Comparative phylogeography of two seastars and their ectosymbionts within the Coral Triangle

Molecular Ecology

Volumn 17, Issue 24, 2008, Pages 5276-5290

  Crandall, Eric D ^a,b   Jones, M Elizabeth ^b   Muñoz, Martha M ^b   Akinronbi, Bolanle ^c   Erdmann, Mark V ^d   Barber, Paul H ^b,e  

^a OLD DOMINION UNIVERSITY   (United States)

^b BOSTON UNIVERSITY MARINE PROGRAM   (United States)

^c RUTGERS UNIVERSITY   (United States)

^d Indonesia Marine Program ^*  (Indonesia)

^e UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Coral Triangle; Demography; Host parasite; Indo Pacific; Linckia; mtDNA; Periclimenes; Phylogeography; Protoreaster; Symbiont; Thyca

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ANTHOZOA; ARTICLE; COMPARATIVE STUDY; DECAPODA (CRUSTACEA); DNA SEQUENCE; ECOSYSTEM; GASTROPOD; GENETICS; GEOGRAPHY; HAPLOTYPE; INDIAN OCEAN; INDONESIA; MOLECULAR EVOLUTION; PACIFIC OCEAN; PHYLOGENY; POPULATION GENETICS; SEQUENCE ALIGNMENT; SPECIES DIFFERENCE; SYMBIOSIS;

ANIMALS; ANTHOZOA; DECAPODA (CRUSTACEA); DNA, MITOCHONDRIAL; ECOSYSTEM; EVOLUTION, MOLECULAR; GASTROPODA; GENETICS, POPULATION; GEOGRAPHY; HAPLOTYPES; INDIAN OCEAN; INDONESIA; PACIFIC OCEAN; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; SYMBIOSIS;

ANTHOZOA; DECAPODA (CRUSTACEA); GASTROPODA; LINCKIA; LINCKIA LAEVIGATA; PERICLIMENES; PERICLIMENES SOROR;

EID: 57349092645     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2008.03995.x     Document Type: Article

References (94)

1. Arbogast BS, Kenagy GJ (2001) Comparative phylogeography as an integrative approach to historical biogeography. Journal of Biogeography, 28, 819 825.
2. Avise JC (2000) Phylogeography - the History and Formation of Species. Harvard University Press, Cambridge, MA.
3. Barber PH, Palumbi SR, Erdmann MV, Moosa MK (2000) A marine Wallace's line? Nature, 406, 692 693.
4. Barber PH, Moosa MK, Palumbi SR (2002a) Rapid recovery of genetic populations on Krakatau: diversity of stomatopod temporal and spatial scales of marine larval dispersal. Proceedings of the Royal Society of London, Series B: Biological Sciences, 269, 1591 1597.
5. Barber PH, Palumbi SR, Erdmann MV, Moosa MK (2002b) Sharp genetic breaks among populations of Haptosquilla pulchella (Stomatopoda) indicate limits to larval transport: patterns, causes, and consequences. Molecular Ecology, 11, 659 674.
6. Barber PH, Erdmann MV, Palumbi SR (2006) Comparative phylogeography of three co-distributed stomatopods: origins and timing of regional lineage diversification in the coral triangle. Evolution, 60, 1825 1839.
7. Bay LK, Crozier RH, Caley MJ (2006) The relationship between population genetic structure and pelagic larval duration in coral reef fishes on the Great Barrier Reef. Marine Biology, 149, 1247 1256.
8. Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society, Series B: Methodological, 57, 289 300.
9. Benzie JAH (1999) Genetic structure of coral reef organisms: ghosts of dispersal past. American Zoologist, 39, 131 145.
10. Benzie JAH, Ballment E, Forbes AT et al 2002) Mitochondrial DNA variation in Indo-Pacific populations of the giant tiger prawn, Penaeus monodon. Molecular Ecology, 11, 2553 2569.
11. Bermingham E, Moritz C (1998) Comparative phylogeography: concepts and applications. Molecular Ecology, 7, 367 369.
12. Bohonak AJ (1999) Dispersal, gene flow, and population structure. The Quarterly Review of Biology, 74, 21 45.
13. Bowen B, Bass AL, Rocha LA et al 2001) Phylogeography of trumpetfishes (Aulostomus): Ring Species Complex on a Global Scale. Evolution, 55, 1029 1039.
14. Bowen BW, Bass AL, Muss A et al 2006) Phylogeography of two Atlantic squirrelfishes (Family Holocentridae): exploring links between pelagic larval duration and population connectivity. Marine Biology, 149, 899 913.
15. Bruce AJ (1976) Coral reef Caridea and 'Commensalism'. Micronesica, 12, 83 98.
16. Carey S, Sigurdsson H, Mandeville C, Bronto S (1996) Pyroclastic flows and surges over water: an example from the 1883 Krakatau eruption. Bulletin of Volcanology, 57, 493 511.
17. Carpenter KE, Springer VG (2005) The center of the center of marine shore fish biodiversity: the Philippine Islands. Environmental Biology of Fishes, 72, 467 480.
18. Carstens BC, Brunsfeld SJ, Demboski JR et al 2005) Investigating the evolutionary history of the Pacific Northwest mesic forest ecosystem: hypothesis testing within a comparative phylogeographic framework. Evolution, 59, 1639 1652.
19. Chenoweth SF, Hughes JM, Keenan CP, Lavery S (1998) When oceans meet: a teleost shows secondary intergradation at an Indian-Pacific interface. Proceedings of the Royal Society of London Series B-Biological Sciences, 265, 415 420.
20. Clement M, Posada D, Crandall KA (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657 1660.
21. Crandall ED, Frey MA, Grosberg RK, Barber PH (2008) Contrasting demographic history and phylogeographical patterns in two Indo-Pacific gastropods. Molecular Ecology, 17, 611 626.
22. Criscione CD, Blouin MS (2007) Parasite phylogeographical congruence with salmon host evolutionarily significant units: implications for salmon conservation. Molecular Ecology, 16, 993 1005.
23. Dawson MN, Louie KD, Barlow M et al 2002) Comparative phylogeography of sympatric sister species, Clevelandia ios and Eucyclogobius newberryi (Teleostei, Gobiidae), across the California Transition Zone. Molecular Ecology, 11, 1065 1075.
24. Deboer TS, Subia MD, Erdmann MV et al 2008) Phylogeography and limited genetic connectivity in the endangered boring giant clam across the Coral Triangle. Conservation Biology, 22, 1255 1266.
25. DeChaine EG, Martin AP (2006) Using coalescent simulations to test the impact of quaternary climate cycles on divergence in an alpine plant-insect association. Evolution, 60, 1004 1013.
26. Drummond AJ (2003) beastv.1.4.1. Available from http://beast.bio.ed.ac. uk/.
27. Drummond AJ, Nicholls GK, Rodrigo AG, Solomon W (2002) Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics, 161, 1307 1320.
28. Drummond AJ, Rambaut A, Shapiro B, Pybus OG (2005) Bayesian coalescent inference of past population dynamics from molecular sequences. Molecular Biology and Evolution, 22, 1185 1192.
29. Duda TF, Palumbi SR (1999b) Population structure of the black tiger prawn, Penaeus monodon, among western Indian Ocean and western Pacific populations. Marine Biology, 134, 705 710.
30. Egloff DA, Smouse Jr. DT, Pembroke JE (1988) Penetration of the radial hemal and perihemal systems of Linckia laevigata (Asteroidea) by the proboscis of Thyca crystallina, an ectoparasitic gastropod. Veliger, 30, 342 346.
31. Elder HY (1979) Studies on the host parasite relationship between the parasitic prosobranch Thyca crystallina and the asteroid starfish Linckia laevigata. Journal of Zoology, 187, 369 391.
32. Excoffier L, Laval LG, Schneider S (2005) Arlequin v.3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47 50.
33. Fauvelot C, Bernardi G, Planes S (2003) Reductions in the mitochondrial DNA diversity of coral reef fish provide evidence of population bottlenecks resulting from Holocene sea-level change. Evolution, 57, 1571 1583.
34. Folmer O, Black M, Hoeh WR et al 1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294 299.
35. Fu Y-X (1997) Statistical tests of neutrality against population growth, hitchhiking and background selection. Genetics, 147, 915 925.
36. Funk DJ, Helbling L, Wernegreen JJ, Moran NA (2000) Intraspecific phylogenetic congruence among multiple symbiont genomes. Proceedings of the Royal Society of London Series B-Biological Sciences, 267, 2517 2521.
37. Gerlach G, Atema J, Kingsford MJ et al 2007) Smelling home can prevent dispersal of reef fish larvae. Proceedings of the National Academy of Sciences, USA, 104, 858 863.
38. Hall R (2002) Cenozoic geological and plate tectonic evolution of SE Asia and the SW Pacific: computer-based reconstructions, model and animations. Journal of Asian Earth Sciences, 20, 353 431.
39. Hart MW, Byrne M, Smith MJ (1997) Molecular phylogenetic analysis of life-history evolution in Asterinid starfish. Evolution, 51, 1848 1861.
40. Hedrick PW (2005) A standardized genetic differentiation measure. Evolution, 59, 1633 1638.
41. Hickerson MJ, Stahl EA, Lessios HA (2006) Test for simultaneous divergence using approximate Bayesian computation. Evolution, 60, 2435 2453.
42. Ho SYW, Phillips MJ, Cooper A, Drummond AJ (2005) Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Molecular Biology and Evolution, 22, 1561 1568.
43. Imron Jeffrey B, Hale P, Degnan BM, Degnan SM (2007) Pleistocene isolation and recent gene flow in Haliotis asinina, an Indo-Pacific vetigastropod with limited dispersal capacity. Molecular Ecology, 16, 289 304.
44. Jablonski D, Lutz R (1983) Larval ecology of marine benthic invertebrates: paleobiological implications. Biological Reviews of the Cambridge Philosophical Society, 58, 21 89.
45. Knowlton N, Weigt LA (1998) New dates and new rates for divergence across the Isthmus of Panama. Proceedings of the Royal Society of London, Series B: Biological Sciences, 265, 2257 2263.
46. LaJeunesse TC, Bhagooli R, Hidaka M et al 2004) Closely related Symbiodinium spp. differ in relative dominance in coral reef host communities across environmental, latitudinal and biogeographic gradients. Marine Ecology-Progress Series, 284, 147 161.
47. Lavery S, Moritz C, Fielder DR (1996) Indo-Pacific population structure and evolutionary history of the coconut crab Birgus latro. Molecular Ecology, 5, 557 570.
48. Li XZ, Bruce AJ (2006) Further Indo-West Pacific palaemonoid shrimps (Crustacea: Decapoda: Palaemonoidea), principally from the New Caledonian region. Journal of Natural History, 40, 611 738.
49. Lourie SA, Green DM, Vincent CJ (2005) Dispersal, habitat differences, and comparative phylogeography of Southeast Asian seahorses (Syngnathidae: Hippocampus). Molecular Ecology, 14, 1073 1094.
50. Maddison WP, Maddison DR (2002) Macclade. Sinauer Associates, Sunderland, MA.
51. Mandeville CW, Carey S, Sigurdsson H (1996) Sedimentology of the Krakatau 1883 submarine pyroclastic deposits. Bulletin of Volcanology, 57, 512 529.
52. Marko PB (2002) Fossil calibration of molecular clocks and the divergence times of geminate species pairs separated by the Isthmus of Panama. Molecular Biology and Evolution, 19, 2005 2021.
53. Mathews LM, Schubart CD, Neigel JE, Felder DL (2002) Genetic, ecological, and behavioural divergence between two sibling snapping shrimp species (Crustacea: Decapoda: Alpheus). Molecular Ecology, 11, 1427 1437.
54. McMillan WO, Palumbi SR (1995) Concordant evolutionary patterns among indo-west pacific butterflyfishes. Proceedings of the Royal Society of London, Series B: Biological Sciences, 260, 229 236.
55. Meyer CP, Geller JB, Paulay G (2005) Fine scale endemism on coral reefs: archipelagic differentiation in turbinid gastropods. Evolution, 59, 113 125.
56. Nei M, Li W-H (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences, 76, 5269 5273.
57. Nieberding CM, Olivieri I (2007) Parasites: proxies for host genealogy and ecology? Trends in Ecology and Evolution, 22, 156 165.
58. Nieberding C, Morand S, Libois R, Michaux JR (2004) A parasite reveals cryptic phylogeographic history of its host. Proceedings of the Royal Society of London, Series B: Biological Sciences, 271, 2559 2568.
59. Obst M, Funch P, Giribet G (2005) Hidden diversity and host specificity in cycliophorans: a phylogeographic analysis along the North Atlantic and Mediterranean Sea. Molecular Ecology, 14, 4427 4440.
60. Paulay G (1990) Effects of late Cenozoic sea-level fluctuations on the bivalve faunas of tropical oceanic islands. Paleobiology, 16, 415 434.
61. Perrin C, Borsa P (2001) Mitochondrial DNA analysis of the geographic structure of Indian scad mackerel in the Indo-Malay archipelago. Journal of Fish Biology, 59, 1421 1426.
62. Pillans B, Chappell J, Naish TR (1998) A review of the Milankovitch climatic beat: template for Plio-Pleistocene sea-level changes and sequence stratigraphy. Sedimentary Geology, 122, 5 21.
63. Rambaut A, Drummond A (2007) Tracer v1.4. Available from http://beast.bio.ed.ac.uk/.
64. Rawson PD, Burton RS (2006) Molecular evolution at the cytochrome oxidase subunit 2 gene among divergent populations of the intertidal copepod, Tigriopus californicus. Journal of Molecular Evolution, 62, 753 764.
65. Reid DG, Lal K, Mackenzie-Dodds J et al 2006) Comparative phylogeography and species boundaries in Echinolittorina snails in the central Indo-West Pacific. Journal of Biogeography, 33, 990 1006.
66. Richards VP, Thomas JD, Stanhope MJ, Shivji MS (2007) Genetic connectivity in the Florida reef system: comparative phylogeography of commensal invertebrates with contrasting reproductive strategies. Molecular Ecology, 16, 139 157.
67. Riginos C, Victor BC (2001) Larval spatial distributions and other early life-history characteristics predict genetic differentiation in eastern Pacific blennioid fishes. Proceedings of the Royal Society of London, Series B: Biological Sciences, 268, 1931 1936.
68. Roberts CM, McClean CJ, Veron JEN et al 2002) Marine biodiversity hotspots and conservation priorities for tropical reefs. Science, 295, 1280 1284.
69. Rocha LA, Craig MT, Bowen BW (2007) Phylogeography and the conservation of coral reef fishes. Coral Reefs, 26, 513 513.
70. dos Santos A, Calado R, Bartilotti C, Narciso L (2004) The larval development of the partner shrimp Periclimenes sagittifer (Norman, 1861) (Decapoda: Caridea: Palaemonidae: Pontoniinae) described from laboratory-reared material, with a note on chemical cues. Helgoland Marine Research, 58, 129 139.
71. Schneider CJ, Cunningham M, Moritz C (1998) Comparative phylogeography and the history of endemic vertebrates in the Wet Tropics rainforests of Australia. Molecular Ecology, 7, 487 498.
72. Shulman MJ, Bermingham E (1995) Early-life histories, ocean currents, and the population-genetics of Caribbean reef fishes. Evolution, 49, 897 910.
73. Sotka EE (2005) Local adaptation in host use among marine invertebrates. Ecology Letters, 8, 448 459.
74. Taberlet P, Fumagalli L, Wust-Saucy AG, Cosson JF (1998) Comparative phylogeography and postglacial colonization routes in Europe. Molecular Ecology, 7, 453 464.
75. Thacker CE (2004) Population structure in two species of the reef goby Gnatholepis (Teleostei: Perciformes) among four South Pacific island groups. Coral Reefs, 23, 357 366.
76. Thompson AR, Thacker CE, Shaw EY (2005) Phylogeography of marine mutualists: parallel patterns of genetic structure between obligate goby and shrimp partners. Molecular Ecology, 14, 3557 3572.
77. USGS (2007) Coastal & Marine Geology Infobank. (2007) http://walrus.wr.usgs.gov/infobank/.
78. Vogler C, Benzie J, Lessios H et al 2008) A threat to coral reefs multiplied? Four species of crown-of-thorns starfish. Biology Letters, in press. doi:.
79. Voris HK (2000) Special Paper 2: maps of Pleistocene sea levels in Southeast Asia: Shorelines, river systems and time durations. Journal of Biogeography, 27, 1153 1167.
80. Walker D, Avise JC (1998) Principles of phylogeography as illustrated by freshwater and terrestrial turtles in the southeastern United States. Annual Review of Ecology and Systematics, 29, 23 58.
81. Walsh P, Metzger D, Higuchi R (1991) Chelex 100 as a medium for simple extraction of DNA for PCR-based typing of forensic material. Biotechniques, 10, 508 513.
82. Warén A (1980) Revision of the genera Thyca, Stilifer, Scalenostoma, Mucronalia, and Echineulima (Mollusca, Prosobranchia, Eulimidae). Zoologica Scripta, 9, 187 210.
83. Wares JP, Cunningham CW (2001) Phylogeography and historical ecology of the North Atlantic intertidal. Evolution, 55, 2455 2469.
84. Waters JM, O'Loughlin PM, Roy MS (2004) Molecular systematics of some Indo-Pacific asterinids (Echinodermata, Asteroidea): does taxonomy reflect phylogeny? Molecular Phylogenetics and Evolution, 30, 872 878.
85. Watkins M (2005) Pairwise Multiple Tests. (2005) http://www.public.asu. edu/∼mwwatkin/Watkins3.html.
86. Wear RG (1976) Larva of the commensal shrimp Periclimenes (Periclimenes) soror Nobili, 1904 (Crustacea: Decapoda: Pontoniinae) from Fiji. New Zealand Journal of Marine and Freshwater Research, 10, 527 532.
87. Whiteman NK, Parker PG (2005) Using parasites to infer host population history: a new rationale for parasite conservation. Animal Conservation, 8, 175 181.
88. Williams ST (2000) Species boundaries in the starfish genus Linckia. Marine Biology, 136, 137 148.
89. Williams ST, Benzie JAH (1993) Genetic Consequences of Long Larval Life in the Starfish Linckia-Laevigata (Echinodermata, Asteroidea) on the Great- Barrier-Reef, 117, 71 77.
90. Williams ST, Benzie JAH (1997) Indo-West Pacific patterns of genetic differentiation in the high-dispersal starfish. Linckia Laevigata, 6, 559 573.
91. Williams ST, Benzie JAH (1998) Evidence of a biogeographic break between populations of a high dispersal starfish: congruent regions within the Indo-West Pacific defined by color morphs, mtDNA, and allozyme data. Evolution, 52, 87 99.
92. Williams ST, Jara J, Gomez E, Knowlton N (2002) The Marine Indo-West Pacific break: contrasting the resolving power of mitochondrial and nuclear genes. Integrative and Comparative Biology, 42, 941 952.
93. Yamaguchi M (1973) Early life histories of coral reef asteroids, with special reference to Acanthaster planci (L.). In : Biology and Geology of Coral Reefs (eds Jones OA, Endean R pp. 369 387. Academic Press, New York.
94. Yamaguchi M (1977) Larval behavior and geographic distribution of coral reef asteroids in the Indo-West Pacific. Micronesica, 13, 283 296.