Gene expression profiling of Listeria monocytogenes strain F2365 during growth in ultrahigh-temperature-processed skim milk

Applied and Environmental Microbiology

Volumn 74, Issue 22, 2008, Pages 6859-6866

  Liu, Yanhong ^a   Ream, Amy ^a  

^a EASTERN REGIONAL RESEARCH CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINES; AMINO ACIDS; BINDING ENERGY; BIOACTIVITY; BIOCHEMICAL ENGINEERING; BIOCHEMISTRY; CELL PROLIFERATION; CELLS; CYTOLOGY; ENCODING (SYMBOLS); GENE EXPRESSION; HYDROGEN; HYDROGEN PEROXIDE; MANGANESE; METABOLISM; NUCLEIC ACIDS; OLIGONUCLEOTIDES; ORGANIC ACIDS; PROTEINS; RNA; SYNTHESIS (CHEMICAL);

BINDING PROTEINS; BRAIN HEART INFUSIONS; CELL DIVISIONS; CELL ENVELOPES; CELLULAR PROCESSES; ELEVATED LEVELS; ENERGY METABOLISMS; FLUORESCENT DYES; GENE EXPRESSION PROFILES; GENE EXPRESSION PROFILING; GENES ENCODING; HYPOTHETICAL PROTEINS; LIQUID FOODS; LISTERIA MONOCYTOGENES; MICROARRAY CHIPS; MICROARRAY TECHNOLOGIES; MONOCYTOGENES; PROTEIN SYNTHESES; SKIM MILKS; STRESS SENSITIVITIES; TIME REVERSES; TRANSCRIPTIONAL REGULATORS; ULTRAHIGH TEMPERATURES;

GENES;

COMPLEMENTARY DNA; HYDROGEN PEROXIDE; RNA 16S;

BACTERIUM; GENE EXPRESSION; GROWTH RESPONSE; HIGH TEMPERATURE; METABOLISM; MILK; SURVIVAL; TEMPERATURE EFFECT;

ARTICLE; BACTERIAL GROWTH; BACTERIUM CONTAMINATION; BACTERIUM CULTURE; CULTURE MEDIUM; DAIRY INDUSTRY; FOOD INDUSTRY; GENE EXPRESSION; HIGH TEMPERATURE PROCEDURES; LIQUID; LISTERIA MONOCYTOGENES; MILK; NONHUMAN; NUCLEOTIDE SEQUENCE; REAL TIME POLYMERASE CHAIN REACTION; TRANSCRIPTION REGULATION;

ADAPTATION, PHYSIOLOGICAL; ANIMALS; BACTERIAL PROTEINS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; HOT TEMPERATURE; LISTERIA MONOCYTOGENES; MILK; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION;

LISTERIA MONOCYTOGENES;

EID: 55949089775     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00356-08     Document Type: Article

References (44)

1. Abee, T., W. van Schaik, and R. J. Siezen. 2004. Impact of genomics on microbial food safety. Trends Biotechnol. 22:653-660.
2. Allawi, H. T., and J. SantaLucia, Jr. 1999. Nearest-neighbor thermodynamics and NMR of DNA sequences with internal AA, CC, GG, and TT mismatches. Biochemistry 38:3468-3477.
3. Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
4. Borezee, E., E. Pellegrini, and P. Berche. 2000. OppA of Listeria monocytogenes, an oligopeptide-binding protein required for bacterial growth at low temperature and involved in intracellular survival. Infect. Immun. 68:7069-7077.
5. Budde, I., L. Steil, C. Scharf, U. Völker, and E. Bremer. 2006. Adaptation of Bacillus subtilis to growth at low temperature: a combined transcriptomic and proteomic appraisal. Microbiology 152:831-853.
6. Carrique-Mas, J. J., I. Hökeberg, Y. Andersson, M. Arneborn, W. Tham, M. L. Danielsson-Tham, B. Osterman, M. Leffler, M. Steen, E. Eriksson, G. Hedin, and J. Giesecke. 2003. Febrile gastroenteritis after eating on-farm manufactured fresh cheese - an outbreak of listeriosis? Epidemiol. Infect. 130:79-86.
7. Chan, Y. C., S. Raengpradub, K. J. Boor, and M. Wiedmann. 2007. Microarray-based characterization of the Listeria monocytogenes cold regulon in logand stationary-phase cells. Appl. Environ. Microbiol. 73:6484-6498.
8. Dobbin, K., J. H. Shih, and R. Simon. 2003. Questions and answers on design of dual-label microarrays for identifying differentially expressed genes. J. Natl. Cancer Inst. 95:1362-1369.
9. Donnelly, C. W., and E. H. Briggs. 1986. Psychrotrophic growth and thermal inactivation of Listeria monocytogenes as a function of milk composition. J. Food Prot. 49:994-998.
10. Farber, J. M., and P. I. Peterkin. 1991. Listeria monocytogenes, a food-borne pathogen. Microbiol. Rev. 55:476-511.
11. Gat, O., I. Mendelson, T. Chitlaru, N. Ariel, Z. Altboum, H. Levy, S. Weiss, H. Grosfeld, S. Cohen, and A. Shafferman. 2005. The solute-binding component of a putative Mn(II) ABC transporter (MntA) is a novel Bacillus anthracis virulence determinant. Mol. Microbiol. 58:533-551.
12. Gitton, C., M. Meyrand, J. Wang, C. Caron, A. Trubuil, A. Guillot, and M. Y. Mistou. 2005. Proteomic signature of Lactococcus lactis NCDO763 cultivated in milk. Appl. Environ. Microbiol. 71:7152-7163.
13. Higuchi, M., Y. Yamamoto, and Y. Kamio. 2000. Molecular biology of oxygen tolerance in lactic acid bacteria: functions of NADH oxidases and Dpr in oxidative stress. J. Biosci. Bioeng. 90:484-493.
14. Hufner, E., T. Markieton, S. Chaillou, A. M. Crutz-Le Coq, M. Zagorec, and C. Hertel. 2007. Identification of Lactobacillus sakei genes induced during meat fermentation and their role in survival and growth. Appl. Environ. Microbiol. 73:2522-2531.
15. Jiang, L. L., J. J. Xu, N. Chen, J. B. Shuai, and W. H. Fang. 2006. Virulence phenotyping and molecular characterization of a low-pathogenicity isolate of Listeria monocytogenes from cow's milk. Acta Biochim. Biophys. Sin. (Shanghai) 38:262-270.
16. Juillard, V., D. Le Bars, E. R. Kunji, W. N. Konings, J. C. Gripon, and J. Richard. 1995. Oligopeptides are the main source of nitrogen for Lactococcus lactis during growth in milk. Appl. Environ. Microbiol. 61:3024-3030.
17. Kazmierczak, M. J., S. C. Mithoe, K. J. Boor, and M. Wiedmann. 2003. Listeria monocytogenes B regulates stress response and virulence functions. J. Bacteriol. 185:5722-5734.
18. Kiss, R., T. Tirczka, G. Szita, S. Bernáth, and G. Csikó. 2006. Listeria monocytogenes food monitoring data and incidence of human listeriosis in Hungary, 2004. Int. J. Food Microbiol. 112:71-74.
19. Komatsuzawa, H., T. Fujiwara, H. Nishi, S. Yamada, M. Ohara, N. McCallum, B. Berger-Bächi, and M. Sugai. 2004. The gate controlling cell wall synthesis in Staphylococcus aureus. Mol. Microbiol. 53:1221-1231.
20. Linnan, M. J., L. Mascola, X. D. Lou, V. Goulet, S. May, C. Salminen, D. W. Hird, M. L. Yonekura, P. Hayes, R. Weaver, et al. 1988. Epidemic listeriosis associated with Mexican-style cheese. N. Engl. J. Med. 319:823-828.
21. Lonnerdal, B., C. L. Keen, and L. S. Hurley. 1981. Iron, copper, zinc, and manganese in milk. Annu. Rev. Nutr. 1:149-174.
22. Lutkenhaus, J. 1993. FtsZ ring in bacterial cytokinesis. Mol. Microbiol. 9:403-409.
23. MacDonald, P. D., R. E. Whitwam, J. D. Boggs, J. N. MacCormack, K. L. Anderson, J. W. Reardon, J. R. Saah, L. M. Graves, S. B. Hunter, and J. Sobel. 2005. Outbreak of listeriosis among Mexican immigrants as a result of consumption of illicitly produced Mexican-style cheese. Clin. Infect. Dis. 40:677-682.
24. Malone, A. S., Y. K. Chung, and A. E. Yousef. 2006. Genes of Escherichia coli O157:H7 that are involved in high-pressure resistance. Appl. Environ. Microbiol. 72:2661-2671.
25. Marshall, D. L., and R. H. Schmidt. 1991. Physiological evaluation of stimulated growth of Listeria monocytogenes by Pseudomonas species in milk. Can. J. Microbiol. 37:594-599.
26. Morey, J. S., J. C. Ryan, and F. M. Van Dolah. 2006. Microarray validation: factors influencing correlation between oligonucleotide microarrays and real-time PCR. Biol. Proced. Online 8:175-193.
27. Nakaminami, K., D. T. Karlson, and R. Imai. 2006. Functional conservation of cold shock domains in bacteria and higher plants. Proc. Natl. Acad. Sci. USA 103:10122-10127.
28. Nelson, K. E., D. E. Fouts, E. F. Mongodin, J. Ravel, R. T. DeBoy, J. F. Kolonay, D. A. Rasko, S. V. Angiuoli, S. R. Gill, I. T. Paulsen, J. Peterson, O. White, W. C. Nelson, W. Nierman, M. J. Beanan, L. M. Brinkac, S. C. Daugherty, R. J. Dodson, A. S. Durkin, R. Madupu, D. H. Haft, J. Selengut, S. Van Aken, H. Khouri, N. Fedorova, H. Forberger, B. Tran, S. Kathariou, L. D. Wonderling, G. A. Uhlich, D. O. Bayles, J. B. Luchansky, and C. M. Fraser. 2004. Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species. Nucleic Acids Res. 32:2386-2395.
29. Nightingale, K. K., S. R. Milillo, R. A. Ivy, A. J. Ho, H. F. Oliver, and M. Wiedmann. 2007. Listeria monocytogenes F2365 carries several authentic mutations potentially leading to truncated gene products, including inlB, and demonstrates atypical phenotypic characteristics. J. Food Prot. 70:482-488.
30. Ogola, H., A. Shitandi, and J. Nanua. 2007. Effect of mastitis on raw milk compositional quality. J. Vet. Sci. 8:237-242.
31. Papp-Wallace, K. M., and M. E. Maguire. 2006. Manganese transport and the role of manganese in virulence. Annu. Rev. Microbiol. 60:187-209.
32. Pfaffl, M. W. 2001. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 29:e45.
33. Pine, L., G. B. Malcolm, J. B. Brooks, and M. I. Daneshvar. 1989. Physiological studies on the growth and utilization of sugars by Listeria species. Can. J. Microbiol. 35:245-254.
34. Polidoro, M., D. De Biase, B. Montagnini, L. Guarrera, S. Cavallo, P. Valenti, S. Stefanini, and E. Chiancone. 2002. The expression of the dodecameric ferritin in Listeria spp. is induced by iron limitation and stationary growth phase. Gene 296:121-128.
35. Rosenow, E. M., and E. H. Marth. 1987. Growth of Listeria monocytogenes in skim, whole and chocolate milk, and in whipping cream during incubation at 4, 8, 13, 21 and 35°C. J. Food Prot. 50:452-459.
36. SAS Institute, Inc. 2004. SAS/STAT 9.1 user's guide. SAS Institute, Inc., Cary, NC.
37. Savijoki, K., H. Ingmer, and P. Varmanen. 2006. Proteolytic systems of lactic acid bacteria. Appl. Microbiol. Biotechnol. 71:394-406.
38. Severin, S., and X. Wenshui. 2005. Milk biologically active components as nutraceuticals: review. Crit. Rev. Food Sci. Nutr. 45:645-656.
39. Smeianov, V. V., P. Wechter, J. R. Broadbent, J. E. Hughes, B. T. Rodríguez, T. K. Christensen, Y. Ardö, and J. L. Steele. 2007. Comparative high-density microarray analysis of gene expression during growth of Lactobacillus helveticus in milk versus rich culture medium. Appl. Environ. Microbiol. 73:2661-2672.
40. Verheul, A., F. M. Rombouts, and T. Abee. 1998. Utilization of oligopeptides by Listeria monocytogenes Scott A. Appl. Environ. Microbiol. 64:1059-1065.
41. Wolfinger, R. D., G. Gibson, E. D. Wolfinger, L. Bennett, H. Hamadeh, P. Bushel, C. Afshari, and R. S. Paules. 2001. Assessing gene significance from cDNA microarray expression data via mixed models. J. Comput. Biol. 8:625-637.
42. Wonderling, L. D., B. J. Wilkinson, and D. O. Bayles. 2004. The htrA (degP) gene of Listeria monocytogenes 10403S is essential for optimal growth under stress conditions. Appl. Environ. Microbiol. 70:1935-1943.
43. Yamanaka, K., L. Fang, and M. Inouye. 1998. The CspA family in Escherichia coli: multiple gene duplication for stress adaptation. Mol. Microbiol. 27:247-255.
44. Yamanaka, K., and M. Inouye. 2001. Induction of CspA, an E. coli major cold-shock protein, upon nutritional upshift at 37 degrees C. Genes Cells 6:279-290.