-
1
-
-
36849044810
-
Computational Approaches for Protein Function Prediction: A Survey
-
G. Pandey, V. Kumar, and H. Steinbach, "Computational Approaches for Protein Function Prediction: A Survey," TR 06-028, 2006.
-
(2006)
TR 06-028
-
-
Pandey, G.1
Kumar, V.2
Steinbach, H.3
-
2
-
-
0034308142
-
Practical limits of function prediction
-
D.Devos and A.Valencia, "Practical limits of function prediction," Proteins, vol. 41, pp. 98-107, 2000.
-
(2000)
Proteins
, vol.41
, pp. 98-107
-
-
Devos, D.1
Valencia, A.2
-
3
-
-
33746664765
-
Can sequence determine function?
-
J. A. Gerlt and P. C. Babbit, "Can sequence determine function?" Genome Biology, vol. 1, 2000.
-
(2000)
Genome Biology
, vol.1
-
-
Gerlt, J.A.1
Babbit, P.C.2
-
4
-
-
0346731042
-
Automatic prediction of protein function
-
B. Rost, J. Liu, R. Nair, K. O. Wrzeszczynski, and Y. Ofran, "Automatic prediction of protein function," Cell Mol Life Sci., vol. 60, pp. 2637-2650, 2003.
-
(2003)
Cell Mol Life Sci
, vol.60
, pp. 2637-2650
-
-
Rost, B.1
Liu, J.2
Nair, R.3
Wrzeszczynski, K.O.4
Ofran, Y.5
-
5
-
-
33744482316
-
Functional annotation prediction: All for one and one for all
-
June 1
-
O. Sasson, N. Kaplan, and M. Linial, "Functional annotation prediction: All for one and one for all," Protein Sci, vol. 15, pp. 1557-1562, June 1, 2006 2006.
-
(2006)
Protein Sci
, vol.15
, pp. 1557-1562
-
-
Sasson, O.1
Kaplan, N.2
Linial, M.3
-
6
-
-
0029006062
-
The multiplicity of domains in proteins
-
R. F. Dolittle, "The multiplicity of domains in proteins," Annu. Rev. Biochem, vol. 64, pp. 287-314, 1995.
-
(1995)
Annu. Rev. Biochem
, vol.64
, pp. 287-314
-
-
Dolittle, R.F.1
-
8
-
-
33846069758
-
Ensemblator: An ensemble of classifiers for reliable classification of biological data
-
L. Nanni and A. Lumini, "Ensemblator: An ensemble of classifiers for reliable classification of biological data," Pattern Recognition Letters, vol. 28, pp. 622-630, 2007.
-
(2007)
Pattern Recognition Letters
, vol.28
, pp. 622-630
-
-
Nanni, L.1
Lumini, A.2
-
9
-
-
18444390875
-
Prediction of Human Protein Function from Post-translational Modifications and Localization Features
-
L. J. Jensen, R. Gupta, N. Blom, D. Devos, J. Tamames, C. Kesmir, H. Nielsen, H. H. Staerfeldt, K. Rapacki, C. Workman, C. A. F. Andersen, S. Knudsen, A. Krogh, A. Valencia, and S. Brunak, "Prediction of Human Protein Function from Post-translational Modifications and Localization Features," Journal of Molecular Biology, vol. 319, pp. 1257-1265, 2002.
-
(2002)
Journal of Molecular Biology
, vol.319
, pp. 1257-1265
-
-
Jensen, L.J.1
Gupta, R.2
Blom, N.3
Devos, D.4
Tamames, J.5
Kesmir, C.6
Nielsen, H.7
Staerfeldt, H.H.8
Rapacki, K.9
Workman, C.10
Andersen, C.A.F.11
Knudsen, S.12
Krogh, A.13
Valencia, A.14
Brunak, S.15
-
10
-
-
36749047332
-
Supervised Machine Learning: A Review of Classification Techniques
-
S. B. Kotsiantis, "Supervised Machine Learning: A Review of Classification Techniques," Informatica, vol. 31, pp. 249-268, 2007.
-
(2007)
Informatica
, vol.31
, pp. 249-268
-
-
Kotsiantis, S.B.1
-
11
-
-
3242892058
-
GPCRpred: An SVMbased method for prediction of families and subfamilies of Gprotein coupled receptors
-
M. Bhasin and G. P. Raghava, "GPCRpred: an SVMbased method for prediction of families and subfamilies of Gprotein coupled receptors," Nucleic Acids Research, vol. 32, pp. 383-389, 2004.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 383-389
-
-
Bhasin, M.1
Raghava, G.P.2
-
12
-
-
0042622243
-
SVM-Prot: Web-based support vector machine software for functional classification of a protein from its primary sequence
-
C. Z. Cai, L. Y. Han, Z. L. Ji, X. Chen, and Y. Z. Chen, "SVM-Prot: Web-based support vector machine software for functional classification of a protein from its primary sequence " Nucleic Acids Research, vol. 31, pp. 3692-3697 2003.
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 3692-3697
-
-
Cai, C.Z.1
Han, L.Y.2
Ji, Z.L.3
Chen, X.4
Chen, Y.Z.5
-
13
-
-
20844436424
-
Predicting enzyme subclass by functional domain composition and pseudo amino acid composition
-
Y. D. Cai and K. C. Chou, "Predicting enzyme subclass by functional domain composition and pseudo amino acid composition," Journal Protein Research, vol. 4, 2005.
-
(2005)
Journal Protein Research
, vol.4
-
-
Cai, Y.D.1
Chou, K.C.2
-
14
-
-
33947407691
-
Prediction of the functional class of metal-binding proteins from sequence derived physicochemical properties by support vector machine approach
-
H. H. Lin, L. Y. Han, H. L. Zhang, C. J. Zheng, B. Xie, Z. W. Cao, and Y. Z. Chen, "Prediction of the functional class of metal-binding proteins from sequence derived physicochemical properties by support vector machine approach," BMC Bioinformatics vol. 47, pp. 824-831, 2006.
-
(2006)
BMC Bioinformatics
, vol.47
, pp. 824-831
-
-
Lin, H.H.1
Han, L.Y.2
Zhang, H.L.3
Zheng, C.J.4
Xie, B.5
Cao, Z.W.6
Chen, Y.Z.7
-
15
-
-
79952378646
-
Prediction of Functional Class of Proteins and Peptides Irrespective of Sequence Homology by Support Vector Machines
-
Z. Q. Tang, H. H. Lin, H. I. Zhang, L. Y. Han, X. Chen, and Y. Z. Chen, "Prediction of Functional Class of Proteins and Peptides Irrespective of Sequence Homology by Support Vector Machines," Bioinformatics and Biology Insights, vol. 1, pp. 19-47, 2007.
-
(2007)
Bioinformatics and Biology Insights
, vol.1
, pp. 19-47
-
-
Tang, Z.Q.1
Lin, H.H.2
Zhang, H.I.3
Han, L.Y.4
Chen, X.5
Chen, Y.Z.6
-
16
-
-
0000875752
-
Accurate Prediction of Protein Functional Class from Sequence in the Mycobacterium tuberculosis and Escherichia coli Genomes using Data Mining
-
R. D. King, A. Karwath, A. Clare, and L. Dehaspe, "Accurate Prediction of Protein Functional Class from Sequence in the Mycobacterium tuberculosis and Escherichia coli Genomes using Data Mining," Yeast, vol. 17, pp. 283-293, 2000.
-
(2000)
Yeast
, vol.17
, pp. 283-293
-
-
King, R.D.1
Karwath, A.2
Clare, A.3
Dehaspe, L.4
-
17
-
-
0037460964
-
Prediction of human protein function according to Gene Ontology categories
-
L. J. Jensen, R. Gupta, H.-H. Stærfeldt, and S. Brunak, "Prediction of human protein function according to Gene Ontology categories," Bioinformatics, vol. 19, pp. 635-642, 2003.
-
(2003)
Bioinformatics
, vol.19
, pp. 635-642
-
-
Jensen, L.J.1
Gupta, R.2
Stærfeldt, H.-H.3
Brunak, S.4
-
18
-
-
1442275650
-
Enzyme family classification by support vector machines
-
C. Z. Cai, L. Y. Han, Z. L. Ji, and e. al, "Enzyme family classification by support vector machines," Proteins, vol. 55, pp. 66-76, 2004.
-
(2004)
Proteins
, vol.55
, pp. 66-76
-
-
Cai, C.Z.1
Han, L.Y.2
Ji, Z.L.3
al, E.4
-
19
-
-
0035006162
-
The utility of different representations of protein sequence for predicting functional class
-
R. D. King, A. Karwath, A. Clare, and L. Dehaspe, "The utility of different representations of protein sequence for predicting functional class," Bioinformatics, vol. 17, pp. 445-454, 2001.
-
(2001)
Bioinformatics
, vol.17
, pp. 445-454
-
-
King, R.D.1
Karwath, A.2
Clare, A.3
Dehaspe, L.4
-
20
-
-
33644630561
-
Franksum: New Feature Selection Method For Protein Function Prediction
-
A. Al-Shahib, R. Breitling, and D. Gilbert, "Franksum: New Feature Selection Method For Protein Function Prediction," International Journal Of Neural Systems, vol. 15, pp. 259-275, 2005.
-
(2005)
International Journal Of Neural Systems
, vol.15
, pp. 259-275
-
-
Al-Shahib, A.1
Breitling, R.2
Gilbert, D.3
-
22
-
-
57349153954
-
Human Protein Function Prediction using Decision Tree Induction
-
M. Singh, P. K. Wadhwa, and P. S. Sandhu, "Human Protein Function Prediction using Decision Tree Induction," International Journal of Computer Science and Network Security, vol. 7, pp. 92-98, 2007.
-
(2007)
International Journal of Computer Science and Network Security
, vol.7
, pp. 92-98
-
-
Singh, M.1
Wadhwa, P.K.2
Sandhu, P.S.3
-
23
-
-
33747816816
-
PROFEAT: A web server for computing structural and physicochemical features of proteins and peptides from amino acid sequences
-
Z. R. Li, H. H. Li, L. Y. Han, L. Jiang, X. Chen, and Y. Z. Chen, "PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequences," Nucleic Acids Res, vol. 34, pp. 32-37, 2006.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 32-37
-
-
Li, Z.R.1
Li, H.H.2
Han, L.Y.3
Jiang, L.4
Chen, X.5
Chen, Y.Z.6
-
24
-
-
35748932917
-
A review of feature selection techniques in bioinformatics
-
October 1
-
Y. Saeys, I. Inza, and P. Larranaga, "A review of feature selection techniques in bioinformatics," Bioinformatics, vol. 23, pp. 2507-2517, October 1, 2007 2007.
-
(2007)
Bioinformatics
, vol.23
, pp. 2507-2517
-
-
Saeys, Y.1
Inza, I.2
Larranaga, P.3
-
26
-
-
84957069814
-
Text Categorization with Support Vector Machines: Learning with Many Relevant Features
-
Cheminitz, Germany
-
T. Joachims, "Text Categorization with Support Vector Machines: Learning with Many Relevant Features," in 10th European Conference on Machine Learning, Cheminitz, Germany, 1997, pp. 137-142.
-
(1997)
10th European Conference on Machine Learning
, pp. 137-142
-
-
Joachims, T.1
-
27
-
-
9644283060
-
Predicting enzyme class from protein structure without allignments
-
P. D. Dobson and A. J. Doig, "Predicting enzyme class from protein structure without allignments," Journal Mol. Biol., vol. 345, pp. 187-189, 2005.
-
(2005)
Journal Mol. Biol
, vol.345
, pp. 187-189
-
-
Dobson, P.D.1
Doig, A.J.2
-
28
-
-
85102984788
-
Prediction of the functional class of lipid binding proteins from sequencederived properties irrespective of sequence similarity
-
M. Kumar, R. Verma, and G. P. Raghava "Prediction of the functional class of lipid binding proteins from sequencederived properties irrespective of sequence similarity," J. Lipid Research, vol. 281, pp. 824-831, 2006.
-
(2006)
J. Lipid Research
, vol.281
, pp. 824-831
-
-
Kumar, M.1
Verma, R.2
Raghava, G.P.3
|