A general SNP-based molecular barcode for Plasmodium falciparum identification and tracking

Malaria Journal

Volumn 7, Issue , 2008, Pages

  Daniels, Rachel ^a   Volkman, Sarah K ^b,c   Milner, Danny A ^c,d   Mahesh, Nira ^b   Neafsey, Daniel E ^a   Park, Daniel J ^a   Rosen, David ^b   Angelino, Elaine ^e   Sabeti, Pardis C ^a   Wirth, Dyann F ^b   Wiegand, Roger C ^a  

^a BROAD INSTITUTE OF MIT AND HARVARD   (United States)

^b HARVARD SCHOOL OF PUBLIC HEALTH   (United States)

^c SIMMONS COLLEGE   (United States)

^d BRIGHAM AND WOMEN S HOSPITAL   (United States)

^e HARVARD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTOZOAL DNA;

ARTICLE; BLOOD SAMPLING; CONTROLLED STUDY; DNA BARCODING; GENE FREQUENCY; GENE SEQUENCE; GENOTYPE; LEUKOCYTE; METHODOLOGY; MICROORGANISM DETECTION; PARASITE CULTIVATION; PARASITE IDENTIFICATION; PLASMODIUM FALCIPARUM; SINGLE NUCLEOTIDE POLYMORPHISM; ANIMAL; CLASSIFICATION; COMPARATIVE STUDY; DNA FINGERPRINTING; EVALUATION; GENETICS; MICROARRAY ANALYSIS;

ANIMALS; DNA FINGERPRINTING; DNA, PROTOZOAN; GENOTYPE; MICROARRAY ANALYSIS; PLASMODIUM FALCIPARUM; POLYMORPHISM, SINGLE NUCLEOTIDE;

EID: 56349168406     PISSN: None     EISSN: 14752875     Source Type: Journal    
DOI: 10.1186/1475-2875-7-223     Document Type: Article

References (13)

1. Global Fund to Fight AIDS, Tuberculosis and Malaria: The global malaria situation: current tools for prevention and control. http://ftp.who.int/gb/ archive/pdf_files/WHA55/ea55id6.pdf
2. A genetic map and recombination parameters of the human malaria parasite Plasmodium falciparum. XFM Su Y Huang CQ Huynh A Liu J You JC Wootton TE Wellems, Science 1999 286 5443 1351 1353 10.1126/science.286.5443.1351 10558988
3. Genotyping of Plasmodium falciparum isolates by the polymerase chain reaction and potential uses in epidemiological studies. SSN Viriyakosol C Petcharapirat P Petcharapirat W Jarra S Thaithong KN Brown G Snounou, Bull World Health Organ 1995 73 1 85 95 7704931
4. A polymerase chain reaction/ligase detection reaction fluorescent microsphere assay to determine Plasmodium falciparum MSP-119 haplotypes. AE Dent CT Yohn PA Zimmerman J Vulule JW Kazura AM Moormann, Am J Trop Med Hyg 2007 77 2 250 255 17690395
5. The use of genotyping in antimalarial clinical trials: a systematic review of published studies from 1995-2005. WJ Collins B Greenhouse PJ Rosenthal G Dorsey, Malar J 2006 5 122 17169157 10.1186/1475-2875-5-122
6. A high-throughput method for quantifying alleles and haplotypes of the malaria vaccine candidate Plasmodium falciparum merozoite surface protein-1 19 kDa. SL Takala DL Smith OC Stine D Coulibaly MA Thera OK Doumbo CV Plowe, Malar J 2006 5 31 16626494 10.1186/1475-2875-5-31
7. Estimating true antimalarial efficacy by heteroduplex tracking assay in patients with complex Plasmodium falciparum infections. JJ Kwiek AP Alker EC Wenink M Chaponda LV Kalilani SR Meshnick, Antimicrob Agents Chemother 2007 51 2 521 527 17116685 10.1128/AAC.00902-06
8. Twelve microsatellite markers for characterization of Plasmodium falciparum from finger-prick blood samples. TJ Anderson XZ Su M Bockarie M Lagog KP Day, Parasitology 1999 119 Pt 2 113 125 10.1017/S0031182099004552 10466118
9. VALIDATION OF MICROSATELLITE MARKERS FOR USE IN GENOTYPING POLYCLONAL PLASMODIUM FALCIPARUM INFECTIONS. B Greenhouse A Myrick C Dokomajilar JM Woo EJ Carlson PJ Rosenthal G Dorsey, Am J Trop Med Hyg 2006 75 5 836 842 17123974
10. A genome-wide map of diversity in Plasmodium falciparum. SK Volkman PC Sabeti D DeCaprio DE Neafsey SF Schaffner DA Milner Jr JP Daily O Sarr D Ndiaye O Ndir S Mboup MT Duraisingh A Lukens A Derr N Stange-Thomann S Waggoner R Onofrio L Ziaugra E Mauceli S Gnerre DB Jaffe J Zainoun RC Wiegand BW Birren DL Hartl JE Galagan ES Lander DF Wirth, Nat Genet 2007 39 1 113 119 10.1038/ng1930 17159979
11. Genome-wide variation and identification of vaccine targets in the Plasmodium falciparum genome. J Mu P Awadalla J Duan KM McGee J Keebler K Seydel GA McVean XZ Su, Nat Genet 2007 39 1 126 130 10.1038/ng1924 17159981
12. Genome variation and evolution of the malaria parasite Plasmodium falciparum. DC Jeffares A Pain A Berry AV Cox J Stalker CE Ingle A Thomas MA Quail K Siebenthall AC Uhlemann S Kyes S Krishna C Newbold ET Dermitzakis M Berriman, Nat Genet 2007 39 1 120 125 10.1038/ng1931 17159978
13. High-resolution haplotype structure in the human genome. MJ Daly JD Rioux SF Schaffner TJ Hudson ES Lander, Nat Genet 2001 29 2 229 232 10.1038/ng1001-229 11586305