Building a topological and geometrical model of poplar tree using portable on-ground scanning LIDAR

Functional Plant Biology

Volumn 35, Issue 10, 2008, Pages 1080-1090

  Teobaldelli, Maurizio ^a   Puig, Alcoriza David ^a   Zenone, Terenzio ^a   Matteucci, Marco ^a   Seufert, Günther ^a   Sequeira, Vitor ^a  

^a JOINT RESEARCH CENTRE   (Italy)

Author keywords

AMAPmod; IMAGER 5003; JRC Reconstructor; Multiscale tree graph; Populus spp.

Indexed keywords

FORESTRY; IMAGE SENSORS; OPTICAL RADAR; SCANNING; THREE DIMENSIONAL; TOPOLOGY;

AMAPMOD; IMAGER 5003; JRC-RECONSTRUCTOR; MULTISCALE TREE GRAPH; POPULUS SPP.;

TREES (MATHEMATICS);

DECIDUOUS TREE; ECOLOGICAL MODELING; GEOMETRY; LIDAR; PLANT ARCHITECTURE; PLANTATION; TOPOLOGY;

FORESTRY; RADAR; SCANNING; SENSORS;

POPULUS;

EID: 55949124496     PISSN: 14454408     EISSN: None     Source Type: Journal    
DOI: 10.1071/FP08053     Document Type: Article

References (36)

1. Aschoff T, Thies M, Spiecker H (2004) 'Describing forest stands using terrestrial laser-scanning.' Available at http://cartesia.es/geodoc/isprs2004/ comm5/papers/556.pdf [Verified 3 March 2008].
2. Barthélémy D, Caraglio Y (2007) Plant architecture: a dynamic, multilevel and domprehensive approach to plant form, structure and ontogeny. Annals of Botany 99, 375-407. doi: 10.1093/aob/mcl260
3. Besl PJ, McKay ND (1992) A method for registration of 3-D shapes. IEEE Transactions on Pattern Analysis and Machine Intelligence 14, 239-256. doi: 10.1109/34.121791
4. Boehler W, Bordas Vicent M, Marbs A (2003) Investigating laser scanner accuracy. Paper presented at the 19th CIPA symposium, Antalya, Turkey, 30 September-4 October 2003. Available at http://www-group.slac.stanford.edu/met/ Align/Laser_Scanner/laserscanner_accuracy.pdf [Verfied 10 August 2008].
5. Bucksch A, Appel van Wageningen H (2006) Skeletonization and segmentation of point clouds using octrees and graph theory. In 'ISPRS Symposium: Image Engineering and Vision Metrology Vol. XXXVI. ISPRS Commission V Symposium.' (Eds H-G Maas, D Schneider) pp. 1-6. (Dresden: Dresden University of Technology). Available at http://www.isprs.org/commission5/proceedings06/paper/ 1252_Dresden06.pdf [Verfied 10 August 2008].
6. Caraglio Y, Dabadie P (1988) 'Le Peuplier quelques aspects de son architecture.' Available at http://amap.cirad.fr/architecture/feuillus/peuplier. html [Verified 3 March 2008].
7. Castel T, Beaudoin A, Floury N, Le Toan T, Caraglio Y, Barczi JF (2001) Deriving forest parameters for backscatter models using the AMAP architectural plant model. IEEE Transactions on Geoscience and Remote Sensing 39, 571-583. doi: 10.1109/36.911115
8. Chiarabaglio PM, CoaloaD(2002) Stima del Pioppeto. Criteri oggettivi per la valutazione del pioppeto maturo. In 'Supplemento ai Quaderni di ricerca della Regione Piemonte - Agricoltura.' (Ed. T Trevisan), pp. 1-47. (Torino, Italia). [In Italian]
9. de Reffye Ph, Elguero E, Costes E (1991) Growth units construction in trees: a stochastic approach. Acta Biotheoretica 39, 325-342. doi: 10.1007/BF00114185
10. El khrachy IAEhM (2008) Towards an automatic registration for terrestrial laser scanner data. PhD Thesis; Fakult€at Architektur, Bauingenieurwesen und Umweltwissenschaften der Technischen Universitäat Carolo-Wilhelmina zu Braunschweig. Germany. Available at http://www.digibib.tu-bs.de/?docid=00022231 [Verified 3 July 2008].
11. Fröhlich C, Mettenleiter M (2004) Terrestrial laser-scanning - new perspectives in 3-D-surveying. Paper presented at the ISPRS Workshop 'Laser-Scanners for Forest and Landscape Assessment', Freiburg, Germany, 3-6 October 2004; Available at http://www.isprs.org/commission8/ workshop_laser_forest/FROEHLICH.pdf [Verfied 10 August 2008].
12. Fröhlich C, MettenleiterM, Härtl F, Dalton G, Hines D (2000) Imaging laser radar for 3-D modelling of real world environments. Sensor Review 20, 273-282. doi: 10.1108/02602280010351019
13. Fuss B,LeCocqC, Ruland R, StaigerR(2004) Investigation onlaser scanners. Paper presented at the 8th International Workshop on Accelerator Alignment (IWAA 2004), Geneva, Switzerland, 4-7 October 2004. Available at http://www.slac. stanford.edu/econf/C04100411/papers/026.PDF [Verified 4 July 2008].
14. Gärtner H, Denier C (2006) Application of 3-D laser scanning device to acquire the structure of whole root systems. A pilot study. TRACE - Tree Rings in Archaeology, Climatology and Ecology 4, 288-294.
15. Godin C (2000) Representing and encoding plant architecture: a review. Annals of Forest Science 57, 413-438. doi: 10.1051/forest:2000132
16. Godin C, Caraglio Y (1998) A multiscale model of plant topological structures. Journal of Theoretical Biology 191, 1-46. doi: 10.1006/jtbi.1997.0561
17. Godin C, Guédon Y (2001) 'AMAPmod, Introduction and reference manual version 1.8. CIRAD/INRA - UMR Modélisation des Plantes.' Available at http://amap.cirad.fr/amapmod/refermanual15/accueil.html [Verified 3 March 2008].
18. Godin C, Costes E, Caraglio Y (1997) Exploring plant topological structure with the AMAPmod software: an outline. Silva Fennica 31, 357-368.
19. Godin C, Costes E, Sinoquet H (1999a) A method for describing plant architecture which integrates topology and geometry. Annals of Botany 84, 343-357. doi: 10.1006/anbo.1999.0923
20. Godin C, Guedon Y, Costes E (1999b) Exploration of a plant architecture database with the AMAPmod software illustrated on an apple tree hybrid family. Agronomie 19, 163-184. doi: 10.1051/agro:19990301
21. Gorte B, Winterhalder D (2004) Reconstruction of laser-scanned trees using filter operations in the 3D raster domain. International Archives of Photogrammetry, Remote Sensing and Spatial Information Sciences XXXVI, 39-44. part 8/W2
22. Hallé F, Oldeman RAA, Tomlinson PB (1978) 'Tropical trees and forests.' (Springer-Verlag: Berlin)
23. Henning JG (2005) Modeling forest canopy distribution from ground-based laser scanner data. PhD Thesis, Faculty of Virginia Polytechnic Institute and State University. Available at http://scholar.lib.vt.edu/theses/available/etd- 07282005-170817/unrestricted/JHenning_Dissertation.pdf [Verified 3 March 2008].
24. Henning JG, Radtke PJ (2006) Detailed stem measurements of standing trees from ground-based scanning lidar. Forest Science 52, 67-80.
25. Hosoi F, Omasa K (2006) Voxel-based 3-D modeling of individual trees for estimating leaf area density using high-resolution portable scanning lidar. IEEE Transactions on GeoScience and Remote Sensing 44, 3610-3618.
26. Hosoi F, Omasa K (2007) Factors contributing to accuracy in the estimation of the woody canopy leaf area density profile using 3-D portable lidar imaging. Journal of Experimental Botany 58, 3463-3473. doi: 10.1093/jxb/erm203
27. Omasa K, Hosoi F, Konishi A (2007a) 3D lidar imaging for detecting and understanding plant responses and canopy structure. Journal of Experimental Botany 58, 881-898. doi: 10.1093/jxb/erl142
28. Omasa K, Hosoi F, Uenishi TM, Shimizu Y, Akyyama Y (2007b) Three-dimensional modeling of an urban park and trees by combined airborne and portable on-ground scanning LIDAR remote sensing. In 'Environmental Modeling and Assessment'. Available at http://www.springerlink.com/content/ 5536u8j63r84505t/fulltext.pdf [Verified 10 August 2008]
29. Pradal C, Boudon F, Nouguier C, Chopard J, Godin C (2007a) PlantGL: a Python-based geometric library for 3-D plant modelling at different scales. Research report, 6367. Available at http://hal.inria.fr/inria-00191126/ [Verified 2 July 2008].
30. Pradal C, Dufour-Kowalski S, Boudon F, Dones N (2007b) The architecture of OpenAlea: a visual programming and component based software for plant modelling. Paper presented at the 5th international workshop on functional structural plant models, Napier, New Zealand, 4-9 November 207. Available at http://algorithmicbotany.org/FSPM07/Individual/25.pdf [Verified 10 August 2008]
31. Sequeira V (1996) Active range sensing for three-dimensional environment reconstruction. PhD Thesis. Department of Electrical and Computer Engineering, IST-Technical University of Lisbon, Portugal.
32. Simonse M, Aschoff T, Spiecker H, ThiesM(2003) Automatic determination of forest inventory parameters using terrestrial laser scanning. In 'Proceedings of the ScandLaser Scientific Workshop on Airborne Laser Scanning of Forests, Umeå, Sweden'. pp. 251-257. Available at http://www.natscan.uni-freiburg. de/suite/pdf/030916_1643_1.pdf [Verified 3 March 2008].
33. Teobaldelli M, Zenone , Puig D, Matteucci M, Seufert G, Sequeira V (2007) Structural tree modelling of above and belowground poplar tree using direct and indirect measurements: terrestrial laser scanning, WGROGRA, AMAPmod and JRC-Reconstructor. Paper presented at the 5th international workshop on functional structural plant models, Napier, NewZealand, 4-9November2007. Available at http://algorithmicbotany.org/FSPM07/Individual/20.pdf [Verified 10 August 2008]
34. Teobaldelli M, Puig D (2006) Terrestrial laser scanner for monitoring land use and land use change and forestry under the Kyoto Protocol. Oral presentation. Technical meeting on specific forestry issues related to reporting and accounting under the Kyoto Protocol. Ispra (Va), Italy. Available at http://afoludata.jrc.it/events/Kyoto_technical_workshop/presentations/ Teobaldelli_Puig.pdf [Verified 3 March 2008].
35. Thies M, Pfeifer N, Winterhalder D, Gorte BGH (2004) Three-dimensional reconstruction of stems for assessment of taper, sweep and lean based on laser scanning of standing trees. Scandinavian Journal of Forest Research 19, 571-581. doi: 10.1080/02827580410019562
36. Vosselman G, Gorte BGH, Sithole G, Rabbani T (2004) Recognising structure in laser-scanner point clouds. Paper presented at the ISPRS Workshop 'Laser-Scanners for Forest and Landscape Assessment', Freiburg, Germany, 3-6 October 2004. Available at http://www.isprs.org/commission8/ workshop_laser_forest/VOSSELMAN.pdf [Verified 10 August 2008]