Biogeochemical cyclic activity of bacterial arsB in arsenic-contaminated mines

Journal of Environmental Sciences

Volumn 20, Issue 11, 2008, Pages 1348-1355

  CHANG, Jin Soo ^a   REN, Xianghao ^a   KIM, Kyoung Woong ^a  

^a Gwangju Institute of Science and Technology (GIST)   (South Korea)

Author keywords

arsB influx efflux pump; arsenic resistance bacteria; arsenic resistance system (ars) biogeochemical

Indexed keywords

ABANDONED MINES; AMINO ACIDS; BACTERIOLOGY; BINDING ENERGY; BIOGEOCHEMISTRY; BIOREMEDIATION; CONTAMINATION; ECOLOGY; LEAD; LEAD MINES; MINES; NONMETALS; SHELTERS (FROM ATTACK); SOILS;

ARSB INFLUX/EFFLUX PUMP; ARSENIC RESISTANCE BACTERIA; ARSENIC RESISTANCE SYSTEM (ARS) BIOGEOCHEMICAL; ARSENIC RESISTANCES; ARSENIC SPECIES; BINDING AFFINITIES; BINDING MECHANISMS; BIOGEOCHEMICAL CYCLES; GEOMICROBIOLOGY; HELICAL STRUCTURES; MINE SOILS; OXIDIZING BACTERIA; PARTIAL SEQUENCES; PSEUDOMONAS PUTIDA; TRIPHOSPHATE;

ARSENIC;

ARSENIC; BACTERIAL PROTEIN;

ABANDONED MINE; ARSENIC; BACTERIUM; BIOGEOCHEMICAL CYCLE; BIOREMEDIATION; CONTAMINATED LAND; ENZYME ACTIVITY; GEOMICROBIOLOGY;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; BACTERIUM; BIOREMEDIATION; CHEMICAL STRUCTURE; CHEMISTRY; GENETICS; GENOTYPE; METABOLISM; MINING; MOLECULAR GENETICS; OXIDATION REDUCTION REACTION; POLLUTANT; POLYMERASE CHAIN REACTION; PSEUDOMONAS PUTIDA; SEQUENCE ALIGNMENT;

AMINO ACID SEQUENCE; ARSENIC; BACTERIA; BACTERIAL PROTEINS; BIODEGRADATION, ENVIRONMENTAL; ENVIRONMENTAL POLLUTANTS; GENES, BACTERIAL; GENOTYPE; MINING; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; POLYMERASE CHAIN REACTION; PSEUDOMONAS PUTIDA; SEQUENCE ALIGNMENT;

BACTERIA (MICROORGANISMS); PSEUDOMONAS PUTIDA;

EID: 56149108721     PISSN: 10010742     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1001-0742(08)62232-9     Document Type: Article

References (47)

1. Bentley R., and Chasteen T.G. Microbial methylation of metalloids: arsenic, antimony, and bismuth. Microbiol Mol Biol Rev 66 (2002) 250-271
2. 422 in the metallocativation domain of the ArsA ATPase. J Biol Chem 271 (1996) 24465-24470
3. Broome-smith J.K., Baumbery S., and Stirling C.J. Transport of molecules across microbial membranes 58 (1999), Cambridge University Press, Symposium, New York 58-79
4. Bruhn D.F., Li J., Silver S., Roberta F., and Rosen B.P. The arsenical resistance operon of IncN plasmid R46. FEMS Microbiol Lett 139 (1996) 149-153
5. Chang J.S., Lee J.H., and Kim K.W. DNA sequence homology analysis of ars genes in arsenic-resistant bacteria. Biotechnol Bioprocess Eng 12 (2007) 380-389
6. Chang J.S., Kim Y.H., and Kim K.W. The ars genotype characterization of arsenic-resistant bacteria from arsenic-contaminated gold-silver mines in the Republic of Korea. Appl Microbiol Biotechnol 80 (2008) 155-165
7. Chang J.S., Yoon I.H., and Kim K.W. Isolation and ars detoxification of arsenite-oxidizing bacteria from abandoned arsenic-contaminated mines. J Microbiol Biotechnol 17 (2007) 812-821
8. Chen C.M., Misea T.K., Silver S., and Rosen B.P. Nucleotide sequence of the structural genes for an anion pump. The plasmid-encoded arsenical resistance operon. J Biol Chem 261 (1996) 15030-15038
9. Chen Y., and Rosen B.P. Metalloregulatory properties of the ArsD represser. J Biol Chem 272 (1997) 14257-14262
10. Dey S., and Rosen B.P. Dual mode of energy coupling by the oxyanion-translocating ArsB protein. J Bacterial 111 (1995) 385-389
11. Ji G.E., Harber A., Armes L.G., Chen C.M., Fuchs J.A., and Silver S. Arsenate reductase of Staphylococcus aureus plasmid pI258. Biochemistry 33 (1994) 7294-7299
12. Kostal J., Yang R., Wu C.H., Mulchandani A., and Chen W. Enhanced arsenic accumulation in engineered bacterial cells expressing ArsR. Appl Environ Microbiol 70 (2004) 4582-4587
13. Kurdi-Haidar B., Aebi S., Heath D., Enns R.E., Naredi P., Horn D.K., and Howell S. Isolation of the ATP-binding human homolog of the ars A component of the bacterial arsenite transporter. Genomics 36 (1996) 486-491
14. Kuroda M., Dey S., Sander O.I., and Rosen B.P. Alternate energy coupling of ArsB, the membrane subunit of the Ars anion-translocating ATPase. J Biol Chem 272 (1997) 326-331
15. Le X.C., Yalcin S., and Ma M. Speciation of submicrogram per liter levels of arsenic in water: On site species separation integrated with sample collection. Environ Sci Technol 34 (2002) 2342-2347
16. Lee S.J., Lee S.C., Choi S.H., Chung M.K., Rhie H.G., and Lee H.S. Arsenite-specific ATPase, on inhibition of cell division in Escherichia coli. J Microbiol Biotechnol 11 (2001) 825-830
17. Lin Y.F., Walsely A.R., and Rosen B.P. An arsenic metallochap-erone for an arsenic detoxification pump. Proc Nati Acad Sci USA 103 (2006) 15617-15622
18. 18 form an As(III)-binding site required for arsenic metallochaperone activity. J Biol Chem 282 (2007) 16783-16791
19. Lutfullah G., Khalil H.S., Amin F., and Azhar N. Low Oxygen affinity in reptilian hemoglobin D: prediction of residue interactions in geochelone caronaria HbD by homology modeling. Protein J 27 (2007) 141-150
20. Manafi M., Neifel K., and Bascomb S. Fluorgenetic and chro-mogenic substrates used in bacteria diagnostics. Microbiol Rev 55 (1991) 335-348
21. Macalady J., and Banfield J.F. Molecular geomicrobiology: genes and geochemical cycling. Earth Planet Sc Lett 209 (2002) 1-17
22. Malasarn D., Saltkov C.W., Cambell K.M., Santini J.M., Hering J.G., and Newman D.K. arrA is a reliable marker for As(V) respiration. Science 306 (2004) 455
23. Marti-Renom M.A., Stuart A.C., Fiser S.A., and Šali A. Comparative protein structure modeling of genes and genomes. Anna Rev Biophys Biomol Struct 19 (2000) 291-325
24. Meng Y.L., Liu Z., and Rosen B.P. As(III) and Sb(III) uptake by GIpF and efflux by ArsB in Escherichia coli. J Biol Chem 279 (2004) 18334-18341
25. Mukhopadhyay R., Rosen B.P., Phung L.T., and Silver S. Microbial arsenic: from geocycles to genes and enzymes. FEMS Microbiol Rev 26 (2002) 311-325
26. Newman D.K., and Banfield J.F. Geomicrobiology: how molecular-scale interactions underpin biogeochemical systems. Science 296 (2002) 1071-1077
27. Neyt C., Iriarte M., Thi V.H., and Cornelis G.R. Virulence and arsenic resistance in Yersiniae. J Bacterial 179 (1997) 612-619
28. Oremland R.S., Hoeft S.E., Santini J.M., Bano N., Hollibaugh R.A., and Hollibauh J.T. Anaerobic oxidation of arsenite in Mono Lake water and by a facultative, arsenite-oxidizing chemoautotroph, strain MLHE-1. Appl Environ Microbiol 68 (2002) 4795-4802
29. Oremland R.S., Kulp T.R., Blum J.S., Hoeft S.E., Baesman S., Miler L.G., and Stol J.F. A microbial arsenic cycle in a salt-saturated, extreme environment. Science 308 (2005) 1305-1308
30. Oremland R.S., Stolz J.F., and Hollibaugh J.T. The microbial arsenic cycle in Mono Lake, California. FEMS Microbiol Ecol 48 (2004) 15-27
31. Qin J., Rosen B.P., Zhang Y., Wang G., Franke S., and Rensing C. Arsenic detoxification and evolution of trmethylarsine gas by a microbial arsenite 5-adenosylmethionine methyltrans-ferase. Proc Nati Acad Sci USA 103 (2006) 2075-2080
32. Rosen B.P. Families of arsenic transporters. Trends Microbiol 1 (1999) 207-212
33. Rosen B.P., Bhattachrjee H., and Zhou T. Mechanism of the arsA ATPase. Biochmica et Biophysica Acta 1461 (1999) 207-215
34. Ruan X., Bhattacharjee H., and Rosen B.P. Cys-113 and Cys-422 form a high affinity metalloid binding site in the ArsA ATPase. J Biol Chem 281 (2006) 9925-9931
35. Saltikov C.W., Cifuentes A., Venkateswaran K., and Newman D.K. The ars detoxification system is advantageous but not required for As(V) respiration by the genetically tractable Shewanella species strain ANA-3. Appl Environ Microbiol 69 (2003) 2800-2809
36. Sambrook J., and Russel D.W. Molecular Cloning: A Laboratory Manual. 3rd ed. (2001), Cold Spring, Harbor Laboratory Press, Cold Spring Harbor, NY
37. Santini J.M., Sly L.I., Schnagl R.D., and Macy J.M. A new chemolithoautotrophic arsenite-oxidizing bacterium isolated from a gold mine: phylogenetic, physiological, and preliminary biochemical studies. Appl Environ Microbiol 66 (2000) 92-97
38. Santini J.M., Sly L.I., Wen A., Comrie D., De Wulf Durand P., and Macy J.M. New arsenite-oxidizing bacteria isolated from Australian gold mining environments-phylogenetic relationships. GeomicrobiolJ 19 (2002) 67-76
39. Silver S., and Keach D. Energy-dependent arsenate efflux: the mechanism of plasmid-mediated resistance. Proc Natl Acad Sci USA 79 (1982) 6114-6118
40. Silver S., and Phung L.T. Genes and enzyme involved in bacterial oxidation and reduction of inorganic arsenic. Appl Environ Microbiol 71 (2005) 599-608
41. Stanier R.Y., Palleroni N.J., and Doudoroff M. The aerobi Pseudomonas: a taxonomic study. J Gen Microbiol 43 (1966) 159-271
42. Suzuki K.N., Wakao T., Kimura K., Saka K., and Ohmiya K. Expression and regulation of the arsenic resistance operon of acidiphilium multivorum AIU301 plasmid pKW3O1 in Escherichia coli. Appl Environ Microbiol 64 (1998) 411-418
43. Tisa L.S., and Rosen B.P. Molecular characterizationof an anion pump: the arsB protein is the membrane anchor for the ArsA protein. J Biol Chem 265 (1990) 190-194
44. Ure A.M. Methods of analysis for heavy metals in soils. In: Alloway B.J. (Ed). Heavy Metals in Soils. 2nd ed. (1995), Chapman & Glasgow, London 58-102
45. Wang H.W., Lu Y.J., Li L.J., Liu S., Wang D.N., and Sui S.F. Trimeric ring-like structure of ArsA ATPase. FEES Lett 469 (2000) 105-110
46. Wu J., Tisa L.S., and Rosen B.P. Membrane topology of the ArsB protein, the membrane subunit of an anion-translocating ATPase. J Bio Chem 267 (1992) 12570-12576
47. Zhou T., Radaev S., Rosen B.P., and Gatti D.L. Structure of the ArsA ATPase: the catalytic subunit of a heavy metal resistance pump. EMBO J 19 (2000) 4838-4845