-
1
-
-
0032616683
-
Identification of genetic networks from a small number of gene expression patterns under the Boolean network model
-
World Scientific, Singapore
-
Akutsu, T., Miyano, S., Kuhara, S.: Identification of genetic networks from a small number of gene expression patterns under the Boolean network model. In: Proc. 4th Pacific Symp. on Biocomputing (PSB 1999), pp. 17-28. World Scientific, Singapore (1999)
-
(1999)
Proc. 4th Pacific Symp. on Biocomputing (PSB
, pp. 17-28
-
-
Akutsu, T.1
Miyano, S.2
Kuhara, S.3
-
2
-
-
2942606066
-
Structure and evolution of transcriptional regulatory networks
-
Babu, M.M., Luscombe, N.M., Aravind, L., Gerstein, M., Teichmann, S.A.: Structure and evolution of transcriptional regulatory networks. Curr. Opinion in Struct. Bio. 14(3), 283-291 (2004)
-
(2004)
Curr. Opinion in Struct. Bio
, vol.14
, Issue.3
, pp. 283-291
-
-
Babu, M.M.1
Luscombe, N.M.2
Aravind, L.3
Gerstein, M.4
Teichmann, S.A.5
-
3
-
-
0037440734
-
Evolution of transcription factors and the gene regulatory network in Escherichia coli
-
Babu, M.M., Teichmann, S.A.: Evolution of transcription factors and the gene regulatory network in Escherichia coli. Nucleic Acids Res. 31(4), 1234-1244 (2003)
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.4
, pp. 1234-1244
-
-
Babu, M.M.1
Teichmann, S.A.2
-
4
-
-
33646113855
-
Evolutionary dynamics of prokaryotic transcriptional regulatory networks
-
Babu, M.M., Teichmann, S.A., Aravind, L.: Evolutionary dynamics of prokaryotic transcriptional regulatory networks. J. Mol. Bio. 358(2), 614-633 (2006)
-
(2006)
J. Mol. Bio
, vol.358
, Issue.2
, pp. 614-633
-
-
Babu, M.M.1
Teichmann, S.A.2
Aravind, L.3
-
5
-
-
8844277626
-
Analyzing time series gene expression data
-
Bar-Joseph, Z.: Analyzing time series gene expression data. Bioinformatics 20(16), 2493-2503 (2004)
-
(2004)
Bioinformatics
, vol.20
, Issue.16
, pp. 2493-2503
-
-
Bar-Joseph, Z.1
-
6
-
-
10944257452
-
Improving gene network inference by comparing expression time-series across species, developmental stages or tissues
-
Bourque, G., Sankoff, D.: Improving gene network inference by comparing expression time-series across species, developmental stages or tissues. J. Bioinform. Comput. Biol. 2(4), 765-783 (2004)
-
(2004)
J. Bioinform. Comput. Biol
, vol.2
, Issue.4
, pp. 765-783
-
-
Bourque, G.1
Sankoff, D.2
-
7
-
-
0032611513
-
Modeling gene expression with differential equations
-
World Scientific, Singapore
-
Chen, T., He, H.L., Church, G.M.: Modeling gene expression with differential equations. In: Proc. 4th Pacific Symp. on Biocomputing (PSB 1999), pp. 29-40. World Scientific, Singapore (1999)
-
(1999)
Proc. 4th Pacific Symp. on Biocomputing (PSB
, pp. 29-40
-
-
Chen, T.1
He, H.L.2
Church, G.M.3
-
8
-
-
3042661669
-
Extended dependency analysis of large systems. Int'l
-
Conant, R.C.: Extended dependency analysis of large systems. Int'l J. General Systems 14(2), 97-141 (1988)
-
(1988)
J. General Systems
, vol.14
, Issue.2
, pp. 97-141
-
-
Conant, R.C.1
-
9
-
-
0842288337
-
Inferring cellular networks using probabilistic graph models
-
Friedman, N.: Inferring cellular networks using probabilistic graph models. Science 303(5659), 799-805 (2004)
-
(2004)
Science
, vol.303
, Issue.5659
, pp. 799-805
-
-
Friedman, N.1
-
10
-
-
0033707946
-
Using Bayesian networks to analyze expression data
-
Friedman, N., Linial, M., Nachman, I., Pe'er, D.: Using Bayesian networks to analyze expression data. J. Comput. Bio. 7(3-4), 601-620 (2000)
-
(2000)
J. Comput. Bio
, vol.7
, Issue.3-4
, pp. 601-620
-
-
Friedman, N.1
Linial, M.2
Nachman, I.3
Pe'er, D.4
-
11
-
-
0000854197
-
Learning the structure of dynamic probabilistic networks
-
Intell. UAI
-
Friedman, N., Murphy, K.P., Russell, S.: Learning the structure of dynamic probabilistic networks. In: Proc. 14th Conf. on Uncertainty in Art. Intell. UAI 1998, pp. 139-147 (1998)
-
(1998)
Proc. 14th Conf. on Uncertainty in Art
, pp. 139-147
-
-
Friedman, N.1
Murphy, K.P.2
Russell, S.3
-
12
-
-
11944260381
-
Approaches for assessing phylogenetic accuracy
-
Hillis, D.M.: Approaches for assessing phylogenetic accuracy. Syst. Bio. 44, 3-16 (1995)
-
(1995)
Syst. Bio
, vol.44
, pp. 3-16
-
-
Hillis, D.M.1
-
13
-
-
33644874819
-
From genomics to chemical genomics: New developments in KEGG
-
Kanehisa, M., Goto, S., Hattori, M., Aoki-Kinoshita, K.F., Itoh, M., Kawashima, S., Katayama, T., Araki, M., Hirakawa, M.: From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Res. 34, D354-D357 (2006)
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Kanehisa, M.1
Goto, S.2
Hattori, M.3
Aoki-Kinoshita, K.F.4
Itoh, M.5
Kawashima, S.6
Katayama, T.7
Araki, M.8
Hirakawa, M.9
-
14
-
-
0842309206
-
Inferring gene networks from time series microarray data using dynamic Bayesian networks
-
Kim, S.Y., Imoto, S., Miyano, S.: Inferring gene networks from time series microarray data using dynamic Bayesian networks. Briefings in Bioinformatics 4(3), 228-235 (2003)
-
(2003)
Briefings in Bioinformatics
, vol.4
, Issue.3
, pp. 228-235
-
-
Kim, S.Y.1
Imoto, S.2
Miyano, S.3
-
15
-
-
0031616241
-
REVEAL, a general reverse engineering algorithm for inference of genetic network architectures
-
World Scientific, Singapore
-
Liang, S., Fuhrman, S., Somogyi, R.: REVEAL, a general reverse engineering algorithm for inference of genetic network architectures. In: Proc. 3rd Pacific Symp. on Biocomputing (PSB 1998), pp. 18-29. World Scientific, Singapore (1998)
-
(1998)
Proc. 3rd Pacific Symp. on Biocomputing (PSB
, pp. 18-29
-
-
Liang, S.1
Fuhrman, S.2
Somogyi, R.3
-
16
-
-
21144447868
-
Reconstructing optimal phylogenetic trees: A challenge in experimental algorithmics
-
Fleischer, R, Moret, B.M.E, Schmidt, E.M, eds, Experimental Algorithmics, Springer, Heidelberg
-
Moret, B.M.E., Warnow, T.: Reconstructing optimal phylogenetic trees: A challenge in experimental algorithmics. In: Fleischer, R., Moret, B.M.E., Schmidt, E.M. (eds.) Experimental Algorithmics. LNCS, vol. 2547, pp. 163-180. Springer, Heidelberg (2002)
-
(2002)
LNCS
, vol.2547
, pp. 163-180
-
-
Moret, B.M.E.1
Warnow, T.2
-
17
-
-
56649097538
-
-
Murphy, K.P.: The Bayes net toolbox for MATLAB. Computing Sci. and Statistics 33, 331-351 (2001)
-
Murphy, K.P.: The Bayes net toolbox for MATLAB. Computing Sci. and Statistics 33, 331-351 (2001)
-
-
-
-
18
-
-
0034117082
-
A fast algorithm for joint reconstruction of ancestral amino acid sequences
-
Pupko, T., Pe'er, I., Shamir, R., Graur, D.: A fast algorithm for joint reconstruction of ancestral amino acid sequences. Mol. Bio. Evol. 17(6), 890-896 (2000)
-
(2000)
Mol. Bio. Evol
, vol.17
, Issue.6
, pp. 890-896
-
-
Pupko, T.1
Pe'er, I.2
Shamir, R.3
Graur, D.4
-
19
-
-
0036899286
-
From patterns to pathways: Gene expression data analysis comes of age
-
Slonim, D.K.: From patterns to pathways: gene expression data analysis comes of age. Nature Genetics 32, 502-508 (2002)
-
(2002)
Nature Genetics
, vol.32
, pp. 502-508
-
-
Slonim, D.K.1
-
20
-
-
2442537233
-
Gene regulatory network growth by duplication
-
Teichmann, S.A., Babu, M.M.: Gene regulatory network growth by duplication. Nature Genetics 36(5), 492-496 (2004)
-
(2004)
Nature Genetics
, vol.36
, Issue.5
, pp. 492-496
-
-
Teichmann, S.A.1
Babu, M.M.2
-
21
-
-
36448970861
-
Inferring transcriptional regulatory networks from high-throughput data
-
Wang. R., Wang, Y., Zhang, X., Chen, L.: Inferring transcriptional regulatory networks from high-throughput data. Bioinformatics 23(22), 3056-3064 (2007)
-
(2007)
Bioinformatics
, vol.23
, Issue.22
, pp. 3056-3064
-
-
Wang, R.1
Wang, Y.2
Zhang, X.3
Chen, L.4
-
22
-
-
10944233884
-
Inference of genetic regulatory networks from time series gene expression data
-
IEEE Press, Piscataway
-
Xu, R., Hu, X., Wunsch, D.C.: Inference of genetic regulatory networks from time series gene expression data. In: Proc. IEEE Int'l Joint Conf. on Neural Networks, vol. 2, pp. 1215-1220. IEEE Press, Piscataway (2004)
-
(2004)
Proc. IEEE Int'l Joint Conf. on Neural Networks
, vol.2
, pp. 1215-1220
-
-
Xu, R.1
Hu, X.2
Wunsch, D.C.3
-
23
-
-
12344259602
-
Advances to Bayesian network inference for generating causal networks from observational biological data
-
Yu, J., Smith, V.A., Wang, P.P., Hartemink, A.J., Jarvis, E.D.: Advances to Bayesian network inference for generating causal networks from observational biological data. Bioinformatics 20(18), 3594-3603 (2004)
-
(2004)
Bioinformatics
, vol.20
, Issue.18
, pp. 3594-3603
-
-
Yu, J.1
Smith, V.A.2
Wang, P.P.3
Hartemink, A.J.4
Jarvis, E.D.5
-
24
-
-
33748654580
-
Inferring gene regulatory networks from time series data using the minimum length description principle
-
Zhao, W., Serpedin, E., Dougherty, E.R.: Inferring gene regulatory networks from time series data using the minimum length description principle. Bioinformatics 22(17), 2129-2135 (2006)
-
(2006)
Bioinformatics
, vol.22
, Issue.17
, pp. 2129-2135
-
-
Zhao, W.1
Serpedin, E.2
Dougherty, E.R.3
|