Phylogeny of Dioscorea sect. Stenophora based on chloroplast matK, rbcL and trnL-F sequences

Journal of Systematics and Evolution

Volumn 46, Issue 3, 2008, Pages 315-321

  Gao, Xing ^a   Zhu, Yu Ping ^b   Wu, Bao Cheng ^a   Zhao, Ya Mei ^a   Chen, Jian Qun ^b   Hang, Yue Yu ^a  

^a INSTITUTE OF BOTANY   (China)

^b NANJING UNIVERSITY   (China)

Author keywords

Chloroplast DNA sequence; Dioscorea sect. Stenophora; Maximum likelihood; Maximum parsimony; Molecular phylogeny

Indexed keywords

DIOSCOREA; DIOSCOREA ALATA; DIOSCOREA COLLETTII; DIOSCOREA COLLETTII VAR. HYPOGLAUCA; DIOSCOREA MEMBRANACEA; DIOSCOREA NIPPONICA; DIOSCOREA PRAZERI; DIOSCOREA ROCKII; DIOSCOREA SINOPARVIFLORA; DIOSCOREA ZINGIBERENSIS;

EID: 56849108023     PISSN: 16744918     EISSN: 17596831     Source Type: Journal    
DOI: 10.3724/SP.J.1002.2008.08007     Document Type: Article

References (27)

1. Burkill IH. 1960. The organography and the evolution of Dioscoreaceae, the family of the Yams. Botanical Journal of the Linnean Society 56: 319-412.
2. Chase MW, Fay MF, Devey DS, Maurin O, Ronsted N, Davies TJ, Pillon Y, Petersen G, Seberg O, Tamura MN, Asmussen CB, Hilu K, Borsch T, Davis JI, Stvenson DW, Pires JC, Givnish TJ, Sytsma KJ, McPherson MA, Graham SW, Rai HS. 2006. Multigene analyses of monocot relationships: a summary. Aliso 22: 63-75.
3. Chin H-C (Chinesse Source), Chang M-C (Chinesse Source), Ling P-P (Chinesse Source), Ting C-T (Chinesse Source), Dou F-P (Chinesse Source). 1985. A cytotaxonomic study on Chinese Dioscorea L.-The chromosome numbers and their relation to the origin and evolution of the genus. Acta Phytotaxonomica Sinica (Chinesse Source) 23: 11-18.
4. Coursey DG 1967. Yams: An account of the nature, origins, cultivation and utilisation of the useful members of the Dioscoreaceae. Tropical Agricultural Series. London: Longmans, Green and Co. Ltd. 230-230.
5. Dahlgren G 1989. An undated angiosperm classification. Botanical Journal of the Linnean Society 100: 197-203.
6. Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf material. Phytochemical Bulletin 19: 11-15.
7. Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
8. Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52: 696-704.
9. Hang Y-Y (Chinesse Source). 2007. Origin, identification and quality evaluation study on Chinese traditional drug Bixie. Ph.D. Dissertation. Nanjing: China Pharmaceutical University.
10. Kawabe A, Miyashita NT, Terauchi R. 1997. Phylogenetic relationship among the section Stenophora in the genus Dioscorea based on the analysis of nucleotide sequence variation in the phosphoglucose isomerase (Pgi) locus. Genes and Genetic Systems 72: 253-262.
11. Knuth R. 1924. Dioscoreaceae. In: Engler A ed. Das pflanzenreich. Leipzig: Verlag von Wilhelm Engelmann. 4: 253-253.
12. Miyamoto MM, Fitch MW. 1995. Testing species phylogenies and phylogenetic methods with congruence. Systematic Biology 44: 64-76.
13. Pei C (Chinesse Source), Ting C-T (Chinesse Source), Chin H-C (Chinesse Source), Su P (Chinesse Source), Tang S-Y (Chinesse Source). Chang H-C (Chinesse Source). 1979. A preliminary systematic study of Dioscorea L. sect. Stenophora Uline. Acta Phytotaxonomica Sinica (Chinesse Source) 17 (3): 61-72.
14. Posada D, Crandall KA. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
15. Prain D, Burkill IH. 1908. Dioscorearum novarum descriptions quaedam. Journal of the Asiatic Society of Bengal 4: 454-454.
16. Sang T. 2002. Utility of low-copy nuclear gene sequences in plant phylogenetics. Critical Reviews in Biochemistry and Molecular Biology 37: 121-147.
17. Schols P, Furness CA, Wilkin P, Smets E, Cielen V, Huysmans S. 2003. Pollen morphology of Dioscorea (Dioscoreaceae) and its relation to systematics. Botanical Journal of the Linnean Society 143: 375-390.
18. Su P (Chinesse Source). 1987. Pollen morphology of Dioscorea in China. Acta Phytotaxonomica Sinica (Chinesse Source) 25: 357-365.
19. Swofford DL. 2002. PAUP*. Phylogenetic analysis using parsimony (* and Other Methods). Version 4. Sunderland MA: Sinauer Associates.
20. Taberlet PT, Gielly L, Patou G, Bouvet J. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1109.
21. The Research Group of Dioscorea, Kiangsu Institute of Botany (Chinesse Source). 1976. Studies on Chinese Dioscorea sect. Stenophora Pr. et Burk. and their chromosome numbers. Acta Phytotaxonomica Sinica (Chinesse Source) 14 (1): 65-72.
22. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG 1997. The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25: 4876-4882.
23. Ting C-T (Chinesse Source), Michael GG 2000. Dioscorea Linnaeus. In: Wu Z-Y, Raven PH eds. Flora of China. Beijing: Science Press; St. Louis: Missouri Botanical Garden Press. 24: 276-296.
24. Wan J-R (Chinesse Source), Ding Z-Z (Chinesse Source), Qin H-Z (Chinesse Source). 1994. A phytogeographical study on the family Dioscoreaceae. Acta Botanica Boreale-Occidentalia Sinica (Chinesse Source) 14: 128-135.
25. Wendel JF, Doyle JJ. 1998. Phylogenetic incongruence: window into genomes history and molecular evolution. In: Soltis DE, Soltis PS, Doyle JJ eds. Molecular systematics of plants.II. DNA sequencing. Boston: Kluwer Academic Publications.
26. Wilkin P, Schols P, Chase MW, Chayamarit K, Furness CA, Huysmans S, Rakotonasolo F, Smets E, Thapyai C. 2005. A plastid gene phylogeny of the yam genus, Dioscorea: roots, fruits and Madagascar. Systematic Botany 30: 736-749.
27. Wu Z-Y (Chinesse Source), Lu A-M (Chinesse Source), Tang Y-C (Chinesse Source), Chen Z-D (Chinesse Source), Li D-Z (Chinesse Source). 2003. The families and genera of angiosperms in China-A comprehensive analysis. Beijing: Science Press. 212-217.