QTL mapping designs for aquaculture

Aquaculture

Volumn 285, Issue 1-4, 2008, Pages 23-29

  Massault, Cécile ^a,b   Bovenhuis, Henk ^b   Haley, Chris ^a   de Koning, Dirk Jan ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

Experimental design; Fish; QTL mapping; Shellfish; Statistical power

Indexed keywords

BREEDING; EXPERIMENTAL DESIGN; GENOTYPE; MAPPING METHOD; SHELLFISH CULTURE; STATISTICAL ANALYSIS;

EID: 55949123587     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2008.06.040     Document Type: Article

References (31)

1. Andersson L., and Georges M. Domestic-animal genomics: deciphering the genetics of complex traits. Nat. Rev. Genet. 5 (2004) 202-212
2. Bekkevold D., Hansen M.M., and Loeschcke V. Male reproductive competition in spawning aggregations of cod (Gadus morhua, L.). Mol. Ecol. 11 (2002) 91-102
3. Bovenhuis H., and Spelman R.J. Selective genotyping to detect quantitative trait loci for multiple traits in outbred populations. J. Dairy Sci. 83 (2000) 173-180
4. Brown R.C., Woolliams J.A., and McAndrew B.J. Factors influencing effective population size in commercial populations of gilthead sea bream, Sparus aurata. Aquaculture 247 (2006) 219-225
5. Chatziplis D.G., and Haley C.S. Selective genotyping for QTL detection using sib pair analysis in outbred populations with hierarchical structures. Genet. Sel. Evol. 32 (2000) 547-560
6. Chistiakov D.A., Hellemans B., Haley C.S., Law A.S., Tsigenopoulos C.S., Kotoulas G., Bertotto D., Libertini A., and Volckaert F.A. A microsatellite linkage map of the European sea bass Dicentrarchus labrax L. Genetics 170 (2005) 1821-1826
7. Darvasi A., Weinreb A., Minke V., Weller J.I., and Soller M. Detecting marker-QTL linkage and estimating QTL gene effect and map location using a saturated genetic map. Genetics 134 (1993) 943-951
8. Fessehaye J., El-Bialy Z., Resk M., Crooijmans R., Bovenhuis H., and Komen H. Mating systems and male reproductive success in Nile tilapia (Oreochromis niloticus) in breeding hapas: a microsatellite analysis. Aquaculture 256 (2006) 148-158
9. Gjedrem T., Andersen O., Bentsen K.B., Fjalestad K.T., Gjerde B., Hayes B.J., Kolstad K., Meuwissen T.H.E., Olesen I., Refstie T., Rye M., Sonesson A., Thodesen J., and Woolliams J.A. Selection and Breeding Programs in Aquaculture (2005), Springer, Dordrescht, The Netherlands -364
10. Hayes B.J., Gjuvsland A., and Omholt S. Power of QTL mapping experiments in commercial Atlantic salmon populations, exploiting linkage and linkage disequilibrium and effect of limited recombination in males. Heredity 97 (2006) 4-18
11. Hubert S., and Hedgecock D. Linkage maps of microsatellite DNA markers for the Pacific oyster Crassostrea gigas. Genetics 168 (2004) 351-362
12. Kolbehdari D., Jansen G.B., Schaeffer L.R., and Allen B.O. Power of QTL detection by either fixed or random models in half-sib designs. Genet. Sel. Evol. 37 (2005) 601-614
13. Korol A., Shirak A., Cnaani A., and Hallerman E.M. Detection and analysis of quantitative trait loci (QTL) for economic traits in aquatic species. In: Liu Z. (Ed). Aquaculture Genome Technologies (2007), Blackwell Publishing, Oxford 169-197
14. Lander E.S., and Botstein D. Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121 (1989) 185-199
15. Lebowitz R.J., Soller M., and Beckmann J.S. Trait-based analysis for the detection of linkage between marker loci and quantitative trait loci in crosses between inbred lines. Theor. Appl. Genet. 73 (1987) 556-562
16. Martinez V. Marker-assisted selection in fish and shellfish breeding schemes. In: Guimarães E., Ruane J., Scherf B., Sonnino A., and Dargie J. (Eds). Marker-assisted Selection, Current Status and Future Perspectives in Crops, Livestock, Forestry and Fish (2007), FAO, Rome 309-328
17. Martinez V.A., Hill W.G., and Knott S.A. On the use of double haploids for detecting QTL in outbred populations. Heredity 88 (2002) 423-431
18. Perry G.M.L., Danzmann R.G., Fergusson M.M., and Gibson J.P. Quantitative trait loci for upper thermal tolerance in outbred strains of rainbow trout (Oncorhynchus mykiss). Heredity 86 (2001) 333-341
19. Porta J., Porta M., Martinez-Rodriguez G., and Alvarez M.C. Genetic structure and genetic relatedness of a hatchery stock of Senegal sole (Solea senegalensis) inferred by microsatellites. Aquaculture 251 (2006) 46-55
20. Rabbee N., Speca D., Armstrong N.J., and Speed T.P. Power calculations for selective genotyping in QTL mapping in backcross mice. Genet. Res. Camb. 84 (2004) 103-108
21. Sen S., Satagopan J.M., and Churchill G.A. Quantitative trait locus study design from an information perspective. Genetics 170 (2005) 447-464
22. Sonesson A.K. Possibilities for marker-assisted selection in aquaculture breeding schemes. In: Guimarães E., Ruane J., Scherf B., Sonnino A., and Dargie J. (Eds). Marker-assisted Selection, Current Status and Future Perspectives in Crops, Livestock, Forestry and Fish (2007), FAO, Rome 309-328
23. Sonesson A.K. Within-family marker-assisted selection for aquaculture species. Genet. Sel. Evol. 39 (2007) 301-317
24. van der Beek S., van Arendonk J.A.M., and Groen A.F. Power of two- and three-generation QTL mapping experiments in an outbred population containing full-sib or half-sib families. Theor. Appl. Genet. 91 (1995) 1115-1124
25. Vandeputte M., Kocour M., Mauger S., Dupont-Nivet M., De Guerry D., Gela D., Vallod D., Linhart O., and Chevassus B. Heritability estimates for growth-related traits using microsatellite parentage assignment in juvenile common carp (Cyprinus carpio L.). Aquaculture 247 (2005) 31-32
26. Verhoeven K.J., Jannink J.L., and McIntyre L.M. Using mating designs to uncover QTL and the genetic architecture of complex traits. Heredity 96 (2006) 139-149
27. Weller J.I., Kashi Y., and Soller M. Power of daughter and granddaughter designs for determining linkage between marker loci and quantitative trait loci in dairy cattle. J. Dairy Sci. 73 (1990) 2525-2537
28. Williams J.T., and Blangero J. Power of variance component linkage analysis to detect quantitative trait loci. Ann. Hum. Genet. 63 (1999) 545-563
29. Xu Z.L., Zou F., and Vision T.J. Improving quantitative trait loci mapping resolution in experimental crosses by the use of genotypically selected samples. Genetics 170 (2005) 401-408
30. Yu X.J., Knott S.A., and Visscher P. Theoretical and empirical power of regression and maximum-likelihood methods to map quantitative trait loci in general pedigree. Am. J. Hum. Genet. 75 (2004) 17-26
31. Zhao H., Zhang H., and Rotter J.I. Cost-effective sib pair designs in the mapping of quantitative trait loci. Am. J. Hum. Genet. 60 (1997) 1211-1221