Non coding extremities of the seven influenza virus type C vRNA segments: Effect on transcription and replication by the type C and type a polymerase complexes

Virology Journal

Volumn 5, Issue , 2008, Pages

  Crescenzo Chaigne, Bernadette ^a   Barbezange, Cyril ^a,b   Van Der Werf, Sylvie ^a  

^a INSTITUT PASTEUR   (France)

^b Healthy Pigs Production and Experimentation Section   (France)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC RNA; RNA POLYMERASE; UNTRANSLATED RNA; VIRUS RNA; NUCLEOPROTEIN; RNA DIRECTED RNA POLYMERASE; VIRUS PROTEIN;

ARTICLE; GENE ACTIVITY; GENE SEQUENCE; INFLUENZA VIRUS A; INFLUENZA VIRUS B; INFLUENZA VIRUS C; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; REPORTER GENE; VIRUS REPLICATION; VIRUS TRANSCRIPTION; DNA REPLICATION; DNA TEMPLATE; ENZYMOLOGY; GENETIC TRANSCRIPTION; GENETICS; METABOLISM; MOLECULAR GENETICS; UNTRANSLATED REGION;

CERCOPITHECINE HERPESVIRUS 1; GAMMARETROVIRUS; INFLUENZA C VIRUS; ORTHOMYXOVIRIDAE;

BASE SEQUENCE; DNA REPLICATION; INFLUENZAVIRUS C; MOLECULAR SEQUENCE DATA; NUCLEOPROTEINS; RNA REPLICASE; RNA, VIRAL; TEMPLATES, GENETIC; TRANSCRIPTION, GENETIC; UNTRANSLATED REGIONS; VIRAL PROTEINS;

EID: 57049124888     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-5-132     Document Type: Article

References (47)

1. Mutations in the nonconserved noncoding sequences of the influenza A virus segments affect viral vRNA formation. M Bergmann T Muster, Virus Res 1996 44 23 31 10.1016/0168-1702(96)01335-4 8873410
2. Nonconserved nucleotides at the 3' and 5' ends of an influenza A virus RNA play an important role in viral RNA replication. H Zheng P Palese A Garcia-Sastre, Virology 1996 217 242 251 10.1006/viro.1996.0111 8599209
3. Orthomyxoviridae: The viruses and their replication. P Palese ML Shaw, Fields virology Philadelphia: Lippincott Williams & Wilkins, Knipe DM, Howley PM, 2007 1647 1689
4. The 3' and 5'-terminal sequences of influenza A, B and C virus RNA segments are highly conserved and show partial inverted complementarity. U Desselberger VR Racaniello JJ Zazra P Palese, Gene 1980 8 315 328 10.1016/0378-1119(80)90007-4 7358274
5. 5' and 3' terminal nucleotide sequences of the RNA genome segments of influenza virus. JS Robertson, Nucleic Acids Res 1979 6 3745 3757 493121 10.1093/nar/6.12.3745
6. Segment-specific and common nucleotide sequences in the noncoding regions of influenza B virus genome RNAs. MY Stoeckle MW Shaw PW Choppin, Proc Natl Acad Sci USA 1987 84 2703 2707 3472232 10.1073/pnas.84.9.2703
7. Amplification, expression, and packaging of a foreign gene by influenza virus. W Luytjes M Krystal M Enami JD Parvin P Palese, Cell 1989 59 1107 1113 10.1016/0092-8674(89)90766-6 2598262
8. Mutational analysis of the RNA-fork model of the influenza A virus vRNA promoter in vivo. HJ Kim E Fodor GG Brownlee BL Seong, J Gen Virol 1997 78 Pt 2 353 357 9018057
9. Mutational analysis of the promoter required for influenza virus virion RNA synthesis. X Li P Palese, J Virol 1992 66 4331 4338 1602547
10. Recombinant influenza virus polymerase: requirement of both 5' and 3' viral ends for endonuclease activity. M Hagen TD Chung JA Butcher M Krystal, J Virol 1994 68 1509 1515 8107213
11. Differential effect of nucleotide substitutions in the 3' arm of the influenza A virus vRNA promoter on transcription/replication by avian and human polymerase complexes is related to the nature of PB2 amino acid 627. B Crescenzo-Chaigne S van der Werf N Naffakh, Virology 2002 303 240 252 10.1006/viro.2002.1637 12490387
12. The influenza virus panhandle is involved in the initiation of transcription. E Fodor DC Pritlove GG Brownlee, J Virol 1994 68 4092 4096 8189550
13. Characterization of the RNA-fork model of virion RNA in the initiation of transcription in influenza A virus. E Fodor DC Pritlove GG Brownlee, J Virol 1995 69 4012 4019 7769659
14. Nucleotides at the extremities of the viral RNA of influenza C virus are involved in type-specific interactions with the polymerase complex. B Crescenzo-Chaigne S van der Werf, J Gen Virol 2001 82 1075 1083 11297682
15. Mutational analysis of the influenza virus cRNA promoter and identification of nucleotides critical for replication. M Crow T Deng M Addley GG Brownlee, J Virol 2004 78 6263 6270 15163719 10.1128/JVI.78.12.6263-6270.2004
16. Promoter elements in the influenza vRNA terminal structure. R Flick G Neumann E Hoffmann E Neumeier G Hobom, RNA 1996 2 1046 1057 8849780
17. A hairpin loop at the 5' end of influenza A virus virion RNA is required for synthesis of poly(A)+ mRNA in vitro. DC Pritlove LL Poon LJ Devenish MB Leahy GG Brownlee, J Virol 1999 73 2109 2114 9971793
18. 3D structure of the influenza virus polymerase complex: localization of subunit domains. E Area J Martin-Benito P Gastaminza E Torreira JM Valpuesta JL Carrascosa J Ortin, Proc Natl Acad Sci USA 2004 101 308 313 14691253 10.1073/pnas.0307127101
19. Orthomyxovirus replication, transcription, and polyadenylation. G Neumann GG Brownlee E Fodor Y Kawaoka, Curr Top Microbiol Immunol 2004 283 121 143 15298169
20. Comparative analysis of the ability of the polymerase complexes of influenza viruses type A, B and C to assemble into functional RNPs that allow expression and replication of heterotypic model RNA templates in vivo. B Crescenzo-Chaigne N Naffakh S van der Werf, Virology 1999 265 342 353 10.1006/viro.1999.0059 10600605
21. In vivo reconstitution of active Thogoto virus polymerase: assays for the compatibility with other orthomyxovirus core proteins and template RNAs. F Weber E Jambrina S Gonzalez JT Dessens M Leahy G Kochs A Portela PA Nuttall O Haller J Ortin T Zurcher, Virus Res 1998 58 13 20 10.1016/S0168-1702(98)00096-3 9879758
22. Rescue of influenza C virus from recombinant DNA. B Crescenzo-Chaigne S van der Werf, J Virol 2007 81 11282 11289 17686850 10.1128/JVI.00910-07
23. A plasmid-based reverse genetics system for influenza A virus. S Pleschka R Jaskunas OG Engelhardt T Zurcher P Palese A Garcia-Sastre, J Virol 1996 70 4188 4192 8648766
24. Use of influenza C virus glycoprotein HEF for generation of vesicular stomatitis virus pseudotypes. A Hanika B Larisch E Steinmann C Schwegmann-Wessels G Herrler G Zimmer, J Gen Virol 2005 86 1455 1465 10.1099/vir.0.80788-0 15831958
25. 3'-terminal sequences of influenza C virion RNA. CM Clerx-van Haaster H Meier-Ewert, Arch Virol 1984 80 239 246 10.1007/BF01310664 6721680
26. A Mutation on Influenza C Virus M1 Protein Affects Virion Morphology by altering the Membrane Affinity of the Protein. Y Muraki T Murata E Takashita Y Matsuzaki K Sugawara S Hongo, J Virol 2007 17537859
27. The position 4 nucleotide at the 3' end of the influenza virus neuraminidase vRNA is involved in temporal regulation of transcription and replication of neuraminidase RNAs and affects the repertoire of influenza virus surface antigens. KH Lee BL Seong, J Gen Virol 1998 79 1923 1934 9714240
28. Structural features in eukaryotic mRNAs that modulate the initiation of translation. M Kozak, J Biol Chem 1991 266 19867 19870 1939050
29. Biological significance of the U residue at the -3 position of the mRNA sequences of influenza A viral segments PB1 and NA. Y Maeda H Goto T Horimoto A Takada Y Kawaoka, Virus Res 2004 100 153 157 10.1016/j.virusres.2003.11.013 15019233
30. Characterization of the polyadenylation signal of influenza virus RNA. X Li P Palese, J Virol 1994 68 1245 1249 7507179
31. The 5' ends of Thogoto virus (Orthomyxoviridae) mRNAs are homogeneous in both length and sequence. C Albo J Martin A Portela, J Virol 1996 70 9013 9017 8971034
32. Increased amounts of the influenza virus nucleoprotein do not promote higher levels of viral genome replication. AE Mullin RM Dalton MJ Amorim D Elton P Digard, J Gen Virol 2004 85 3689 3698 10.1099/vir.0.80518-0 15557242
33. The influenza virus nucleoprotein: a multifunctional RNA-binding protein pivotal to virus replication. A Portela P Digard, J Gen Virol 2002 83 723 734 11907320
34. Oligomerization of the influenza virus nucleoprotein: identification of positive and negative sequence elements. D Elton E Medcalf K Bishop P Digard, Virology 1999 260 190 200 10.1006/viro.1999.9818 10405371
35. Influenza virus nucleoprotein interacts with influenza virus polymerase proteins. SK Biswas PL Boutz DP Nayak, J Virol 1998 72 5493 5501 9621005
36. Functional domains of the influenza A virus PB2 protein: identification of NP- and PB1-binding sites. E Poole D Elton L Medcalf P Digard, Virology 2004 321 120 133 10.1016/j.virol.2003.12.022 15033571
37. The generation of recombinant influenza A viruses expressing a PB2 fusion protein requires the conservation of a packaging signal overlapping the coding and noncoding regions at the 5' end of the PB2 segment. E Dos Santos Afonso N Escriou I Leclercq S van der Werf N Naffakh, Virology 2005 341 34 46 10.1016/j.virol.2005.06.040 16084555
38. Importance of both the coding and the segment-specific noncoding regions of the influenza A virus NS segment for its efficient incorporation into virions. K Fujii Y Fujii T Noda Y Muramoto T Watanabe A Takada H Goto T Horimoto Y Kawaoka, J Virol 2005 79 3766 3774 15731270 10.1128/JVI.79.6.3766-3774.2005
39. Selective incorporation of influenza virus RNA segments into virions. Y Fujii H Goto T Watanabe T Yoshida Y Kawaoka, Proc Natl Acad Sci USA 2003 100 2002 2007 12574509 10.1073/pnas.0437772100
40. Mutational analyses of packaging signals in the influenza viral PA, PB1, and PB2 genomic RNA segments. Y Liang T Huang H Ly TG Parslow Y Liang, J Virol 2008 82 1 229 236 17959657 10.1128/JVI.01541-07
41. Specific residues of the influenza A virus hemagglutinin viral RNA are important for efficient packaging into budding virions. GA Marsh R Hatami P Palese, J Virol 2007 81 9727 9736 17634232 10.1128/JVI.01144-07
42. Hierarchy among viral RNA (vRNA) segments in their role in vRNA incorporation into influenza A virions. Y Muramoto A Takada K Fujii T Noda K Iwatsuki-Horimoto S Watanabe T Horimoto H Kida Y Kawaoka, J Virol 2006 80 2318 2325 16474138 10.1128/JVI.80.5.2318-2325.2006
43. Exploitation of nucleic acid packaging signals to generate a novel influenza virus-based vector stably expressing two foreign genes. T Watanabe S Watanabe T Noda Y Fujii Y Kawaoka, J Virol 2003 77 10575 10583 12970442 10.1128/JVI.77.19.10575-10583.2003
44. Functional analysis of the noncoding regions of the Uukuniemi virus (Bunyaviridae) RNA segments. K Flick A Katz A Overby H Feldmann RF Pettersson R Flick, J Virol 2004 78 11726 11738 15479814 10.1128/JVI.78.21.11726-11738.2004
45. Influenza B viruses with site-specific mutations introduced into the HA gene. WS Barclay P Palese, J Virol 1995 69 1275 1279 7815505
46. The three subunits of the polymerase and the nucleoprotein of influenza B virus are the minimum set of viral proteins required for expression of a model RNA template. E Jambrina J Barcena O Uez A Portela, Virology 1997 235 209 217 10.1006/viro.1997.8682 9281500
47. Mutational analysis of influenza B virus RNA transcription in vitro. YS Lee BL Seong, J Virol 1996 70 1232 1236 8551586