16S-ribosomal DNA to diagnose culture-negative endocarditis

Current Infectious Disease Reports

Volumn 10, Issue 4, 2008, Pages 280-286

  Madico, Guillermo E ^a   Rice, Peter A ^b  

^a BOSTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC AGENT; BACTERIAL DNA; BACTERIAL RNA; DNA 16S; RNA 16S;

AMPLICON; BACTERIAL ENDOCARDITIS; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BLOOD CULTURE; BLOOD SAMPLING; DIAGNOSTIC ACCURACY; DNA EXTRACTION; FALSE NEGATIVE RESULT; GENE SEQUENCE; HISTOPATHOLOGY; HUMAN; NONHUMAN; POLYMERASE CHAIN REACTION; REVIEW; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS;

EID: 56349114525     PISSN: 15233847     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11908-008-0046-3     Document Type: Review

References (50)

1. Syed FF, Millar BC, Prendergast BD: Molecular technology in context: a current review of diagnosis and management of infective endocarditis. Prog Cardiovasc Dis 2007, 50:181-197.
2. Prendergast BD: The changing face of infective endocarditis. Heart 2006, 92:879-885.
3. Von Reyn CF, Levy BS, Arbeit RD, et al.: Infective endocarditis: an analysis based on strict case definitions. Ann Intern Med 94:505-518.
4. Durack DT, Lukes AS, Bright DK: New criteria for diagnosis of infective endocarditis: utilization of specific echocardiographic findings. Duke endocarditis service. Am J Med 1994, 96:200-209.
5. Brouqui P, Raoult D: New insight into the diagnosis of fastidious bacterial endocarditis. FEMS Immunol Med Microbiol 2006, 47:1-13.
6. Li JS, Sexton DJ, Mick N, et al.: Proposed modifications to the Duke criteria for the diagnosis of infective endocarditis. Clin Infect Dis 2000, 30:633-638.
7. Rice PA, Madico GE: Polymerase chain reaction to diagnose infective endocarditis: will it replace blood cultures? Circulation 2005, 111:1352-1354.
8. Lamas CC, Eykyn SJ: Suggested modifications to the Duke criteria for the clinical diagnosis of native valve and prosthetic valve endocarditis: analysis of 118 pathologically proven cases. Clin Infect Dis 1997, 25:713-719.
9. Habib G, Derumeaux G, Avierinos JF, et al.: Value and limitations of the Duke criteria for the diagnosis of infective endocarditis. J Am Coll Cardiol 1999, 33:2023-2029.
10. Shapiro SM, Young E, De Guzman S, et al.: Transesophageal echocardiography in diagnosis of infective endocarditis. Chest 1994, 105:377-382.
11. Fowler VG, Li J, Corey GR, et al.: Role of echocardiography in evaluation of patients with Staphylococcus aureus bacteremia: experience in 103 patients. J Amer Col Cardiol 1997, 30:1072-1078.
12. Koegelenberg CF, Doubell AF, Orth H, Reuter H: Infective endocarditis: improving the diagnostic yield. Cardiovasc J S Afr 2004, 15:14-20.
13. Tariq M, Alam M, Munir G, et al.: Infective endocarditis: a five-year experience at a tertiary care hospital in Pakistan. Int J Infect Dis 2004, 8:163-170.
14. Goldenberger D, Kunzli A, Vogt P, et al.: Molecular diagnosis of bacterial endocarditis by broad-range PCR amplification and direct sequencing. J Clin Microbiol 1997, 35:2733-2739.
15. Lamas CC, Eykyn SJ: Blood culture negative endocarditis: analysis of 63 cases presenting over 25 years. Heart 2003, 89:258-262.
16. Werner M, Andersson R, Olaison L, Hogevik H: A clinical study of culture-negative endocarditis. Medicine (Baltimore) 2003, 82:263-273.
17. Tunkel AR, Kaye D: Endocarditis with negative blood cultures. N Engl J Med 1992, 326:1215-1217.
18. Fournier PE, Lelievre H, Eykyn SJ, et al.: Epidemiologic, clinical characteristics of Bartonella quintana and Bartonella henselae endocarditis: a study of 48 patients. Medicine (Baltimore) 2001, 80:245-251.
19. Maurin M, Raoult D: Bartonella (Rochalimaea) quintana infections. Clin Microbiol 1996, 9:273-292.
20. Lang S, Watkin RW, Lambert PA, et al.: Detection of bacterial DNA in cardiac vegetations by PCR after the completion of antimicrobial treatment for endocarditis. Clin Microbiol Infect 2004, 10:579-581.
21. Gauduchon V, Chalabreysse L, Etienne J, et al.: Molecular diagnosis of infective endocarditis by PCR amplification and direct sequencing of DNA from valve tissue. J Clin Microbiol 2003, 41:763-766.
22. Casalta JP, Habib G, La Scola B, et al.: Molecular diagnosis of Granulicatella elegans on the cardiac valve of a patient with culture-negative endocarditis. J Clin Microbiol 2002, 40:1845-1847.
23. Mueller NJ, Kaplan V, Zbinden R, Altwegg M: Diagnosis of Cardiobacterium hominis endocarditis by broad-range PCR from arterio-embolic tissue. Infection 1999, 27:278-279.
24. Rothman RE, Majmudar MD, Kelen GD, et al.: Detection of bacteremia in emergency department patients at risk for infective endocarditis using universal 16S rRNA primers in a decontaminated polymerase chain reaction assay. J Infect Dis 2002, 186:1677-1681.
25. Greisen K, Loeffelholz M, Purohit A, Leong D: PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid. J Clin Microbiol 1994, 32:335-351.
26. Meier A, Persing D, Finken M, Bottger EC: Elimination of contaminating DNA within polymerase chain reaction reagents: implication for a general approach to detection of uncultured pathogens. J Clin Microbiol 1993, 31:646-652.
27. Relman DA, Loutit JS, Schmidt TM, et al.: The agent of bacillary angiomatosis: an approach to the identification of uncultured pathogens. N Engl J Med 1990, 323:1573-1580.
28. Anderson BE, Dawson JE, Jones DC, Wilson KH: Ehrlichia chaffeensis, a new species associated with human ehrlichiosis. J Clin Microbiol 1991, 29:2838-2842.
29. Woese CR, Magrun LJ, Gupta R, et al.: Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence. Nucleic Acids Res 1980, 8:2275-2293.
30. Corless CE, Guiver M, Borrow R, et al.: Contamination and sensitivity issues with a real-time universal 16S rRNA PCR. J Clin Microbiol 2000, 38:1747-1752.
31. Podglajen I, Bellery F, Poyart C, et al.: Comparative molecular and microbiologic diagnosis of bacterial endocarditis. Emerg Infect Dis 2003, 9:1543-1547.
32. Millar B, Moore J, Mallon P, et al.: Molecular diagnosis of infective endocarditis - a new Duke's criterion. Scand J Infect 2001, 33:673-680.
33. Bosshard PP, Kronenberg A, Zbinden R, et al.: Etiologic diagnosis of infective endocarditis by broad-range polymerase chain reaction: a 3-year experience. Clin Infect Dis 2003, 37:167-172.
34. Greub G, Lepidi H, Rovery C, et al.: Diagnosis of infectious endocarditis in patients undergoing valve surgery. Am J Med 2005, 118:230-238.
35. Breitkopf C, Hammel D, Scheld HH, et al.: Impact of a molecular approach to improve the microbiological diagnosis of infective heart valve endocarditis. Circulation 2005, 111:1415-1421.
36. Qin X, Urdahl KB: PCR and sequencing of independent genetic targets for the diagnosis of culture negative bacterial endocarditis. Diagn Microbiol Infect Dis 2001, 40:145-149.
37. Jaspers E, Overmann J: Ecological significance of microdiversity: identical 16S rRNA gene sequences can be found in bacteria with highly divergent genomes and ecophysiologies. Appl Environ Microbiol 2004, 70:4831-4939.
38. Wilson KH, Blitchington RB, Greene RC: Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction. J Clin Microbiol 1990, 28:1942-1946.
39. Houpikian P, Raoult D: Diagnostic methods. Current best practices and guidelines for identification of difficult-to-culture pathogens in infective endocarditis. Cardial Clin 2003, 21:207-217.
40. Brouqui P, Raoult D: Endocarditis due to rare and fastidious bacteria. Clin Microbiol 2001, 14:177-207.
41. Kotilainen P, Jalava J, Meurman O, et al.: Diagnosis of meningococcal meningitis by broad-range bacterial PCR with cerebrospinal fluid. J Clin Microbiol 1998, 36:2205-2209.
42. Lang S, Watkin RW, Lambert PA, et al.: Evaluation of PCR in the molecular diagnosis of endocarditis. J Infect 2004, 48:269-275.
43. Marín M, Muñoz P, Sánchez M, et al.: Molecular diagnosis of infective endocarditis by real-time broad-range polymerase chain reaction (PCR) and sequencing directly from heart valve tissue. Medicine (Baltimore) 2007, 86:195-202.
44. Grijalva M, Horvath R, Dendis M, et al.: Molecular diagnosis of culture negative infective endocarditis: clinical validation in a group of surgically treated patients. Heart 2003, 89:263-268.
45. Kotilainen P, Heiro M, Jalava J, et al.: Aetiological diagnosis of infective endocarditis by direct amplification of rRNA genes from surgically removed valve tissue. An 11-year experience in a Finnish teaching hospital. Ann Med 2006, 38:263-273.
46. Hilali F, Saulnier P, Chachaty E, Andremont A: Decontamination of polymerase chain reaction reagents for detection of low concentration of 16S rRNA genes. Mol Biotechnol 1997, 7:207-216.
47. Carroll NM, Adamson P, Okhravi N: Elimination of bacterial DNA from Taq DNA polymerases by restriction endonuclease digestion. J Clin Microbiol 1999, 37:3402-3404.
48. Branger S, Casalta JP, Habib G, et al.: Streptococcus pneumoniae endocarditis: persistence of DNA on heart valve material 7 years after infectious episode. J Clin Microbiol 2003, 41:4435-4437.
49. Rovery C, Greub G, Lepidi H, et al.: PCR detection of bacteria on cardiac valves of patients with treated bacterial endocarditis. J Clin Microbiol 2005, 43:163-167.
50. van Doorn R, Szemes M, Bonants P, et al.: Quantitative multiplex detection of plant pathogens using a novel ligation probe-based system coupled with universal, high-throughput real-time PCR on OpenArrays. BMC Genomics 2007, 8:276.