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Volumn 229, Issue 1, 2008, Pages 53-71

Transcriptional profiling of the PDR gene family in rice roots in response to plant growth regulators, redox perturbations and weak organic acid stresses

Author keywords

Oligo arrays; Oryza; Phytohormones; Pleiotropic drug resistance proteins; Roots; Weak organic acids

Indexed keywords

ABC TRANSPORTER; ABSCISIC ACID; ACID; CYCLOPENTANE DERIVATIVE; CYTOKININ; INDOLEACETIC ACID DERIVATIVE; JASMONIC ACID; OXYLIPIN; PHYTOHORMONE; SALICYLIC ACID; VEGETABLE PROTEIN;

EID: 56649088157     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-008-0810-5     Document Type: Article
Times cited : (45)

References (51)
  • 2
    • 15044360824 scopus 로고    scopus 로고
    • Mediation of pathogen resistance by exudation of antimicrobials from roots
    • HP Bais B Prithiviraj AK Jha FM Ausubel JM Vivanco 2005 Mediation of pathogen resistance by exudation of antimicrobials from roots Nature 434 217 221
    • (2005) Nature , vol.434 , pp. 217-221
    • Bais, H.P.1    Prithiviraj, B.2    Jha, A.K.3    Ausubel, F.M.4    Vivanco, J.M.5
  • 3
    • 0344099015 scopus 로고    scopus 로고
    • Pathogen-responsive expression of a putative ATP-binding cassette transporter gene conferring resistance to the diterpenoid sclareol is regulated by multiple defense signaling pathways in Arabidopsis
    • EJ Campbell PM Schenk K Kazan IAMA Penninckx JP Anderson DJ Maclean BPA Cammue PR Ebert JM Manners 2003 Pathogen-responsive expression of a putative ATP-binding cassette transporter gene conferring resistance to the diterpenoid sclareol is regulated by multiple defense signaling pathways in Arabidopsis Plant Physiol 133 1272 1284
    • (2003) Plant Physiol , vol.133 , pp. 1272-1284
    • Campbell, E.J.1    Schenk, P.M.2    Kazan, K.3    Iama, P.4    Anderson, J.P.5    MacLean, D.J.6    Cammue, B.P.A.7    Ebert, P.R.8    Manners, J.M.9
  • 4
    • 34548227925 scopus 로고    scopus 로고
    • Arabidopsis NIP2;1: A major intrinsic protein transporter of lactic acid induced by anoxic stress
    • W-G Choi DM Roberts 2007 Arabidopsis NIP2;1: a major intrinsic protein transporter of lactic acid induced by anoxic stress J Biol Chem 282 24209 24218
    • (2007) J Biol Chem , vol.282 , pp. 24209-24218
    • Choi, W.-G.1    Roberts, D.M.2
  • 5
    • 31844452561 scopus 로고    scopus 로고
    • Organization and function of the plant pleiotropic drug resistance ABC transporter family
    • J Crouzet T Trombik AS Fraysse M Boutry 2006 Organization and function of the plant pleiotropic drug resistance ABC transporter family FEBS Lett 580 1123 1130
    • (2006) FEBS Lett , vol.580 , pp. 1123-1130
    • Crouzet, J.1    Trombik, T.2    Fraysse, A.S.3    Boutry, M.4
  • 7
    • 34248206152 scopus 로고    scopus 로고
    • The roles of organic anion permeases in aluminum resistance and mineral nutrition
    • E Delhaize BD Gruber PR Ryan 2007 The roles of organic anion permeases in aluminum resistance and mineral nutrition FEBS Lett 581 2255 2262
    • (2007) FEBS Lett , vol.581 , pp. 2255-2262
    • Delhaize, E.1    Gruber, B.D.2    Ryan, P.R.3
  • 8
    • 28844436462 scopus 로고    scopus 로고
    • NtPDR3, an iron-deficiency inducible ABC transporter in Nicotiana tabacum
    • E Ducos AS Fraysse M Boutry 2005 NtPDR3, an iron-deficiency inducible ABC transporter in Nicotiana tabacum FEBS Lett 579 6791 6795
    • (2005) FEBS Lett , vol.579 , pp. 6791-6795
    • Ducos, E.1    Fraysse, A.S.2    Boutry, M.3
  • 9
    • 33747875275 scopus 로고    scopus 로고
    • Isolation of a novel ABC-transporter gene from soybean induced by salicylic acid
    • H Eichhorn M Klinghammer P Becht R Tenhaken 2006 Isolation of a novel ABC-transporter gene from soybean induced by salicylic acid J Exp Bot 57 2193 2201
    • (2006) J Exp Bot , vol.57 , pp. 2193-2201
    • Eichhorn, H.1    Klinghammer, M.2    Becht, P.3    Tenhaken, R.4
  • 10
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 95 105
    • (1985) Evolution , vol.39 , pp. 95-105
    • Felsenstein, J.1
  • 11
    • 4644267419 scopus 로고    scopus 로고
    • Inventory and comparative analysis of rice and Arabidopsis ATP-binding cassette (ABC) systems
    • O Garcia P Bouige C Forestier E Dassa 2004 Inventory and comparative analysis of rice and Arabidopsis ATP-binding cassette (ABC) systems J Mol Biol 343 249 265
    • (2004) J Mol Biol , vol.343 , pp. 249-265
    • Garcia, O.1    Bouige, P.2    Forestier, C.3    Dassa, E.4
  • 12
    • 0037023349 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza sativa L. spp. japonica)
    • SA Goff D Ricke T-H Lan 2002 A draft sequence of the rice genome (Oryza sativa L. spp. japonica) Science 296 92 100
    • (2002) Science , vol.296 , pp. 92-100
    • Goff, S.A.1    Ricke, D.2    Lan, T.-H.3
  • 13
    • 0035925092 scopus 로고    scopus 로고
    • Plant-fungal interactions: The search for phytoalexins and other antifungal compounds from higher plants
    • RJ Grayer T Kokubun 2001 Plant-fungal interactions: the search for phytoalexins and other antifungal compounds from higher plants Phytochemistry 56 253 263
    • (2001) Phytochemistry , vol.56 , pp. 253-263
    • Grayer, R.J.1    Kokubun, T.2
  • 14
    • 33747353371 scopus 로고    scopus 로고
    • A new physiological role for Pdr12p in Saccharomyces cerevisiae: Export of aromatic and branched-chain organic acids produced in amino acid catabolism
    • LA Hazelwood SL Tai VM Boer JH De Winde JT Pronk JM Daran 2006 A new physiological role for Pdr12p in Saccharomyces cerevisiae: export of aromatic and branched-chain organic acids produced in amino acid catabolism FEMS Yeast Res 6 937 945
    • (2006) FEMS Yeast Res , vol.6 , pp. 937-945
    • Hazelwood, L.A.1    Tai, S.L.2    Boer, V.M.3    De Winde, J.H.4    Pronk, J.T.5    Daran, J.M.6
  • 15
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • D Higgins J Thompson T Gibson JD Thompson DG Higgins TJ Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673 4680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Higgins, D.1    Thompson, J.2    Gibson, T.3    Thompson, J.D.4    Higgins, D.G.5    Gibson, T.J.6
  • 16
    • 33748789585 scopus 로고    scopus 로고
    • A gain-of-function mutation in the Arabidopsis pleiotropic drug resistance transporter PDR9 confers resistance to auxinic herbicides
    • H Ito WM Gray 2006 A gain-of-function mutation in the Arabidopsis pleiotropic drug resistance transporter PDR9 confers resistance to auxinic herbicides Plant Physiol 142 63 74
    • (2006) Plant Physiol , vol.142 , pp. 63-74
    • Ito, H.1    Gray, W.M.2
  • 17
    • 33846857991 scopus 로고    scopus 로고
    • Curated genome annotation of Oryza sativa ssp. japonica and comparative analysis with Arabidopsis thaliana. the Rice Annotation Project
    • T Itoh T Taneka RA Barrero 2007 Curated genome annotation of Oryza sativa ssp. japonica and comparative analysis with Arabidopsis thaliana. The Rice Annotation Project Genome Res 17 175 183
    • (2007) Genome Res , vol.17 , pp. 175-183
    • Itoh, T.1    Taneka, T.2    Barrero, R.A.3
  • 19
    • 0035018616 scopus 로고    scopus 로고
    • A plant plasma membrane ATP binding cassette-type transporter is involved in antifungal terpenoid secretion
    • M Jasinski Y Stukkens H Degand B Purnelle J Marchand-Brynaert M Boutry 2001 A plant plasma membrane ATP binding cassette-type transporter is involved in antifungal terpenoid secretion Plant Cell 13 1095 1107
    • (2001) Plant Cell , vol.13 , pp. 1095-1107
    • Jasinski, M.1    Stukkens, Y.2    Degand, H.3    Purnelle, B.4    Marchand-Brynaert, J.5    Boutry, M.6
  • 20
    • 0037353424 scopus 로고    scopus 로고
    • The ATP-binding cassette transporters: Structure function and gene family comparison between rice and Arabidopsis
    • M Jasinski E Ducos E Martinoia M Boutry 2003 The ATP-binding cassette transporters: structure function and gene family comparison between rice and Arabidopsis Plant Physiol 131 1169 1177
    • (2003) Plant Physiol , vol.131 , pp. 1169-1177
    • Jasinski, M.1    Ducos, E.2    Martinoia, E.3    Boutry, M.4
  • 21
    • 0037624063 scopus 로고    scopus 로고
    • Collection mapping and annotation of over 28,000 cDNA clones from japonica rice
    • S Kikuchi K Satoh T Nagata 2003 Collection mapping and annotation of over 28,000 cDNA clones from japonica rice Science 301 376 379
    • (2003) Science , vol.301 , pp. 376-379
    • Kikuchi, S.1    Satoh, K.2    Nagata, T.3
  • 22
    • 34247270870 scopus 로고    scopus 로고
    • The ABC transporter AtPDR8 is a cadmium extrusion pump conferring heavy metal resistance
    • D-Y Kim L Bovet M Maeshima E Martinoia Y Lee 2007 The ABC transporter AtPDR8 is a cadmium extrusion pump conferring heavy metal resistance Plant J 50 207 218
    • (2007) Plant J , vol.50 , pp. 207-218
    • Kim, D.-Y.1    Bovet, L.2    Maeshima, M.3    Martinoia, E.4    Lee, Y.5
  • 23
    • 33645709418 scopus 로고    scopus 로고
    • Loss of AtPDR8, a plasma membrane ABC transporter of Arabidopsis thaliana, causes hypersensitive cell death upon pathogen infection
    • Y Kobae T Sekino H Yoshioka T Nakagawa E Martinoia M Maeshima 2006 Loss of AtPDR8, a plasma membrane ABC transporter of Arabidopsis thaliana, causes hypersensitive cell death upon pathogen infection Plant Cell Physiol 47 309 318
    • (2006) Plant Cell Physiol , vol.47 , pp. 309-318
    • Kobae, Y.1    Sekino, T.2    Yoshioka, H.3    Nakagawa, T.4    Martinoia, E.5    Maeshima, M.6
  • 25
    • 26944446203 scopus 로고    scopus 로고
    • AtPDR12 contributes to lead resistance in Arabidopsis
    • M Lee K Lee J Lee EW Noh Y Lee 2005 AtPDR12 contributes to lead resistance in Arabidopsis Plant Physiol 138 827 836
    • (2005) Plant Physiol , vol.138 , pp. 827-836
    • Lee, M.1    Lee, K.2    Lee, J.3    Noh, E.W.4    Lee, Y.5
  • 26
    • 33845874115 scopus 로고    scopus 로고
    • Effect of transporters on the secretion of phytochemicals by the roots of Arabidopsis thaliana
    • VM Loyola-Vargas CD Broeckling D Badri JM Vivanco 2007 Effect of transporters on the secretion of phytochemicals by the roots of Arabidopsis thaliana Planta 225 301 310
    • (2007) Planta , vol.225 , pp. 301-310
    • Loyola-Vargas, V.M.1    Broeckling, C.D.2    Badri, D.3    Vivanco, J.M.4
  • 27
    • 0142138692 scopus 로고    scopus 로고
    • OsPDR9 which encodes a PDR-type ABC transporter is induced by heavy metals, hypoxic stress and redox perturbations in rice roots
    • A Moons 2003 OsPDR9 which encodes a PDR-type ABC transporter is induced by heavy metals, hypoxic stress and redox perturbations in rice roots FEBS Lett 553 370 376
    • (2003) FEBS Lett , vol.553 , pp. 370-376
    • Moons, A.1
  • 28
    • 0142200326 scopus 로고    scopus 로고
    • Osgstu3 and osgstu4 encoding tau class glutathione S-transferases are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots
    • A Moons 2003 Osgstu3 and osgstu4 encoding tau class glutathione S-transferases are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots FEBS Lett 553 427 432
    • (2003) FEBS Lett , vol.553 , pp. 427-432
    • Moons, A.1
  • 29
    • 0031412446 scopus 로고    scopus 로고
    • Antagonistic effects of abscisic acid and jasmonates on salt stress-inducible transcripts in rice roots
    • A Moons E Prinsen G Bauw M Van Montagu 1997 Antagonistic effects of abscisic acid and jasmonates on salt stress-inducible transcripts in rice roots Plant Cell 9 2243 2259
    • (1997) Plant Cell , vol.9 , pp. 2243-2259
    • Moons, A.1    Prinsen, E.2    Bauw, G.3    Van Montagu, M.4
  • 30
    • 23644458112 scopus 로고    scopus 로고
    • Retrograde regulation of multidrug resistance in Saccharomyces cerevisiae
    • WS Moye-Rowley 2005 Retrograde regulation of multidrug resistance in Saccharomyces cerevisiae Gene 345 15 21
    • (2005) Gene , vol.345 , pp. 15-21
    • Moye-Rowley, W.S.1
  • 32
    • 3042842458 scopus 로고    scopus 로고
    • NPR1: The spider in the web of induced resistance signaling pathways
    • CMJ Pieterse LC Van Loon 2004 NPR1: the spider in the web of induced resistance signaling pathways Curr Opin Plant Biol 7 456 464
    • (2004) Curr Opin Plant Biol , vol.7 , pp. 456-464
    • Pieterse, C.M.J.1    Van Loon, L.C.2
  • 34
    • 34248222428 scopus 로고    scopus 로고
    • Plant ATP-binding cassette transporters
    • PA Rea 2007 Plant ATP-binding cassette transporters Annu Rev Plant Biol 58 347 375
    • (2007) Annu Rev Plant Biol , vol.58 , pp. 347-375
    • Rea, P.A.1
  • 36
    • 0037042223 scopus 로고    scopus 로고
    • CDNA cloning and characterization of tobacco ABC transporter: NtPDR1 is a novel elicitor-responsive gene
    • M Sasabe K Toyoda T Shiraishi Y Inagaki Y Ichinose 2002 cDNA cloning and characterization of tobacco ABC transporter: NtPDR1 is a novel elicitor-responsive gene FEBS Lett 518 164 168
    • (2002) FEBS Lett , vol.518 , pp. 164-168
    • Sasabe, M.1    Toyoda, K.2    Shiraishi, T.3    Inagaki, Y.4    Ichinose, Y.5
  • 37
    • 0037153190 scopus 로고    scopus 로고
    • The genome sequence and structure of rice chromosome 1
    • T Sasaki T Matsumoto K Yamamoto 2002 The genome sequence and structure of rice chromosome 1 Nature 420 312 316
    • (2002) Nature , vol.420 , pp. 312-316
    • Sasaki, T.1    Matsumoto, T.2    Yamamoto, K.3
  • 39
    • 4944221201 scopus 로고    scopus 로고
    • The rice leaf blast pathogen undergoes developmental processes typical of root-infecting fungi
    • A Sesma AE Osbourn 2004 The rice leaf blast pathogen undergoes developmental processes typical of root-infecting fungi Nature 431 582 586
    • (2004) Nature , vol.431 , pp. 582-586
    • Sesma, A.1    Osbourn, A.E.2
  • 40
    • 0029741888 scopus 로고    scopus 로고
    • Hormonal and environmental regulation of a plant PDR5-like ABC transporter
    • CC Smart AJ Fleming 1996 Hormonal and environmental regulation of a plant PDR5-like ABC transporter J Biol Chem 271 19351 19357
    • (1996) J Biol Chem , vol.271 , pp. 19351-19357
    • Smart, C.C.1    Fleming, A.J.2
  • 41
    • 33646831086 scopus 로고    scopus 로고
    • Arabidopsis PEN3/PDR8, an ATP binding cassette transporter, contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration
    • M Stein J Dittgen C Sanchez-Rodriguez B-H Hou A Molina P Schulze-Lefert V Lipka S Somerville 2006 Arabidopsis PEN3/PDR8, an ATP binding cassette transporter, contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration Plant Cell 18 731 746
    • (2006) Plant Cell , vol.18 , pp. 731-746
    • Stein, M.1    Dittgen, J.2    Sanchez-Rodriguez, C.3    Hou, B.-H.4    Molina, A.5    Schulze-Lefert, P.6    Lipka, V.7    Somerville, S.8
  • 42
    • 28844508237 scopus 로고    scopus 로고
    • NpPDR1, a pleiotropic drug resistance-type ATP-binding cassette transporter from Nicotiana plumbaginifolia, plays a major role in plant pathogen defense
    • Y Stukkens A Bultreys S Grec T Trombik D Vanham M Boutry 2005 NpPDR1, a pleiotropic drug resistance-type ATP-binding cassette transporter from Nicotiana plumbaginifolia, plays a major role in plant pathogen defense Plant Physiol 139 341 352
    • (2005) Plant Physiol , vol.139 , pp. 341-352
    • Stukkens, Y.1    Bultreys, A.2    Grec, S.3    Trombik, T.4    Vanham, D.5    Boutry, M.6
  • 43
    • 47249141658 scopus 로고    scopus 로고
    • Global patterns of gene expression in rice cultivars undergoing a susceptible or resistant interaction with the parasitic plant Striga hermonthica
    • PJ Swarbrick K Huang G Liu J Slate MC Press JD Scholes 2008 Global patterns of gene expression in rice cultivars undergoing a susceptible or resistant interaction with the parasitic plant Striga hermonthica New Phytol 119 515 529
    • (2008) New Phytol , vol.119 , pp. 515-529
    • Swarbrick, P.J.1    Huang, K.2    Liu, G.3    Slate, J.4    Press, M.C.5    Scholes, J.D.6
  • 44
    • 37449014518 scopus 로고    scopus 로고
    • Identification of a cluster IV pleiotropic drug resistance transporter gene in the style of Nicotiana plumbaginifolia
    • T Trombik M Jasinsky J Crouzet M Boutry 2008 Identification of a cluster IV pleiotropic drug resistance transporter gene in the style of Nicotiana plumbaginifolia Plant Mol Biol 66 165 175
    • (2008) Plant Mol Biol , vol.66 , pp. 165-175
    • Trombik, T.1    Jasinsky, M.2    Crouzet, J.3    Boutry, M.4
  • 45
    • 0036835919 scopus 로고    scopus 로고
    • The plant PDR family of ABC transporters
    • S Van den Brule CC Smart 2002 The plant PDR family of ABC transporters Planta 216 95 106
    • (2002) Planta , vol.216 , pp. 95-106
    • Van Den Brule, S.1    Smart, C.C.2
  • 46
    • 0036017868 scopus 로고    scopus 로고
    • The ABC transporter SpTUR2 confers resistance to the antifungal diterpene sclareol
    • S Van den Brule A Muller AJ Fleming CC Smart 2002 The ABC transporter SpTUR2 confers resistance to the antifungal diterpene sclareol Plant J 30 649 662
    • (2002) Plant J , vol.30 , pp. 649-662
    • Van Den Brule, S.1    Muller, A.2    Fleming, A.J.3    Smart, C.C.4
  • 47
    • 0035019470 scopus 로고    scopus 로고
    • Fungal ABC proteins: Pleiotropic drug resistance, stress response and cellular detoxification
    • H Wolfger YM Mamnun K Kuchler 2001 Fungal ABC proteins: pleiotropic drug resistance, stress response and cellular detoxification Res Microbiol 152 375 389
    • (2001) Res Microbiol , vol.152 , pp. 375-389
    • Wolfger, H.1    Mamnun, Y.M.2    Kuchler, K.3
  • 48
    • 10744228998 scopus 로고    scopus 로고
    • Genomic approach to abscisic acid- and gibberellin-responsive genes in rice
    • J Yazaki N Kishimoto Y Nagata 2003 Genomic approach to abscisic acid- and gibberellin-responsive genes in rice DNA Res 10 249 261
    • (2003) DNA Res , vol.10 , pp. 249-261
    • Yazaki, J.1    Kishimoto, N.2    Nagata, Y.3
  • 49
    • 3843145393 scopus 로고    scopus 로고
    • Transcriptional profiling of genes responsive to abscisic acid and gibberellin in rice: Phenotyping and comparative analysis between rice and Arabidopsis
    • J Yazaki Z Shimatani A Hashimoto 2004 Transcriptional profiling of genes responsive to abscisic acid and gibberellin in rice: phenotyping and comparative analysis between rice and Arabidopsis Physiol Genomics 17 87 100
    • (2004) Physiol Genomics , vol.17 , pp. 87-100
    • Yazaki, J.1    Shimatani, Z.2    Hashimoto, A.3
  • 50
    • 0037023384 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza sativa L. spp. Indica)
    • J Yu S Hu J Wang 2002 A draft sequence of the rice genome (Oryza sativa L. spp. Indica) Science 296 79 92
    • (2002) Science , vol.296 , pp. 79-92
    • Yu, J.1    Hu, S.2    Wang, J.3
  • 51
    • 3843081731 scopus 로고    scopus 로고
    • Functional identification of rice syn-copalyl diphosphate synthase and its role in initiating biosynthesis of diterpenoid phytoalexin/allelopathic natural products
    • M Xu ML Hillwig S Prisic RM Coates RJ Peters 2004 Functional identification of rice syn-copalyl diphosphate synthase and its role in initiating biosynthesis of diterpenoid phytoalexin/allelopathic natural products Plant J 39 309 318
    • (2004) Plant J , vol.39 , pp. 309-318
    • Xu, M.1    Hillwig, M.L.2    Prisic, S.3    Coates, R.M.4    Peters, R.J.5


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