Genomic organization of the genes encoding dihydroflavonol 4-reductase for flower pigmentation in the Japanese and common morning glories

Gene

Volumn 226, Issue 2, 1999, Pages 181-188

  Inagaki, Yoshishige ^a,b   Johzuka Hisatomi, Yasuyo ^a,b   Mori, Tomoko ^a   Takahashi, Sakiko ^b   Hayakawa, Yasuo ^b   Peyachoknagul, Surin ^a   Ozeki, Yoshihiro ^a,c   Iida, Shigeru ^a,b  

^a NATIONAL INSTITUTE FOR BASIC BIOLOGY   (Japan)

^b TOKYO UNIVERSITY OF SCIENCE   (Japan)

^c TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (Japan)

Author keywords

Anthocyanin biosynthesis; DFR; Evolution; Gene duplication; Ipomoea; Mobile element

Indexed keywords

ANTHOCYANIN; DIHYDROFLAVONOL 4 REDUCTASE; DNA; FLAVONOL; OXIDOREDUCTASE; UNCLASSIFIED DRUG;

ARTICLE; DNA SEQUENCE; GENE DUPLICATION; INTRON; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYTOCHEMISTRY; PLANT LEAF; PRIORITY JOURNAL;

ALCOHOL OXIDOREDUCTASES; BASE SEQUENCE; DNA PRIMERS; PHYLOGENY; PIGMENTATION; RETROELEMENTS; SEQUENCE HOMOLOGY, NUCLEIC ACID; SOLANACEAE;

CONVOLVULACEAE; EMBRYOPHYTA; IPOMOEA; IPOMOEA PURPUREA;

EID: 0033590642     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(98)00571-X     Document Type: Article

References (30)

1. Beld M., Martin C., Huits H., Stuitje A.S., Gerats A.G.M. Flavonoid synthesis in Petunia hybrida: partial characterization of dihydroflavonol 4-reductase genes. Plant Mol. Biol. 13:1989;491-502.
2. Bongue-Bartelsman M., O'Neill S.D., Tong Y., Yoder J.I. Characterization of the gene encoding dihydroflavonol 4-reductase in tomato. Gene. 138:1994;153-157.
3. Chelly, J., Kahn, A., 1994. RT-PCR and mRNA quantitation. In: Mullis, K.B., Ferré, F., Gibbs, R.A. (Eds.), The Polymerase Chain Reaction. Birkhäuser, Boston, pp. 97-109.
4. Chen M., SanMiguel P., Bennetzen J.L. Sequence organization and conservation in sh2/a1-homologous regions of sorghum and rice. Genetics. 148:1998;435-443.
5. Clegg M.T., Cummings M.P., Durbin M.L. The evolution of plant nuclear genes. Proc. Natl. Acad. Sci. USA. 94:1997;7791-7798.
6. Durbin M.L., Learn G.H. Jr., Huttley G.A., Clegg M.T. Evolution of the chalcone synthase gene family in the genus Ipomea. Proc. Natl. Acad. Sci. USA. 92:1995;3338-3342.
7. Fukuda-Tanaka S., Hoshino A., Hisatomi Y., Habu Y., Hasebe M., Iida S. Identification of new chalcone synthase genes for flower pigmentation in the Japanese and common morning glories. Plant Cell Physiol. 38:1997;754-758.
8. Helariutta Y., Elomaa P., Kotilainen M., Seppänen P., Teeri T.H. Cloning of cDNA coding for dihydroflavonol 4-reductase (DFR) and characterization of dfr expression in the corollas of Gerbera hybrida var. Regina (Compositeae). Plant Mol. Biol. 22:1993;183-193.
9. Hisatomi Y., Yoneda Y., Kasahara K., Inagaki Y., Iida S. DNA rearrangements at the region of the dihydroflavonol 4-reductase gene for flower pigmentation and incomplete dominance in morning glory carrying the mutable flaked mutation. Theor. Appl. Genet. 95:1997;509-515.
10. Hoshino A., Inagaki Y., Iida S. Structural analysis of Tpn1, a transposable element isolated from Japanese morning glory bearing variegated flowers. Mol. Gen. Genet. 247:1995;114-117.
11. Hunt A.G. Messenger RNA 3′ end formation in plants. Annu. Rev. Plant Physiol. Mol. Biol. 45:1994;47-60.
12. Huttley G.A., Durbin M.L., Glover D.E., Clegg M.T. Nucleotide polymorphism in the chalcone synthase-A locus and evolution of the chalcone synthase multigene family of common morning glory Ipomoea purpurea. Mol. Ecol. 6:1997;549-558.
13. Inagaki Y., Hisatomi Y., Suzuki T., Kasahara K., Iida S. Isolation of a Suppressor-Mutator/Enhancer-like transposable element, Tpn1, from Japanese morning glory bearing variegated flowers. Plant Cell. 6:1994;375-383.
14. Inagaki Y., Hisatomi Y., Iida S. Somatic mutations caused by excision of the transposable element, Tpn1, from the DFR gene for pigmentation in sub-epidermal layer of periclinally chimeric flowers of Japanese morning glory and their germinal transmission to their progeny. Theor. Appl. Genet. 92:1996;499-504.
15. Joshi C.P. An inspection of the domain between putative TATA box and translation start site in 79 plant genes. Nucleic Acids Res. 15:1987;6543-6653.
16. Joshi C.P. Putative polyadenylation signals in nuclear genes of higher plants: a compilation and analysis. Nucleic Acids Res. 23:1987;9627-9640.
17. Kristiansen K.N., Rohde W. Structure of the Hordeum vulgare gene encoding dihydroflavonol 4-reductase and molecular analysis of ant18 mutants blocked in flavonoid synthesis. Mol. Gen. Genet. 230:1991;49-59.
18. 0 ATP synthase from the sweet potato. J. Biol. Chem. 268:1993;17205-17210.
19. Nakai K., Inagaki Y., Nagata H., Miyazaki C., Iida S. Molecular characterization of the gene for Dihydroflavonol 4-reductase of Japonica Rice varieties. Plant Biotech. 15:1998;221-225.
20. Ohno, S., 1970. Evolution by Gene Duplication. Springer, New York.
21. Rothnie H.M. Plant mRNA 3′-end formation. Plant Mol. Biol. 32:1996;43-61.
22. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425.
23. Sambrook, J., Fritsch, E.F., Maniatis, T., 1989. Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
24. Schwarz-Sommer Z., Shepherd N., Tacke E., Gierl A., Rohde W., Heclercq L., Mattes M., Berndtgen R., Peterson P.A., Saedler H. Influence of transposable elements on the structure and function of the A1 gene of Zea mays. EMBO J. 6:1987;287-294.
25. Shirley B.W., Hanley S., Goodman H.M. Effects of ionizing radiation on a plant genome: analysis of two Arabidopsis transparent testa mutations. Plant Cell. 4:1992;333-347.
26. Sparvoli F., Martin C., Scienza A., Gavazzi G., Tonelli C. Cloning and molecular analysis of structural genes involved in flavonoid and stilbene biosynthesis in grape (Vitis vinifera L.). Plant Mol. Biol. 24:1994;743-755.
27. Tanaka Y., Fukui Y., Fukuchi-Mizutani M., Holton T.A., Higgins E., Kusumi T. Molecular cloning and characterization of Rosa hybrida dihydroflavonol 4-reductase gene. Plant Cell Physiol. 36:1995;1023-1031.
28. Tiffin P., Miller R.E., Rausher M.D. Control of expression patterns of anthocyanin structural genes by two loci in the common morning glory. Genes Genet. Syst. 73:1998;105-110.
29. Todd J.J., Vodkin L.O. Duplications that suppress and deletions that restore expression from a chalcone synthase multigene family. Plant Cell. 8:1996;687-699.
30. Wessler S.R., Bureau T.E., White S.E. LTR-retrotransposons and MITEs: important players in evolution of plant genomes. Curr. Opin. Genet. Dev. 5:1995;814-821.