Molecular phylogeny of Collembola inferred from ribosomal RNA genes

Molecular Phylogenetics and Evolution

Volumn 49, Issue 3, 2008, Pages 728-735

  Xiong, Yan ^a,b   Gao, Yan ^a   Yin, Wen ying ^a   Luan, Yun xia ^a  

^a INSTITUTE OF PLANT PHYSIOLOGY AND ECOLOGY   (China)

^b INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

Author keywords

18S rRNA gene; 28S rRNA gene; Collembola; Phylogeny

Indexed keywords

RNA 18S; RNA 28S;

ANIMAL; ARTHROPOD; ARTICLE; BAYES THEOREM; CHINA; CLASSIFICATION; DNA SEQUENCE; GENETICS; MOLECULAR EVOLUTION; PHYLOGENY; RNA GENE; SEQUENCE ALIGNMENT; STATISTICAL MODEL;

ANIMALS; ARTHROPODS; BAYES THEOREM; CHINA; EVOLUTION, MOLECULAR; GENES, RRNA; LIKELIHOOD FUNCTIONS; PHYLOGENY; RNA, RIBOSOMAL, 18S; RNA, RIBOSOMAL, 28S; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

COLLEMBOLA; ENTOMOBRYOIDEA; HEXAPODA; HYPOGASTRURIDAE; NEANURIDAE; NEELIPLEONA; ONCOPODURIDAE; SMINTHURIDAE; SMINTHURIDIDAE; SYMPHYPLEONA; TOMOCERIDAE;

EID: 56549112096     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2008.09.007     Document Type: Article

References (50)

1. Bitsch C., and Bitsch J. Phylogenetic relationships of basal hexapods among the mandibulate arthropods: a cladistic analysis based on comparative morphological characters. Zool. Scr. 33 (2004) 511-550
2. Börner C. Zur Systematik der Hexapoden. Zool. Anz. 27 (1904) 511-533
3. Börner C. Das system der collembolen, nebst beschreibung neuer collembolen des hamburger naturhistorischen museums. Mitt. Naturh. Mus. Hamburg 23 (1906) 147-188
4. Börner, C., 1906b. Collembola Symphypleona Fam. Neelidae. In: Wytsman, P. (Ed.), Genera Insectorum. Fasc. 45, Bruxelles, pp. 1-5.
5. Bonet F. Sobre la clasificación de los Oncopoduridae (Collembola), con descripción de species nuevas. Sobretiro de Los Anales De La Escuela Nacional De Ciencias Biologicas III (1945) 127-153
6. Bretfeld, G., 1999. Symphypleona. In: Dunger, W. (Ed.), Synopses on Palaearctic Collembola, vol. 2, Staatliches Museum für Naturkunde Görlitz, pp. 1-318.
7. Cassagnau, P., 1971. La phylogénie des Collemboles à la lumière des structures endocrines rétrocérébrales. In: I Symposio Internacional Zoolfilogenia Salamanca: Facultad de Ciencias, Universidad de Salamanca, pp. 333-349.
8. Christian, E., 1987. U.-Kl.: Collembola (Springschwänze). In: Catalogus Faunae Austriae. Teil Xll a, Österreichische Akademie Wissenschaften, Wien, pp.1-83.
9. Christiansen K., and Bellinger P. The Collembola of North America North of the Rio Grand (1980-1981), Grinnell College, Grinnell Iowa pp. 1-1322
10. Christiansen K., and Bellinger P. The Collembola of North America North of the Rio Grande, A Taxonomic Analysis (1998), Grinnell College, Iowa pp. 1-1520
11. Deharveng L. Recent advances in Collembola systematics. Pedobiologia 48 (2004) 415-433
12. Dell'Ampio E., Carapelli A., and Frati F. Secondary structure and sequence variation of the 28S rRNA gene in the Neanuridae and its utility as a phylogenetic marker. Pedobiologia 46 (2002) 274-283
13. D'Haese C.A. Were the first springtails semi-aquatic? A phylogenetic approach by means of 28S rDNA and optimization alignment. Proc. R. Soc. Lond. B 269 (2002) 1143
14. D'Haese C.A. Morphological appraisal of Collembola phylogeny with special emphasis on Poduromorpha and a test of the aquatic origin hypothesis. Zoo. Scr. 32 (2003) 563-586
15. D'Haese C.A. Homology and morphology in Poduromorpha (Hexapoda, Collembola). Eur. J. Entomol. 101 (2003) 385-407
16. Frati F., Simon C., Sullivan J., and Swofford D.L. Evolution of the mitochondrial cytochrome oxidase II gene in Collembola. J. Mol. Evol. 44 (1997) 143-158
17. Frati F., and Dell'Ampio E. Molecular phylogeny of three subfamilies of the Neanuridae (Insecta, Collembola) and the position of the Antarctic species Friesea grisea Schäffer. Pedobiologia 44 (2000) 342-360
18. Fanciulli P.P., Melegari D., Carapelli A., Frati F., and Dallai R. Population structure, gene flow and evolutionary relationships in four species of genera Tomocerus and Pogonognathellus (Collembola, Tomoceridae). Biol. J. Linn. Soc. Lond. 70 (2000) 221-223
19. Giribet G., Edgecombe G.D., Carpenter J.M., D'Haese C.A., and Wheeler W.C. Is Ellipura monophyletic? A combined analysis of basal hexapod relationships with emphasis on the origin of insects. Org. Divers. Evol. 4 (2004) 319-340
20. Giribet G., Edgecombe G.D., and Wheeler W.C. Arthropod phylogeny based on eight molecular loci and morphology. Nature 413 (2001) 157-161
21. Gloor G.B., Preston C.R., Johnson-Schlitz D.M., Nassif N.A., Phillis R.W., Benz W.K., Robertson H.M., and Engels W.R. Type I repressors of P element mobility. Genetics 135 (1993) 81-95
22. Gutell R.R. Collection of small subunit (16S- and 16S-like) ribosomal RNA structures. Nucleic Acids Res. 22 (1994) 3502-3507
23. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids. Symp. Ser. 41 (1999) 95-98
24. Hennig W. Insect Phylogeny (1981), John Wiley, New York
25. Hillis D.M., and Bull J.J. An empirical test of bootstrapping as a method for addressing confidence in phylogenetic analysis. Syst. Biol. 42 (1993) 182-192
26. Hopkin S.P. Biology of the Springtails (Insecta: Collembola) (1997), Oxford University Press, Oxford
27. Hopkin S.P. Collembola: the most abundant insects on earth. Antenna 22 (1998) 117-121
28. Huelsenbeck J.P., and Ronquist F. Mrbayes: Bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
29. Janssens, F. 2007. Checklist of the Collembola: note on the collembolan ordinal morphogenetic relationships. In: Bellinger, P.F., Christiansen, K.A., Janssens, F., 1996-2007. Checklist of the Collembola of the World. Available from: .
30. Lee B.H., and Kim J.T. Systematic study on some interstitial Collembola (Insecta) from sand dunes of Korean western coast. Korean J. Syst. Zool. 10 (1994) 207-215
31. Lee B.H., and Thibaud J.M. New Family Gulgastruridae of Collembola (Insecta) based on morphological, ecobiological and molecular data. Korean J. Biol. Sci. 2 (1998) 451-454
32. Luan Y.X., Mallatt J.M., Xie R.D., Yang Y.M., and Yin W.Y. The phylogenetic positions of the three basal-hexapod groups (Protura, Diplura, and Collembola) based on ribosomal RNA gene sequences. Mol. Biol. Evol. 22 (2005) 1579-1592
33. Luan Y.X., Yao Y.G., Xie R.D., Yang Y.M., Zhang Y.P., and Yin W.Y. Analysis of 18S rRNA gene of Octostigma sinensis (Projapygoidea: Octostigmatidae) supports the monophyly of Diplura. Pedobiologia 48 (2004) 453-459
34. Luan Y.X., Zhang Y.P., Yue Q.Y., Pang J.F., Xie R.D., and Yin W.Y. Ribosomal DNA gene and phylogenetic relationship of Diplura and lower hexapods. Sci. China Ser. C 46 (2003) 67-76
35. Mallatt J.M., Garey J.R., and Shultz J.W. Ecdysozoan phylogeny and Bayesian inference: first use of nearly complete 28S and 18S rRNA gene sequences to classify the arthropods and their kin. Mol. Phylogenet. Evol. 31 (2004) 178-191
36. Mallatt J., and Giribet G. Further use of nearly complete 28S and 18S rRNA genes to classify Ecdysozoa: 37 more arthropods and a kinorhynch. Mol. Phylogenet. Evol. 40 (2006) 772-794
37. Massoud Z. Contribution à la connaissance morphologique et systématique des Collemboles Neelidae. Revue d'Écologie et de Biologie du Sol 8 (1971) 195-198
38. Massoud Z. Essai de synthèse sur la phylogénie des Collemboles. Revue d'Ecologie et de Biologie du Sol 13 (1976) 241-252
39. Moen P., and Ellis W.N. Morphology and taxonomic position of Podura aquatica (Collembola). Entomol. Gener. 9 (1984) 193-204
40. Nardi F., Spinsanti G., Boore J.L., Carapelli A., Dallai R., and Frati F. Hexapoda origins: monophyletic or paraphyletic?. Science 299 (2003) 1887-1889
41. Palacios-Vargas J.G., and González V. Two new species of Deuterosminthurus (Bourletiellidae), epiphytic Collembola from the neotropical region with a key for the American species. Fla. Entomol. 78 (1995) 19-32
42. Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
43. Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
44. Salmon J.T. An index to the Collembola. Roy. Soc. NZ Bull. 7 (1964) 1-651
45. Schnare M.N., Damberger S.H., Gray M.W., and Gutell R.R. Comprehensive comparison of structural characteristics in eukaryotic cytoplasmic large subunit (23S-like) ribosomal RNA. J. Mol. Evol. 256 (1996) 701-719
46. Swofford D.L. PAUP*: phylogenetic analysis using parsimony (*and other methods) Version 4.0b1.0 (2002), Sinauer Associates, Sunderland, Massachusetts
47. Yin W.Y. A new idea on phylogeny of Protura with approach to its origin and systematic position. Sci. Sin. Ser. B XXVII (1984) 149-160
48. Yin W.Y., Xie R.D., and Luan Y.X. On the validity of the class Ellipura (= Parainsecta) (Hexapoda) based on the phylogenetic relationship between Collembola and Protura. Acta Entomol. Sinica 47 (2004) 821-829
49. Yosii R. Critical check list of the Japanese species of Collembola. Contr. Biol. Lab. Kyoto Univ. 25 (1977) 141-170
50. Zwickl, D.J., 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation, The University of Texas at Austin.