Gypsy endogenous retrovirus maintains potential infectivity in several species of Drosophilids

BMC Evolutionary Biology

Volumn 8, Issue 1, 2008, Pages

  Llorens, Jose V ^a   Clark, Jonathan B ^b   Martínez Garay, Isabel ^a   Soriano, Sirena ^a   De Frutos, Rosa ^a   Martínez Sebastián, María J ^a  

^a UNIVERSITY OF VALENCIA   (Spain)

^b WEBER STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; DROSOPHILA MELANOGASTER; ENVELOPE GENE; GENE EXPRESSION; GENE REPRESSION; GENE SEQUENCE; GYPSY MOTH; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; RETROVIRUS; VIRUS INFECTIVITY; ANIMAL; BIOLOGICAL MODEL; DNA SEQUENCE; DROSOPHILA; ENDOGENOUS RETROVIRUS; GENE; GENETICS; GENOME; MOLECULAR CLONING; MOLECULAR EVOLUTION; PROTEIN SYNTHESIS; RETROPOSON; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; STATISTICAL MODEL; VIROLOGY;

DROSOPHILA MELANOGASTER; DROSOPHILIDAE; OBSCURA GROUP;

DNA; MESSENGER RNA; VIRUS ENVELOPE PROTEIN;

ANIMALS; CLONING, MOLECULAR; DNA; DROSOPHILIDAE; ENDOGENOUS RETROVIRUSES; EVOLUTION, MOLECULAR; GENES, ENV; GENES, INSECT; GENOME, INSECT; LIKELIHOOD FUNCTIONS; MODELS, GENETIC; OPEN READING FRAMES; PHYLOGENY; PROTEIN BIOSYNTHESIS; RETROELEMENTS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; VIRAL ENVELOPE PROTEINS;

EID: 56549122660     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-8-302     Document Type: Article

References (29)

1. Retroviruses in invertebrates: the gypsy retrotransposon is apparently an infectious retrovirus of Drosophila melanogaster. A Kim C Terzian P Santamaria A Pelisson N Purd'homme A Bucheton, Proceedings of the National Academy of Sciences of the United States of America 1994 91 4 1285 1289 8108403 10.1073/pnas.91.4.1285
2. Gypsy transposition correlates with the production of a retroviral envelope-like protein under the tissue-specific control of the Drosophila flamenco gene. A Pélisson SU Song N Prud'homme PA Smith A Bucheton VG Corces, The EMBO journal 1994 13 18 4401 4411 7925283
3. About the origin of retroviruses and the co-evolution of the gypsy retrovirus with the Drosophila flamenco host gene. A Pélisson L Teysset F Chalvet A Kim N Prud'homme C Terzian A Bucheton, Genetica 1997 100 1-3 29 37 10.1023/A:1018336303298 9440256
4. Comparative and functional studies of Drosophila species invasion by the gypsy endogenous retrovirus. L Mejlumian A Pelisson A Bucheton C Terzian, Genetics 2002 160 1 201 209 11805056
5. Distribution of Drosophila melanogaster transposable element sequences in species of the obscura group. R de Frutos KR Peterson MG Kidwell, Chromosoma 1992 101 5-6 293 300 10.1007/BF00346008 1315668
6. Evolution of the Gypsy endogenous retrovirus in the Drosophila melanogaster subgroup. C Terzian C Ferraz J Demaille A Bucheton, Mol Biol Evol 2000 17 6 908 914 10833197
7. Evolution of gypsy endogenous retrovirus in the Drosophila obscura species group. RP Vázquez-Manrique M Hernández MJ Martínez-Sebastián R de Frutos, Mol Biol Evol 2000 17 8 1185 1193 10908638
8. Evolutionary patterns of the gypsy and bilbo retrotransposon families in the Drosophila species of the obscura group. MJ Martínez-Sebastián M Hernández B Mejias ME Gas A Pérez L Pascual R de Frutos, Molecular phylogenetics and evolution 2002 25 2 254 266 10.1016/S1055-7903(02) 00257-9
9. Complex evolution of gypsy in Drosophilid species. F Heredia EL Loreto VL Valente, Molecular biology and evolution 2004 21 10 1831 1842 10.1093/molbev/msh183
10. Molecular structure of a gypsy element of Drosophila subobscura (gypsyDs) constituting a degenerate form of insect retroviruses. TM Alberola R de Frutos, Nucleic acids research 1996 24 5 914 923 8600460 10.1093/nar/24.5.914
11. Long terminal repeat retrotransposons jump between species. AJ Flavell, Proceedings of the National Academy of Sciences of the United States of America 1999 96 22 12211 12212 10535896 10.1073/pnas.96.22.12211
12. Multiple events of horizontal transfer of the Minos transposable element between Drosophila species. LM de Almeida CM Carareto, Molecular phylogenetics and evolution 2005 35 3 583 594 10.1016/j.ympev.2004.11.026
13. Evidence for recent horizontal transfer of gypsy-homologous LTR-retrotransposon gtwin into Drosophila erecta followed by its amplification with multiple aberrations. AP Kotnova IA Glukhov NN Karpova VB Salenko NV Lyubomirskaya YV Ilyin, Gene 2007 396 1 39 45 10.1016/j.gene.2007.02.019 17459613
14. High rate of horizontal transfer of transposable elements in Drosophila. A Sánchez-Gracia X Maside B Charlesworth, Trends Genet 2005 21 4 200 203 10.1016/j.tig.2005.02.001 15797612
15. Factors that affect the horizontal transfer of transposable elements. JC Silva EL Loreto JB Clark, Current issues in molecular biology 2004 6 1 57 71 14632259
16. Lateral transfer in natural populations of eukaryotes. MG Kidwell, Annual review of genetics 1993 27 235 256 10.1146/annurev.ge.27.120193.001315 8122903
17. A phylogenetic perspective on P transposable element evolution in Drosophila. JB Clark MG Kidwell, Proceedings of the National Academy of Sciences of the United States of America 1997 94 21 11428 11433 9326626 10.1073/pnas.94.21.11428
18. Molecular evolution of P transposable elements in the Genus drosophila. II. The obscura species group. J García-Planells N Paricio JB Clark R de Frutos MG Kidwell, Journal of molecular evolution 1998 47 3 282 291 10.1007/PL00006386 9732455
19. Cloning and analysis of the mobile element gypsy from D. virilis. LJ Mizrokhi AM Mazo, Nucleic acids research 1991 19 4 913 916 1708127 10.1093/nar/19.4.913
20. Evolution of the Drosophila obscura species group inferred from the Gpdh and Sod genes. E Barrio FJ Ayala, Molecular phylogenetics and evolution 1997 7 1 79 93 10.1006/mpev.1996.0375
21. Reevaluation of phylogeny in the Drosophila obscura species group based on combined analysis of nucleotide sequences. PM O'Grady, Molecular phylogenetics and evolution 1999 12 2 124 139 10.1006/mpev.1998.0598
22. Phylogeny of the subgenus sophophora (Diptera: drosophilidae) based on combined analysis of nuclear and mitochondrial sequences. PM O'Grady MG Kidwell, Molecular phylogenetics and evolution 2002 22 3 442 453 10.1006/mpev.2001.1053
23. Evolution and phylogeny of insect endogenous retroviruses. C Terzian A Pelisson A Bucheton, BMC evolutionary biology 2001 1 3 11591216 10.1186/1471-2148-1-3
24. Flamenco, a gene controlling the gypsy retrovirus of Drosophila melanogaster. N Prud'homme M Gans M Masson C Terzian A Bucheton, Genetics 1995 139 2 697 711 7713426
25. Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy. H Akashi, Genetics 1994 136 3 927 935 8005445
26. Multiple invasions of Errantivirus in the genus Drosophila. A Ludwig VL Valente EL Loreto, Insect molecular biology 2008 17 2 113 124 10.1111/j.1365-2583.2007.00787.x 18353101
27. Automated phylogenetic detection of recombination using a genetic algorithm. SL Kosakovsky Pond D Posada MB Gravenor CH Woelk SD Frost, Molecular biology and evolution 2006 23 10 1891 1901 10.1093/molbev/msl051
28. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. K Tamura J Dudley M Nei S Kumar, Molecular biology and evolution 2007 24 8 1596 1599 10.1093/molbev/msm092
29. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. M Nei T Gojobori, Mol Biol Evol 1986 3 5 418 426 3444411