Clustering hybrid regression: A novel computational approach to study and model biohydrogen production through dark fermentation

Bioprocess and Biosystems Engineering

Volumn 31, Issue 6, 2008, Pages 631-640

  Nikhil, ^a   Koskinen, Perttu E P ^a   Visa, Ari ^a   Kaksonen, Anna H ^a   Puhakka, Jaakko A ^a   Yli Harja, Olli ^a  

^a TAMPERE UNIVERSITY OF TECHNOLOGY   (Finland)

Author keywords

Biohydrogen; Bioprocess modeling; Clustering hybrid regression (CHR); K means; Self organizing maps (SOM)

Indexed keywords

BIOHYDROGEN; BIOPROCESS MODELING; CLUSTERING HYBRID REGRESSION (CHR); K-MEANS; SELF-ORGANIZING MAPS (SOM);

BIOCHEMICAL ENGINEERING; BIOCHEMISTRY; CONFORMAL MAPPING; ETHANOL; GLUCOSE; MEAN SQUARE ERROR; METABOLISM; OPTICAL PROJECTORS; REGRESSION ANALYSIS; STRENGTH OF MATERIALS;

SELF ORGANIZING MAPS;

ACETIC ACID; ALCOHOL; BUTYRIC ACID; GLUCOSE; HYDROGEN; PROPIONIC ACID; ACETIC ACID DERIVATIVE; BUTYRIC ACID DERIVATIVE; PROPIONIC ACID DERIVATIVE;

ALCOHOL PRODUCTION; ARTICLE; BIOPROCESS; CELL SUSPENSION; CONTROLLED STUDY; EXPERIMENTAL MODEL; FERMENTATION TECHNIQUE; NONHUMAN; PRIORITY JOURNAL; REACTOR OPERATION; ALGORITHM; BIOLOGY; BIOMASS; BIOREACTOR; CHEMISTRY; CLUSTER ANALYSIS; FERMENTATION; METHODOLOGY; REGRESSION ANALYSIS; STATISTICAL MODEL;

ACETATES; ALGORITHMS; BIOMASS; BIOREACTORS; BUTYRATES; CLUSTER ANALYSIS; COMPUTATIONAL BIOLOGY; ETHANOL; FERMENTATION; GLUCOSE; HYDROGEN; MODELS, STATISTICAL; PROPIONATES; REGRESSION ANALYSIS;

EID: 55949108494     PISSN: 16157591     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00449-008-0213-9     Document Type: Article

References (57)

1. JOM Bockris 2002 The origin of ideas on a hydrogen economy and its solution to the decay of the environment. Int J Hydrogen Energy 27 731 740
2. D Das TN Veziroǧlu 2001 Hydrogen production by biological processes: a survey of literature Int J Hydrogen Energy 26 13 28
3. J Benemann 1996 Hydrogen biotechnology: progress and prospects Nat Biotechnol 14 1101 1103
4. IK Kapdan F Kargi 2006 Bio-hydrogen production from waste materials Enzyme Microb Tech 38 569 582
5. C Li HHP Fang 2007 Fermentative hydrogen production and wastewater and solid wastes by mixed cultures Crit Rev Env Sci Technol 37 1 39
6. CY Lin RC Chang 2004 Fermentative hydrogen production at ambient temperature Int J Hydrogen Energy 29 715 720
7. J Rodriguez R Kleerebezem JM Lema MC van Loosdrecht 2006 Modeling product formation in anaerobic mixed culture fermentations Biotechnol Bioeng 93 592 606
8. EJ Bailey 1998 Mathematical modeling and analysis in biochemical engineering: past accomplishments and future opportunities Biotechnol Prog 14 8 20
9. O Bernard G Bastin 2005 On the estimation of the pseudo-stoichiometric matrix for macroscopic mass balance modelling of biotechnological processes Math Biosci 193 51 77
10. A Husain 1998 Mathematical models of the kinetics of anaerobic digestion-a selected review Biomass Bioenerg 14 561 571
11. PL [tmp] McCarty FE Mosey 1991 Modelling of anaerobic digestion processes (a discussion of concepts) Wat Sci Technol 24 8 123 129
12. D Ramkrishna NR Amundson 2004 Mathematics in chemical engineering: a 50 year introspection AIChE J 50 7 23
13. KY Rani VSR Rao 1999 Control of fermenters-a review Bioprocess Eng 21 77 78
14. A Rapaport D Dochain 2005 Interval observers for biochemical processes with uncertain kinetics and inputs Math Biosci 193 235 253
15. Batstone DJ, Keller J, Angelidaki I, Kalyuzhnyi SV, Pavlostathis SG, Rozzi A, Sanders WTM, Siegrist H, Vavilin VA (2002) Anaerobic digestion model no. 1 (ADM1), IWA Task Group for mathematical modelling of anaerobic digestion processes. IWA Publishing, London
16. F Blumensaat J Keller 2005 Modelling of two-stage anaerobic digestion using the IWA Anaerobic digestion model no. 1 (ADM1) Water Res 39 171 183
17. SV Kalyuzhnyi 1997 Batch anaerobic digestion of glucose and its mathematical modeling. II. Description, verification and application of model Bioresour Technol 59 249 258
18. WJ Parker 2005 Application of the ADM1 model to advanced anaerobic digestion Bioresour Technol 96 832 1842
19. Nikhil A Visa O Yli-Harja CY Lin JA Puhakka 2008 Application of CHR approach to model xylose-based fermentative hydrogen production Energ Fuel 22 1 128 133
20. 2 production and compositions of bacterial communities within a dark fermentation fluidized-bed bioreactor Biotechnol Bioeng 97 4 742 758
21. Kohonen T (1995) Self-organizing maps. Springer series in information sciences, vol 30. Springer, Berlin
22. Simula O, Kangas J (1995) Process monitoring and visualization using self-organizing maps. Neural networks for chemical engineers. Computer-aided chemical engineering. Elsevier, Amsterdam, pp 377-390
23. Kaski S (1997) Data exploration using self-organizing maps. DTech Thesis. Helsinki University of Technology, Finland
24. Kasslin M, Kangas J, Simula O (1992) Process state monitoring using self organizing maps. In: Aleksander I, Taylor J (eds) Artificial neural networks, vol 2. North Holland, Amsterdam, pp 1531-1534
25. Kohonen T, Hynninen J, Kangas J, Laaksonen J (1996) SOM-PAK: the self-organizing map program package. Helsinki University of Technology, Laboratory of Computer and Information Science, Espoo, Finland: Technical Report A31
26. Vesanto J, Himberg J, Alhoniemi E, Parhankangas J (2000) SOM Toolbox for Matlab 5. Som Toolbox Team. Helsinki University of Technology, Finland. http://www.cis.hut.fi/projects/somtoolbox/
27. MacQueen JB (1967) Some Methods for classification and Analysis of Multivariate Observations. Proc 5th Berkeley Symposium on Mathematical Statistics and Probability, Berkeley, University of California Press 1:281-297
28. Jain AK, Dubes RC (1988) Algorithms for clustering data. Prentice Hall, Englewood Cliffs
29. AK Jain MN Murty PJ Flynn 1999 Data clustering: a review ACM Comput Surv 31 264 323
30. Kaufman L, Rousseeuw PJ (1990) Finding groups in data: an introduction to cluster analysis. Wiley-Interscience, New York
31. PJ Rousseeuw 1987 Silhouettes: a graphical aid to the interpretation and validation of cluster analysis J Comput Appl Math 20 53 65
32. VE [tmp] McGee WT Carleton 1970 Piecewise Regression J Am Stat Assoc 65 1109 1124
33. Cleveland WS, Grosse EH, Shyu WM (1992) Local regression models. In: Chambers JM, Hastie TJ (eds) Chapman and Hall, London, pp 309-376
34. Chen Y, Dong G, Han J, Wah BW, Wang J (2002) Multi-dimensional regression analysis of time-series data streams. In: Proceedings of 28th international conference very large data bases, Hongkong, China, pp 323-334
35. MN Karim D Hodge L Simon 2003 Data-based modeling and analysis of bioprocesses, Some real experiences Biotechnol Prog 19 1591 1605
36. FJ Massey Jr 1951 The Kolmogorov-Smirnov test for goodness of fit J Am Stat Assoc 46 68 78
37. DA Darling 1957 The Kolmogorov-Smirnov, Cramer-von Mises Tests Ann Math Stat 28 823 838
38. HW Lilliefors 1967 On the Kolmogorov-Smirnov test for normality with mean and variance unknown J Am Stat Assoc 62 399 402
39. PC Hallenbeck 2005 Fundamentals of fermentative production of hydrogen Wat Sci Technol 52 1-2 21 29
40. R Nandi S Sengupta 1998 Microbial production of hydrogen: an overview Crit Rev Microbiol 24 61 84
41. FY Chang CY Lin 2006 Calcium effect on fermentative hydrogen production in an anaerobic up-flow sludge blanket system Wat Sci Technol 54 9 105 112
42. DH Kim SK Han SH Kim HS Shin 2006 Effect of gas sparging on continuous hydrogen production Int J Hydrogen Energy 31 2158 2169
43. SH Kim SK Han HS Shin 2006 Effect of substrate concentration on hydrogen production and 16S rDNA-based analysis of the microbial community in a continuous fermenter Process Biochem 41 199 207
44. CN Lin SY Wu JS Chang 2006 Fermentative hydrogen production with a draft tube fluidized bed reactor containing silicone-gel-immobilized anaerobic sludge Int J Hydrogen Energy 31 2200 2210
45. CY Lin CH Hung CH Chen WT Chung LH Cheng 2006 Effects of initial cultivation pH on fermentative hydrogen production from xylose using natural mixed cultures Process Biochem 41 1383 1390
46. SY Wu CH Hung CN Lin HW Chen AS Lee JS Chang 2006 Fermentative hydrogen production and bacterial community structure in high-rate anaerobic bioreactors containing silicone-immobilized and self-flocculated sludge Biotechnol Bioeng 93 934 946
47. NQ Ren ML Gong 2006 Acclimation strategy of a biohydrogen producing population in a continuous-flow reactor with carbohydrate fermentation Eng Life Sci 6 403 409
48. AC Blackwood AC Neish GA Ledingham 1956 Dissimilation of glucose at controlled pH values by pigmented and non-pigmented strains of Escherichia coli J Bacteriol 72 497 499
49. DY Cheong CL Hansen 2006 Acidogenesis characteristics of natural, mixed anaerobes converting carbohydrate-rich synthetic waste water to hydrogen Process Biochem 41 1736 1745
50. I Hussy FR Hawkes R Dinsdale DL Hawkes 2003 Continuous fermentative hydrogen production from a wheat starch co-product by mixed microflora Biotechnol Bioeng 84 619 626
51. FR Hawkes R Dinsdale DL Hawkes I Hussy 2002 Sustainable fermentative hydrogen production: challenges for process optimisation Int J Hydrogen Energy 27 1339 1347
52. O Mizuno R Dinsdale FR Hawkes DL Hawkes T Noike 2000 Enhancement of hydrogen production from glucose by nitrogen gas sparging Bioresour Technol 73 59 65
53. TM Liang SS Cheng KL Wu 2002 Behavioral study on hydrogen fermentation reactor installed with silicone rubber membrane Int J Hydrogen Energy 27 1157 1165
54. VV Teplyakov LG Gassanova EG Sostina EV Slepova M Modigell AI Netrusov 2002 Lab-scale bioreactor integrated with active membrane system for hydrogen production: experience and prospects Int J Hydrogen Energy 27 1149 1155
55. N Kataoka A Miya K Kiriyama 1997 Studies on hydrogen production by continuous culture system of hydrogen-producing anaerobic bacteria Water Sci Technol 36 6-7 41 47
56. CC Chen CY Lin 2003 Using sucrose as a substrate in an anaerobic hydrogen producing reactor Adv Environ Res 7 695 699
57. CY Lin CY Lee IC Tseng IZ Shiao 2006 Biohydrogen production from sucrose using base-enriched anaerobic mixed microflora Process Biochem 41 915 919