-
1
-
-
33645747929
-
A constraint-based approach to fast and exact structure prediction in three-dimensional protein models
-
Backofen, R., Will, S.: A constraint-based approach to fast and exact structure prediction in three-dimensional protein models. Constraints 11(1), 5-30 (2006)
-
(2006)
Constraints
, vol.11
, Issue.1
, pp. 5-30
-
-
Backofen, R.1
Will, S.2
-
2
-
-
56649088317
-
Structural classification of al-phabetabeta and betabetaalpha supersecondary structure units in proteins
-
Boutonnet, N.S., Kajava, A.V., Rooman, M.J.: Structural classification of al-phabetabeta and betabetaalpha supersecondary structure units in proteins. Proteins 80(2), 198-212 (1998)
-
(1998)
Proteins
, vol.80
, Issue.2
, pp. 198-212
-
-
Boutonnet, N.S.1
Kajava, A.V.2
Rooman, M.J.3
-
3
-
-
0022706389
-
The relation between the divergence of sequence and structure in proteins
-
Chothia, C., Lesk, A.M.: The relation between the divergence of sequence and structure in proteins. The EMBO Journal 5, 823 826 (1986)
-
(1986)
The EMBO Journal
, vol.5
, pp. 823-826
-
-
Chothia, C.1
Lesk, A.M.2
-
4
-
-
0035847003
-
A novel method for sampling alpha-helical protein backbones
-
Fain. B., Levitt. M.: A novel method for sampling alpha-helical protein backbones. Journal of Molecular Biology 305, 191-201 (2001)
-
(2001)
Journal of Molecular Biology
, vol.305
, pp. 191-201
-
-
Fain, B.1
Levitt, M.2
-
5
-
-
14644400399
-
An amino acid has two sides: A new 2D measure provides a different view of solvent exposure
-
Hamelryck, T.: An amino acid has two sides: a new 2D measure provides a different view of solvent exposure. Proteins 59(1), 38-48 (2005)
-
(2005)
Proteins
, vol.59
, Issue.1
, pp. 38-48
-
-
Hamelryck, T.1
-
6
-
-
33749368323
-
Sampling realistic protein conformations using local structural bias
-
Hamelryck, T., Kent, J.T., Krogh, A.: Sampling realistic protein conformations using local structural bias. PLoS Computational Biology 2(9), 1121-1133 (2006)
-
(2006)
PLoS Computational Biology
, vol.2
, Issue.9
, pp. 1121-1133
-
-
Hamelryck, T.1
Kent, J.T.2
Krogh, A.3
-
7
-
-
19544367146
-
Recoverable one-dimensional encoding of three-dimensional protein structures
-
Kinjo, A.R., Nishikawa, K.: Recoverable one-dimensional encoding of three-dimensional protein structures. Bioinformatics 21(10), 2167-2170 (2005)
-
(2005)
Bioinformatics
, vol.21
, Issue.10
, pp. 2167-2170
-
-
Kinjo, A.R.1
Nishikawa, K.2
-
8
-
-
0037343306
-
Protein decoy assembly using short fragments under geometric constraints
-
Kolodny, R., Levitt, M.: Protein decoy assembly using short fragments under geometric constraints. Biopolymers 68(3), 278-285 (2003)
-
(2003)
Biopolymers
, vol.68
, Issue.3
, pp. 278-285
-
-
Kolodny, R.1
Levitt, M.2
-
9
-
-
36449005845
-
A deterministic global optimization approach for molecular structure determination
-
Maranas, C.D., Floudas, C.A.: A deterministic global optimization approach for molecular structure determination. J. Chem. Phys. 100, 1247-1261 (1994)
-
(1994)
J. Chem. Phys
, vol.100
, pp. 1247-1261
-
-
Maranas, C.D.1
Floudas, C.A.2
-
10
-
-
0034044314
-
The PSIPRED protein structure prediction server
-
McGuffin, L.J., Bryson, K., Jones, D.T.: The PSIPRED protein structure prediction server. Bioinrormatics 16, 404-405 (2000)
-
(2000)
Bioinrormatics
, vol.16
, pp. 404-405
-
-
McGuffin, L.J.1
Bryson, K.2
Jones, D.T.3
-
11
-
-
13244275057
-
Constraint logic programming approach to protein structure prediction
-
Palu, A.D., Dovier, A., Fogolari, F.: Constraint logic programming approach to protein structure prediction. BMC Bioinformatics 5(186) (2004)
-
(2004)
BMC Bioinformatics
, vol.5
, Issue.186
-
-
Palu, A.D.1
Dovier, A.2
Fogolari, F.3
-
13
-
-
56649122077
-
-
Paluszewski, M., Winter, P.: EBBA: Efficient branch and bound algorithm for protein decoy generation, Department of Computer Science, Univ. of Copenhagen, 08(08) (2008)
-
Paluszewski, M., Winter, P.: EBBA: Efficient branch and bound algorithm for protein decoy generation, Department of Computer Science, Univ. of Copenhagen, vol. 08(08) (2008)
-
-
-
-
14
-
-
0036568293
-
Prediction of coordination number and relative solvent accessibility in proteins
-
Pollastri, G., Baldi, P., Fariselli, P., Casadio, R.: Prediction of coordination number and relative solvent accessibility in proteins. Proteins 47(2), 142-153 (2002)
-
(2002)
Proteins
, vol.47
, Issue.2
, pp. 142-153
-
-
Pollastri, G.1
Baldi, P.2
Fariselli, P.3
Casadio, R.4
-
15
-
-
0031585984
-
Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions
-
Simons, K.T., Kooperberg, C., Huang, E., Baker, D.: Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions. J. Mol. Biol. 268(1), 209-225 (1997)
-
(1997)
J. Mol. Biol
, vol.268
, Issue.1
, pp. 209-225
-
-
Simons, K.T.1
Kooperberg, C.2
Huang, E.3
Baker, D.4
-
16
-
-
0031575423
-
MONSSTER: A method for folding globular proteins with a small number of distance restraints
-
Skolnick, J., Kolinski, A., Ortiz, A.R.: MONSSTER: A method for folding globular proteins with a small number of distance restraints. J. Mol. Biol. 265, 217-241 (1997)
-
(1997)
J. Mol. Biol
, vol.265
, pp. 217-241
-
-
Skolnick, J.1
Kolinski, A.2
Ortiz, A.R.3
-
17
-
-
0033613919
-
-
Standley, D.M., Eyrich, V.A., Felts, A.K., Friesner, R.A., McDermott, A.E.: A branch and bound algorithm for protein structure refinement from sparse nmr data sets. J. Mol. Biol. 285, 1961 1710 (1999)
-
Standley, D.M., Eyrich, V.A., Felts, A.K., Friesner, R.A., McDermott, A.E.: A branch and bound algorithm for protein structure refinement from sparse nmr data sets. J. Mol. Biol. 285, 1961 1710 (1999)
-
-
-
-
18
-
-
0030461645
-
Patterns and conformations of commonly occurring supersecondary structures (basic motifs) in protein data bank
-
Sun, Z., Jiang, B.: Patterns and conformations of commonly occurring supersecondary structures (basic motifs) in protein data bank. J. Protein Chem. 15(7), 675-690 (1996)
-
(1996)
J. Protein Chem
, vol.15
, Issue.7
, pp. 675-690
-
-
Sun, Z.1
Jiang, B.2
-
19
-
-
56649089850
-
-
Vilhjalmsson, B., Harnelryck, T.: Predicting a New Type of Solvent Exposure. In: ECCB, Computational Biology Madrid 2005, P-C35, Poster (2005)
-
Vilhjalmsson, B., Harnelryck, T.: Predicting a New Type of Solvent Exposure. In: ECCB, Computational Biology Madrid 2005, P-C35, Poster (2005)
-
-
-
|