. H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer (ed.). The procaryotes: a handbook on the biology of bacteria: ecophysiology, isolation, identification, application, 2nd ed. Springer, New York, NY.
10. Kontos, F., E. Petinaki, I. Spiliopoulou, M. Maniati, and A. N. Maniatis. 2003. Evaluation of a novel method based on PCR restriction fragment length polymorphism analysis of the tuf gene for the identification of Staphylococcus species. J. Microbiol. Methods 55:465-469.
11. Kwok, A. Y., and A. W. Chow. 2003. Phylogenetic study of Staphylococcus and Macrococcus species based on partial hsp60 gene sequences. Int. J. Syst. Evol. Microbiol. 53:87-92.
12. Martineau, F., F. J. Picard, D. Ke, S. Paradis, P. H. Roy, M. Ouellette, and M. G. Bergeron. 2001. Development of a PCR assay for identification of staphylococci at genus and species levels. J. Clin. Microbiol. 39:2541-2547.
13. Mellmann, A., K. Becker, C. von Eiff, U. Keckevoet, P. Schumann, and D. Harmsen. 2006. Sequencing and staphylococci identification. Emerg. Infect. Dis. 12:333-336.
14. Mendoza, M., H. Meugnier, M. Bes, J. Etienne, and J. Freney. 1998. Identification of Staphylococcus species by 16S-23S rDNA intergenic spacer PCR analysis. Int. J. Syst. Bacteriol. 48:1049-1055.
15. Perl, T. M., P. R. Rhomberg, M. J. Bale, P. C. Fuchs, R. N. Jones, F. P. Koontz, and M. A. Pfaller. 1994. Comparison of identification systems for Staphylococcus epidermidis and other coagulase-negative Staphylococcus species. Diagn. Microbiol. Infect. Dis. 18:151-155.
16. Renneberg, J., K. Rieneck, and E. Gutschik. 1995. Evaluation of Staph ID 32 system and Staph-Zym system for identification of coagulase-negative staphylococci. J. Clin. Microbiol. 33:1150-1153.
17. Shah, M. M., H. Iihara, M. Noda, S. X. Song, P. H. Nhung, K. Ohkusu, Y. Kawamura, and T. Ezaki. 2007. dnaJ gene sequence-based assay for species identification and phylogenetic grouping in the genus Staphylococcus. Int. J. Syst. Evol. Microbiol. 57:25-30.
18. Sivadon, V., M. Rottman, J. C. Quincampoix, V. Avettand, S. Chaverot, P. de Mazancourt, P. Trieu-Cuot, and J. L. Gaillard. 2004. Use of sodA sequencing for the identification of clinical isolates of coagulase-negative staphylococci. Clin. Microbiol. Infect. 10:939-942.
19. Stackebrandt, E., and B. M. Goebel. 1994. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846-849.
20. Stepanovic, S., I. Dakic, D. Morrison, T. Hauschild, P. Jezek, P. Petras, A. Martel, D. Vukovic, A. Shittu, and L. A. Devriese. 2005. Identification and characterization of clinical isolates of members of the Staphylococcus sciuri group. J. Clin. Microbiol. 43:956-958.
21. Sudagidan, M., A. F. Yenidunya, and H. Gunes. 2005. Identification of staphylococci by 16S internal transcribed spacer rRNA gene restriction fragment length polymorphism. J. Med. Microbiol. 54:823-826.
22. Takahashi, T., I. Satoh, and N. Kikuchi. 1999. Phylogenetic relationships of 38 taxa of the genus Staphylococcus based on 16S rRNA gene sequence analysis. Int. J. Syst. Bacteriol. 49:725-728.
23. Vannuffel, P., M. Heusterspreute, M. Bouyer, B. Vandercam, M. Philippe, and J. L. Gala. 1999. Molecular characterization of femA from Staphylococcus hominis and Staphylococcus saprophyticus, and femA-based discrimination of staphylococcal species. Res. Microbiol. 150:129-141.
24. Yugueros, J., A. Temprano, B. Berzal, M. Sánchez, C. Hernanz, J. M. Luengo, and G. Naharro. 2000. Glyceraldehyde-3-phosphate dehydrogenase-encoding gene as a useful taxonomic tool for Staphylococcus spp. J. Clin. Microbiol. 38:4351-4355.
25. Yugueros, J., A. Temprano, M. Sánchez, J. M. Luengo, and G. Naharro. 2001. Identification of Staphylococcus spp. by PCR-restriction fragment length polymorphism of gap gene. J. Clin. Microbiol. 39:3693-3695.