-
1
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann RI, Ludwig W, Schleifer K-H. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev. 59:143-169.
-
(1995)
Microbiol Rev
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.-H.3
-
2
-
-
0002154022
-
A new method for non-parametric multivariate analysis of variance
-
Anderson MJ. 2001. A new method for non-parametric multivariate analysis of variance. Aust Ecol. 26:32-46.
-
(2001)
Aust Ecol
, vol.26
, pp. 32-46
-
-
Anderson, M.J.1
-
4
-
-
0042329887
-
Generalised discriminant analysis based on distances
-
Anderson MJ, Robinson J. 2003. Generalised discriminant analysis based on distances. Aust NZ J Stat. 45:301-318.
-
(2003)
Aust NZ J Stat
, vol.45
, pp. 301-318
-
-
Anderson, M.J.1
Robinson, J.2
-
5
-
-
0025835296
-
Fast and sensitive silver staining of DNA in polyacrylamide gels
-
Bassam BJ, Caetano-Anollés G, Gresshoff PM. 1991. Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal Biochem. 196:80-83.
-
(1991)
Anal Biochem
, vol.196
, pp. 80-83
-
-
Bassam, B.J.1
Caetano-Anollés, G.2
Gresshoff, P.M.3
-
7
-
-
33745908594
-
Effect of total mixed ration composition on fermentation and efficiency of ruminal microbial crude protein synthesis in vitro
-
Boguhn J, Kluth H, Rodehutscord M. 2006a. Effect of total mixed ration composition on fermentation and efficiency of ruminal microbial crude protein synthesis in vitro. J Dairy Sci. 89:1580-1591.
-
(2006)
J Dairy Sci
, vol.89
, pp. 1580-1591
-
-
Boguhn, J.1
Kluth, H.2
Rodehutscord, M.3
-
8
-
-
33745910561
-
Effect of total mixed ration composition on amino acid profiles of different fractions of ruminal microbes in vitro
-
Boguhn J, Kluth H, Rodehutscord M. 2006b. Effect of total mixed ration composition on amino acid profiles of different fractions of ruminal microbes in vitro. J Dairy Sci. 89:1592-1603.
-
(2006)
J Dairy Sci
, vol.89
, pp. 1592-1603
-
-
Boguhn, J.1
Kluth, H.2
Rodehutscord, M.3
-
9
-
-
0019749952
-
Beiträge zur Quantifizierung der N-Umsetzungen in den Vormägen von Milchkühen 1. Mitteilung: Bestimmung des Mikrobenstickstoffs im Duodenalchymus mit Hilfe von 15N.
-
Brandt M, Rohr K. 1981. Beiträge zur Quantifizierung der N-Umsetzungen in den Vormägen von Milchkühen 1. Mitteilung: Bestimmung des Mikrobenstickstoffs im Duodenalchymus mit Hilfe von 15N. Z Tierphysiol Tierernährg Futtermittelkd. 46:39-48.
-
(1981)
Z Tierphysiol Tierernährg Futtermittelkd
, vol.46
, pp. 39-48
-
-
Brandt, M.1
Rohr, K.2
-
10
-
-
85010247737
-
Numbers and some predominant groups of bacteria in the rumen of cows fed different rations
-
Bryant MP, Burkey LA. 1953. Numbers and some predominant groups of bacteria in the rumen of cows fed different rations. J Dairy Sci. 36:218-224.
-
(1953)
J Dairy Sci
, vol.36
, pp. 218-224
-
-
Bryant, M.P.1
Burkey, L.A.2
-
11
-
-
34547736491
-
The rumen microbial ecosystem
-
Hobson PN, Stewart CS, editors, London: Blackie Academic and Professional, p
-
Cheng K-J, McAllister TA. 1997. The rumen microbial ecosystem. In: Hobson PN, Stewart CS, editors. Chapter 12, Compartmentation in the rumen. London: Blackie Academic and Professional, p. 492-521.
-
(1997)
Compartmentation in the rumen
, pp. 492-521
-
-
Cheng, K.-J.1
McAllister, T.A.2
-
12
-
-
0027804103
-
Non-parametric multivariate analyses of changes in community structure
-
Clarke KR. 1993. Non-parametric multivariate analyses of changes in community structure. Aust J Ecol. 18:117-143.
-
(1993)
Aust J Ecol
, vol.18
, pp. 117-143
-
-
Clarke, K.R.1
-
13
-
-
0000179967
-
Statistical design and analysis for a 'biological effects' study
-
Clarke KR, Green RH. 1988. Statistical design and analysis for a 'biological effects' study. Mar Ecol - Progress Series. 46:213-226.
-
(1988)
Mar Ecol - Progress Series
, vol.46
, pp. 213-226
-
-
Clarke, K.R.1
Green, R.H.2
-
14
-
-
0017759068
-
Design and development of a long-term rumen simulation technique (Rusitec)
-
Czerkawski JW, Breckenridge G. 1977. Design and development of a long-term rumen simulation technique (Rusitec). Brit J Nutr. 38:371-384.
-
(1977)
Brit J Nutr
, vol.38
, pp. 371-384
-
-
Czerkawski, J.W.1
Breckenridge, G.2
-
15
-
-
0018112582
-
Use of the Rumen Simulation Technique (Rusitec) to study the distribution of microbial matter in the solid and liquid phases of the reaction mixture; sequestration of micro-organisms
-
Czerkawski JW, Breckenridge G. 1978. Use of the Rumen Simulation Technique (Rusitec) to study the distribution of microbial matter in the solid and liquid phases of the reaction mixture; sequestration of micro-organisms. Proc Nutr Soc. 37:70A.
-
(1978)
Proc Nutr Soc
, vol.37
-
-
Czerkawski, J.W.1
Breckenridge, G.2
-
16
-
-
0002576977
-
Development of, and natural fluctuations in, rumen microbial populations
-
Hobson PN, Stewart CS, editors, London: Blackie Academic & Professional. p
-
Dehority BA, Orpin CG. 1997. Development of, and natural fluctuations in, rumen microbial populations. In: Hobson PN, Stewart CS, editors. The rumen microbial ecosystem. London: Blackie Academic & Professional. p. 196-245.
-
(1997)
The rumen microbial ecosystem
, pp. 196-245
-
-
Dehority, B.A.1
Orpin, C.G.2
-
17
-
-
21244446942
-
Microbial community analysis by PCR-single-strand conformation polymorphism (PCR-SSCP)
-
Kowalchuk GA, de Bruijn FJ, Head IM, Akkermans ADL, van Elsas JD, editors, Dordrecht: Kluwer Academic Publishers, p
-
Dohrmann AB, Tebbe CC. 2004. Microbial community analysis by PCR-single-strand conformation polymorphism (PCR-SSCP). In: Kowalchuk GA, de Bruijn FJ, Head IM, Akkermans ADL, van Elsas JD, editors. Molecular microbial ecology manual 1. Dordrecht: Kluwer Academic Publishers, p. 809-838.
-
(2004)
Molecular microbial ecology manual 1
, pp. 809-838
-
-
Dohrmann, A.B.1
Tebbe, C.C.2
-
18
-
-
0029032318
-
Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species
-
Farrelly V, Rainey FA, Stackebrandt E. 1995. Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl Environ Microbiol. 61:2798-2801.
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 2798-2801
-
-
Farrelly, V.1
Rainey, F.A.2
Stackebrandt, E.3
-
19
-
-
0021314270
-
Response of marine bacterioplankton to differential filtration and confinement
-
Ferguson RL, Buckley EN, Palumbo AV. 1984. Response of marine bacterioplankton to differential filtration and confinement. Appl Environ Microbiol. 47:49-55.
-
(1984)
Appl Environ Microbiol
, vol.47
, pp. 49-55
-
-
Ferguson, R.L.1
Buckley, E.N.2
Palumbo, A.V.3
-
20
-
-
33847138447
-
Characterisation and quantification of the microbial populations of the rumen
-
Sejrsen K, Hvelplund T, Nielsen MO, editors, Wageningen: Academic Publishers, p
-
Firkins JL, Yu Z. 2006. Characterisation and quantification of the microbial populations of the rumen. In: Sejrsen K, Hvelplund T, Nielsen MO, editors. Ruminant physiology, digestion, metabolism and impact of nutrition on gene expression, immunology and stress. Wageningen: Academic Publishers, p. 19-54.
-
(2006)
Ruminant physiology, digestion, metabolism and impact of nutrition on gene expression, immunology and stress
, pp. 19-54
-
-
Firkins, J.L.1
Yu, Z.2
-
21
-
-
0347571874
-
Comparison of microbiological and fermentation parameters obtained with an improved rumen in vitro technique with those obtained in vivo
-
Gizzi G, Zanchi R, Sciaraffia F. 1998. Comparison of microbiological and fermentation parameters obtained with an improved rumen in vitro technique with those obtained in vivo. Anim Feed Sci Technol. 73:291-305.
-
(1998)
Anim Feed Sci Technol
, vol.73
, pp. 291-305
-
-
Gizzi, G.1
Zanchi, R.2
Sciaraffia, F.3
-
22
-
-
2542508293
-
Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by ultivation and direct 16S rRNA gene sequence retrieval
-
Großkopf R, Janssen PH, Liesack W. 1998. Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by ultivation and direct 16S rRNA gene sequence retrieval. Appl Environ Microbiol. 64:960-969.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 960-969
-
-
Großkopf, R.1
Janssen, P.H.2
Liesack, W.3
-
23
-
-
34748886657
-
PAST: Paleontological statistics software package for education and data analysis
-
Hammer Ø, Harper DAT, Ryan PD. 2001, PAST: Paleontological statistics software package for education and data analysis. Palaeontol Electronica. 4:1-9.
-
(2001)
Palaeontol Electronica
, vol.4
, pp. 1-9
-
-
Hammer, Ø.1
Harper, D.A.T.2
Ryan, P.D.3
-
24
-
-
33947395609
-
Transgenic maize in the presence of ampicillin modifies the metabolic profile and microbial population structure of bovine rumen fluid in vitro
-
Koch M, Strobel E, Tebbe CC, Heritage J, Breves G, Huber K. 2006. Transgenic maize in the presence of ampicillin modifies the metabolic profile and microbial population structure of bovine rumen fluid in vitro. Brit J Nutr. 96:820-829.
-
(2006)
Brit J Nutr
, vol.96
, pp. 820-829
-
-
Koch, M.1
Strobel, E.2
Tebbe, C.C.3
Heritage, J.4
Breves, G.5
Huber, K.6
-
25
-
-
0036688182
-
Supplementing barley or rapeseed meal to dairy cows fed grass-red clover silage: II. Amino acid profile of microbial fractions
-
Korhonen M, Ahvenjärvi S, Vanhatalo A, Huhtanen P. 2002. Supplementing barley or rapeseed meal to dairy cows fed grass-red clover silage: II. Amino acid profile of microbial fractions. J Anim Sci. 80:2188-2196.
-
(2002)
J Anim Sci
, vol.80
, pp. 2188-2196
-
-
Korhonen, M.1
Ahvenjärvi, S.2
Vanhatalo, A.3
Huhtanen, P.4
-
26
-
-
0035984124
-
Stratification and seasonal stability of diverse bacterial communities in a Pinus merkusii (pine) forest soil in central Java, Indonesia
-
Krave AS, Lin B, Braster M, Laverman AM, van Straalen NM, Röling WFM, Van Verseveld HW. 2002. Stratification and seasonal stability of diverse bacterial communities in a Pinus merkusii (pine) forest soil in central Java, Indonesia. Environ Microbiol. 4:361-373.
-
(2002)
Environ Microbiol
, vol.4
, pp. 361-373
-
-
Krave, A.S.1
Lin, B.2
Braster, M.3
Laverman, A.M.4
van Straalen, N.M.5
Röling, W.F.M.6
Van Verseveld, H.W.7
-
27
-
-
24944533365
-
Nonmetric multidimensional scaling: A numerical method
-
Kruskal JB. 1964. Nonmetric multidimensional scaling: A numerical method. Psychometrika. 29:115-129.
-
(1964)
Psychometrika
, vol.29
, pp. 115-129
-
-
Kruskal, J.B.1
-
28
-
-
0001857117
-
Nucleic acid techniques in bacterial systematics
-
Stackebrandt E, Goodfellow M, editors, Chichester, UK: Wiley Intersience Publications. p
-
Lane DJ. 1991. Nucleic acid techniques in bacterial systematics. In: Stackebrandt E, Goodfellow M, editors. 16S/23S rRNA Sequencing. Chichester, UK: Wiley Intersience Publications. p. 115-175.
-
(1991)
16S/23S rRNA Sequencing
, pp. 115-175
-
-
Lane, D.J.1
-
29
-
-
56649092082
-
-
Legendre P, Legendre L. 2006. Numerical ecology. 2. Engl, ed., reprinted. Amsterdam: Elsevier.
-
Legendre P, Legendre L. 2006. Numerical ecology. 2. Engl, ed., reprinted. Amsterdam: Elsevier.
-
-
-
-
30
-
-
2542523843
-
-
Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar, Buchner A, Lai T, Steppi S, Jobb G, Förster W, Brettske I, Gerber S, Ginhart AW, Gross O, Grumann S, Hermann S, Jost R, König A, Liss T, Lüßmann R, May M, Nonhoff B, Reichel B, Strehlow R, Stamatakis A, Stuckmann N, Vilbig A, Lenke M, Ludwig T, Bode A, Schleifer K-H. 2004. ARB: a software environment for sequence data. Nuc Acids Res. 32:1363-1371.
-
Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar, Buchner A, Lai T, Steppi S, Jobb G, Förster W, Brettske I, Gerber S, Ginhart AW, Gross O, Grumann S, Hermann S, Jost R, König A, Liss T, Lüßmann R, May M, Nonhoff B, Reichel B, Strehlow R, Stamatakis A, Stuckmann N, Vilbig A, Lenke M, Ludwig T, Bode A, Schleifer K-H. 2004. ARB: a software environment for sequence data. Nuc Acids Res. 32:1363-1371.
-
-
-
-
31
-
-
0029875526
-
Screening of differentially amplified cDNA products from RNA arbitrarily primed PCR fingerprints using single strand conformation polymorphism (SSCP) gels
-
Mathieu-Daudé F, Cheng R, Welsh J, McClelland M. 1996. Screening of differentially amplified cDNA products from RNA arbitrarily primed PCR fingerprints using single strand conformation polymorphism (SSCP) gels. Nucleic Acids Res. 24:1504-1507.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 1504-1507
-
-
Mathieu-Daudé, F.1
Cheng, R.2
Welsh, J.3
McClelland, M.4
-
32
-
-
0018085050
-
Technique for fractionation of bacteria in rumen microbial ecosystem. II. Attachment of bacteria isolated from bovine rumen to cellulose powder in vitro and elution of bacteria attached therefrom
-
Minato H, Suto T. 1978. Technique for fractionation of bacteria in rumen microbial ecosystem. II. Attachment of bacteria isolated from bovine rumen to cellulose powder in vitro and elution of bacteria attached therefrom. J Gen Appl Microbiol. 24:1-16.
-
(1978)
J Gen Appl Microbiol
, vol.24
, pp. 1-16
-
-
Minato, H.1
Suto, T.2
-
33
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer G, De Waal EC, Uitierlinden AG. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol. 59:695-700.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
De Waal, E.C.2
Uitierlinden, A.G.3
-
35
-
-
0026568929
-
The ribosomal database project
-
Olsen GJ, Overbeek R, Larsen N, Marsh TL, McCaughey MJ, Maciukenas MA, Kuan W-M, Macke TJ, Xing Y, Woese CR. 1992. The ribosomal database project. Nucleic Acids Res. 20(suppl.):2199-2200.
-
(1992)
Nucleic Acids Res
, vol.20
, Issue.SUPPL.
, pp. 2199-2200
-
-
Olsen, G.J.1
Overbeek, R.2
Larsen, N.3
Marsh, T.L.4
McCaughey, M.J.5
Maciukenas, M.A.6
Kuan, W.-M.7
Macke, T.J.8
Xing, Y.9
Woese, C.R.10
-
36
-
-
21844497422
-
Variation in the composition of the ruminal bacterial microflora during the adaptation phase in an artificial fermentar (Rusitec)
-
Prevot S, Senaud J, Bohatier J, Prensier G. 1994. Variation in the composition of the ruminal bacterial microflora during the adaptation phase in an artificial fermentar (Rusitec). Zoolog Sci (Tokyo). 11:871-878.
-
(1994)
Zoolog Sci (Tokyo)
, vol.11
, pp. 871-878
-
-
Prevot, S.1
Senaud, J.2
Bohatier, J.3
Prensier, G.4
-
37
-
-
0037866668
-
Diet and procedures used to detach particle-associated microbes from ruminal digesta influence chemical composition of microbes and estimation of microbial growth in Rusitec fermenters
-
Ranilla MJ, Carro MD. 2003. Diet and procedures used to detach particle-associated microbes from ruminal digesta influence chemical composition of microbes and estimation of microbial growth in Rusitec fermenters. J Anim Sci. 81:537-544.
-
(2003)
J Anim Sci
, vol.81
, pp. 537-544
-
-
Ranilla, M.J.1
Carro, M.D.2
-
39
-
-
0033796744
-
Composition of bacteria harvested from the liquid and solid fractions of the rumen of sheep as influenced by feed intake
-
Rodríguez CA, González J, Alvir MR, Repetto JL, Centeno C, Lamrani F. 2000. Composition of bacteria harvested from the liquid and solid fractions of the rumen of sheep as influenced by feed intake. Brit J Nutr. 84:369-376.
-
(2000)
Brit J Nutr
, vol.84
, pp. 369-376
-
-
Rodríguez, C.A.1
González, J.2
Alvir, M.R.3
Repetto, J.L.4
Centeno, C.5
Lamrani, F.6
-
40
-
-
0031764376
-
A new approach to utilize PCR - single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis
-
Schwieger F, Tebbe CC. 1998. A new approach to utilize PCR - single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis. Appl Environ Microbiol. 64:4870-4876.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 4870-4876
-
-
Schwieger, F.1
Tebbe, C.C.2
-
41
-
-
0003341851
-
Nucleic acid techniques in bacterial systematics
-
Stackrandt E, Goodfellow M, editors, New York: John Wiley and Sons Ltd. p
-
Stahl DA, Amann RI. 1991. Nucleic acid techniques in bacterial systematics. In: Stackrandt E, Goodfellow M, editors. Development and application of nucleic acid probes. New York: John Wiley and Sons Ltd. p. 205-248.
-
(1991)
Development and application of nucleic acid probes
, pp. 205-248
-
-
Stahl, D.A.1
Amann, R.I.2
-
42
-
-
0024005650
-
Use of phylogenetically based hybridization probes for studies of ruminai microbial ecology
-
Stahl DA, Flesher B, Mansfield HR, Montgomery L. 1988. Use of phylogenetically based hybridization probes for studies of ruminai microbial ecology. Appl Environ Microbiol. 54:1079-1084.
-
(1988)
Appl Environ Microbiol
, vol.54
, pp. 1079-1084
-
-
Stahl, D.A.1
Flesher, B.2
Mansfield, H.R.3
Montgomery, L.4
-
43
-
-
38049151100
-
Diversity responses of rumen microbial communities to Fusarium-contaminated feed, evaluated with rumen simulating technology (Rusitec)
-
Strobel E, Seeling K, Tebbe CC. 2008. Diversity responses of rumen microbial communities to Fusarium-contaminated feed, evaluated with rumen simulating technology (Rusitec). Environ Microbiol. 10:483-496.
-
(2008)
Environ Microbiol
, vol.10
, pp. 483-496
-
-
Strobel, E.1
Seeling, K.2
Tebbe, C.C.3
-
44
-
-
56649098172
-
Genetic profiles of rumen microbial communities: A cultivation independent technique to study the effect of feeding
-
Strobel E, Wesolowski J, Flachowsky G, Tebbe CC. 2004. Genetic profiles of rumen microbial communities: A cultivation independent technique to study the effect of feeding. Proc Soc Nutr Physiol. 13:81.
-
(2004)
Proc Soc Nutr Physiol
, vol.13
, pp. 81
-
-
Strobel, E.1
Wesolowski, J.2
Flachowsky, G.3
Tebbe, C.C.4
-
45
-
-
0345195995
-
Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
-
von Wintzingerode F, Gobel UB, Stackebrandt E. 1997. Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis. FEMS Microbiol Rev. 21:213-229.
-
(1997)
FEMS Microbiol Rev
, vol.21
, pp. 213-229
-
-
von Wintzingerode, F.1
Gobel, U.B.2
Stackebrandt, E.3
-
46
-
-
26044457770
-
Cluster analysis and statistical comparison of molecular community profile data
-
Kowalchuk GA, de Bruijn FJ, Head IM, Akkermans ADL, van Elsas JD, editors, Dordrecht: Kluwer Academic Publishers, p
-
van Verseveld HW, Röling WFM. 2004. Cluster analysis and statistical comparison of molecular community profile data. In: Kowalchuk GA, de Bruijn FJ, Head IM, Akkermans ADL, van Elsas JD, editors. Molecular microbial ecology manual 2. Dordrecht: Kluwer Academic Publishers, p. 1373-1396.
-
(2004)
Molecular microbial ecology manual 2
, pp. 1373-1396
-
-
van Verseveld, H.W.1
Röling, W.F.M.2
-
47
-
-
0028545586
-
Ruminal microbiology, biotechnology, and ruminant nutrition: Progress and problems
-
Wallace RJ. 1994. Ruminal microbiology, biotechnology, and ruminant nutrition: Progress and problems. J Anim Sci. 72:2992-3003.
-
(1994)
J Anim Sci
, vol.72
, pp. 2992-3003
-
-
Wallace, R.J.1
-
49
-
-
0031816030
-
Phylogenetic analysis of rumen bacteria by comparative sequence analysis of cloned 16S rRNA genes
-
Whiteford MF, Forster RJ, Beard CE, Gong J, Teather RM. 1998. Phylogenetic analysis of rumen bacteria by comparative sequence analysis of cloned 16S rRNA genes. Anaerobe. 4:153-163.
-
(1998)
Anaerobe
, vol.4
, pp. 153-163
-
-
Whiteford, M.F.1
Forster, R.J.2
Beard, C.E.3
Gong, J.4
Teather, R.M.5
|