Molecular and phylogenetic analysis of HIV-1 variants circulating in Italy

Infectious Agents and Cancer

Volumn 3, Issue 1, 2008, Pages

  Buonaguro, Luigi ^a   Petrizzo, Annacarmen ^a   Tagliamonte, Maria ^a   Vitone, Francesca ^b   Re, Maria Carla ^b,c   Pilotti, Elisabetta ^d   Casoli, Claudio ^e   Sbreglia, Costanza ^f   Perrella, Oreste ^f   Tornesello, Maria Lina ^a   Buonaguro, Franco M ^a  

^a NATIONAL CANCER INSTITUTE   (Italy)

^b UNIVERSITY OF BOLOGNA   (Italy)

^c NATIONAL INSTITUTE OF BIOSTRUCTURES AND BIOSYSTEMS   (Italy)

^d UNIVERSITY OF PARMA   (Italy)

^e UNIVERSITY OF MILAN   (Italy)

^f AO Dei Colli Hospital for Infectious Diseases D Cotugno   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

GAG PROTEIN; VIRUS ENVELOPE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CLINICAL ARTICLE; CONTROLLED STUDY; FEMALE; GENETIC ANALYSIS; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; ITALY; MALE; NONHUMAN; PHYLOGENY; SEXUAL TRANSMISSION; VIRUS IDENTIFICATION; VIRUS STRAIN;

EID: 56649102325     PISSN: None     EISSN: 17509378     Source Type: Journal    
DOI: 10.1186/1750-9378-3-13     Document Type: Article

References (37)

1. Human immunodeficiency virus type 1 subtype distribution in the worldwide epidemic: pathogenetic and therapeutic implications. L Buonaguro ML Tornesello FM Buonaguro, J Virol 2007 81 10209 10219 17634242 10.1128/JVI.00872-07
2. Aggiornamento dei casi di AIDS notificati Italia - Dec 2006. Italian AIDS Operative Center, Not Ist Sup Sanità 2007 20 S1
3. Positive modification of injecting behavior among intravenous heroin users from Milan and Northern Italy: 1987-1989. A Nicolosi S Molinari M Musicco A Saracco N Ziliani A Lazzarin, Br J Addiction 1991 86 91 102 10.1111/j.1360-0443.1991.tb02632.x
4. Declining prevalence of HIV infection among injecting drug users entering drug treatment in Italy: 1990-1991. G Rezza A De Rose M Dorrucci C Arpino I Serafin, Eur J Epidemiol 1993 9 663 666 8150071 10.1007/BF00211443
5. Prevalence of multiple dideoxynucleoside analogue resistance (MddNR) in a multicenter cohort of HIV-1-infected Italian patients with virologic failure. C Balotta M Violin L Monno P Bagnarelli C Riva G Facchi A Berlusconi M Lippi S Rusconi M Clementi M Galli G Angarano, J Acquir Immune Defic Syndr 2000 24 3 232 240 10969347
6. Increasing prevalence of non-clade B HIV-1 strains in heterosexual men and women, as monitored by analysis of reverse transcriptase and protease sequences. C Balotta G Facchi M Violin S Van Dooren A Cozzi-Lepri F Forbici A Bertoli C Riva D Senese P Caramello G Carnevale G Rizzardini L Cremonini L Monno G Rezza CF Perno G Ippolito A d'Arminio-Monforte AM Vandamme M Moroni, J Acquir Immune Defic Syndr 2001 27 5 499 505 11511828
7. Identification of the minimal conserved structure of HIV-1 protease in the presence and absence of drug pressure. F Ceccherini-Silberstein F Erba F Gago A Bertoli F Forbici MC Bellocchi C Gori R d'Arrigo L Marcon C Balotta A Antinori AD Monforte CF Perno, AIDS 2004 18 F11 F19 15280771 10.1097/01.aids.0000131394.76221.02
8. HIV-1 subtypes and circulating recombinant forms (CRFs) from HIV-infected patients residing in two regions of central and southern Italy. L Monno G Brindicci CS Lo G Punzi T Scarabaggio C Riva BC Di P Pierotti A Saracino A Lagioia F Mazzotta C Balotta G Angarano, J Med Virol 2005 75 483 490 15714483 10.1002/jmv.20300
9. Divergent distribution of HIV-1 drug-resistant variants on and off antiretroviral therapy. G Venturi L Romano T Carli P Corsi L Pippi PE Valensin M Zazzi, Antivir Ther 2002 7 4 245 250 12553478
10. Genotypic and phenotypic correlates of the HIV Type 1 env gene evolution in infected children with discordant response to antiretroviral therapy. P Bagnarelli M Vecchi N Burighel D Bellanova S Menzo M Clementi RA De, AIDS Res Hum Retroviruses 2004 20 1306 1313 15650423 10.1089/aid.2004.20.1306
11. Comprehensive cross-clade neutralization analysis of a panel of anti-human immunodeficiency virus type 1 monoclonal antibodies. JM Binley T Wrin B Korber MB Zwick M Wang C Chappey G Stiegler R Kunert S Zolla-Pazner H Katinger CJ Petropoulos DR Burton, J Virol 2004 78 13232 13252 15542675 10.1128/JVI.78.23.13232-13252.2004
12. Detection of HIV type 1 non-B subtypes in Sicily, Italy. F Tramuto F Vitale F Bonura N Romano, AIDS Res Hum Retroviruses 2004 20 251 254 15018714 10.1089/088922204773004987
13. Molecular and phylogenetic characterization of HIV variants in Italian primary HIV infections (PHI): identification of non-B subtype variants. L Buonaguro M Tagliamonte ML Tornesello D Ciuffreda B Capiluppi L Lopalco A Lazzarin G Tambussi FM Buonaguro, J Biol Regul Homeost Agents 2002 16 1 44 48 12003173
14. Screening of HIV-1 isolates by reverse Heteroduplex Mobility Assay and identification of non-B subtypes in Italy. L Buonaguro M Tagliamonte ML Tornesello E Pilotti C Casoli A Lazzarin G Tambussi M Ciccozzi G Rezza FM Buonaguro, J Acquir Immune Defic Syndr 2004 37 2 1295 1306 10.1097/01.qai. 0000123273.76723.04 15385738
15. Evolution of the HIV-1 V3 region in the Italian epidemic. L Buonaguro M Tagliamonte ML Tornesello FM Buonaguro, New Microbiol 2007 30 1 1 11 17319594
16. Genetic and phylogenetic evolution of HIV-1 in a low subtype heterogeneity epidemic: the Italian example. L Buonaguro M Tagliamonte ML Tornesello FM Buonaguro, Retrovirology 2007 4 34 17517125 10.1186/1742-4690-4-34
17. Genetic and phylogenetic characterization of structural genes from non-B HIV-1 subtypes in Italy. M Tagliamonte N Vidal ML Tornesello M Peeters FM Buonaguro L Buonaguro, AIDS Res Hum Retroviruses 2006 22 1045 1051 17067276 10.1089/aid.2006.22.1045
18. Prevalence and origin of HIV-1 group M subtypes among patients attending a Belgian hospital in 1999. J Snoeck S Van Dooren K Van Laethem I Derdelinckx E Van Wijngaerden E De Clercq AM Vandamme, Virus Research 2002 85 95 107 11955642 10.1016/S0168-1702(02)00021-7
19. Longstanding presence in Belgians of multiple non-B HIV-1 subtypes. K Fransen A Buvé JN Nkengasong M Laga G van der Groen, Lancet 1996 347 1403 8637352 10.1016/S0140-6736(96)91042-9
20. Presence of multiple HIV subtypes and a high frequency of subtype chimeric viruses in heterosexually infected women. AKN Iversen GH Learn L Fugger J Gerstoft JI Mullins P Skinhoj, J Acquir Immune Defic Syndr 1999 22 4 325 332 10634193
21. Biological and molecular characterization of subtype D, G, and A/D recombinant HIV-1 transmission in Sweden. T Leitner D Escanilla S Marquina J Wahlberg C Brostrom HB Hansson M Uhlen J Albert, Virology 1995 209 136 146 7747463 10.1006/viro.1995.1237
22. High frequency of non-B subtypes in newly diagnosed HIV-1 infections in Switzerland. J Boni H Pyra M Gebhardt L Perrin P Burgisser L Matter W Fierz P Erb JC Piffaretti E Minder P Grob JJ Burckhardt M Zwahlen J Schupbach, J Acquir Immune Defic Syndr 1999 22 2 174 179 10843532
23. HIV-1 diversity in France, 1996-1998. The AC 11 laboratory network. E Couturier F Damond P Roques HJ Fleury F Barin JB Brunet F Brun-Vezinet F Simon, AIDS 2000 14 289 296 10716505 10.1097/00002030-200002180-00011
24. Molecular epidemiology of vertical human immunodeficiency virus type 1 transmission in Greece: evidence of non-B subtypes. D Paraskevis E Magiorkinis M Theodoridou G Mostrou V Papaevangelou VG Kiosses A Hatzakis N Matsianotis, J Hum Virol 1999 2 6 239 243 10774550
25. The prevalence of non-B subtype HIV-1 in a London HIV/AIDS outpatient clinic. H Devereux C Loveday A Burke L Dann M Johnson A Phillips, AIDS 1999 13 142 10207561 10.1097/00002030-199912240-00001
26. HIV-1 subtype J recombinant viruses in Spain. A Holguin A Alvarez V Soriano, AIDS Res Hum Retroviruses 2002 18 523 9 12015907 10.1089/ 088922202317406682
27. High prevalence of HIV-1 subtype G and natural polymorphisms at the protease gene among HIV-infected immigrants in Madrid. A Holguin A Alvarez V Soriano, AIDS 2002 16 1163 70 12004275 10.1097/00002030-200205240-00010
28. Subtype and genotypic resistance analysis of HIV-1 infected patients in Austria. B Falkensammer M Doerler HH Kessler E Puchhammer-Stoeckl W Parson C Duftner MP Dierich H Stoiber, Wien Klin Wochenschr 2007 119 181 185 17427022 10.1007/s00508-006-0745-4
29. Characterization of an Old Complex Circulating Recombinant Form, CRF27 cpx, Originating from the Democratic Republic of Congo (DRC) and Circulating in France. N Vidal P Frange ML Chaix C Mulanga F Lepira SE Bazepeo C Goujard L Meyer C Rouzioux E Delaporte M Peeters, AIDS Res Hum Retroviruses 2008 24 315 321 18257687 10.1089/aid.2007.0241
30. Genetic characterization of complex inter-recombinant HIV-1 strains circulating in Spain and reliability of distinct rapid subtyping tools. A Holguin E Lospitao M Lopez ER de Arellano MJ Pena RJ del C Martin V Soriano, J Med Virol 2008 80 383 391 18205216 10.1002/jmv.21105
31. Heteroduplex mobility assay and phylogenetic analysis of V3 region sequences of HIV 1 isolates from Gulu - Northern Uganda. L Buonaguro E Del Gaudio M Monaco D Greco P Corti E Beth-Giraldo FM Buonaguro G Giraldo, J Virol 1995 69 12 7971 7981 7494310
32. Molecular and phylogenetic analysis of HIV-1 variants circulating among injecting drug users in Mashhad-Iran. HR Naderi M Tagliamonte ML Tornesello M Ciccozzi G Rezza R Farid FM Buonaguro L Buonaguro, Infectious Agents and Cancer 2006 1 4 10.1186/1750-9378-1-4
33. Evaluation of a modified version of Heteroduplex Mobility Assay for rapid screening of HIV-1 isolates in epidemics characterized by mono/dual clade predominance. L Buonaguro M Tagliamonte ML Tornesello FM Buonaguro, J Virol Methods 2005 124 123 134 15664060 10.1016/j.jviromet.2004.11.014
34. Analysis of HIV-1 env gene V3 loop sequence in a southern italian cohort of intravenous drug users. L Buonaguro D Greco ML Tornesello M Rago M Zaccarelli F Curcio N Sguazzo G Pipolo E Beth-Giraldo FM Buonaguro G Giraldo, AIDS 1994 8 268 269 8043234 10.1097/00002030-199402000-00018
35. Biological and genetic characterization of a human immunodeficiency virus strain resistant to CXCR4 antagonist T134 11. K Kanbara S Sato J Tanuma H Tamamura K Gotoh M Yoshimori T Kanamoto M Kitano N Fujii H Nakashima, AIDS Res Hum Retroviruses 2001 17 615 622 11375057 10.1089/088922201300119716
36. The bicyclams, a new class of potent human immunodeficiency virus inhibitors, block viral entry after binding 4. VK De D Reymen P Griffin A Steinkasserer G Werner GJ Bridger J Este W James GW Henson J Desmyter J Anne CI De, Antiviral Res 1996 29 209 219 8739600 10.1016/0166-3542(95)00837-3
37. T-cell-line-tropic human immunodeficiency virus type 1 that is made resistant to stromal cell-derived factor 1alpha contains mutations in the envelope gp120 but does not show a switch in coreceptor use 32. D Schols JA Este C Cabrera CE De, J Virol 1998 72 5 4032 4037 9557691