Developing PCR primers using a new computer program for detection of multiple animal-derived materials in feed

Journal of Food Protection

Volumn 71, Issue 11, 2008, Pages 2257-2262

  Shinoda, Naoki ^a   Kusama, Toyoko ^a   Yoshida, Tomotaro ^a   Sugiura, Tatsuki ^b   Kadowaki, Koh Ichi ^c   Onodera, Takashi ^d   Sugiura, Katsuaki ^a  

^a FOOD AND AGRICULTURAL MATERIALS INSPECTION CENTER   (Japan)

^b Ebisu Business Tower   (Japan)

^c NATIONAL VETERINARY ASSAY LABORATORY   (Japan)

^d UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMALIA; BOS; BOVIDAE; BOVINAE; BOVINE SPONGIFORM ENCEPHALOPATHY PRION; CAPRA HIRCUS; OVIS ARIES; SUIDAE;

EID: 55849147660     PISSN: 0362028X     EISSN: None     Source Type: Journal    
DOI: 10.4315/0362-028X-71.11.2257     Document Type: Article

References (14)

1. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
2. Benson, D. A., I. Karsch-Mizrachi, D. J. Lipman, J. Ostell, B. A. Rapp, and D. L. Wheeler. 2002. GenBank. Nucleic Acids Res. 30:17-20.
3. Chen, F. C., Y. H. Hsieh, and R. C. Bridgman. 2004. Monoclonal antibody-based sandwich enzyme-linked immunosorbent assay for sensitive detection of prohibited ruminant proteins in feedstuffs. J. Food Prot. 67:544-549.
4. Emrich, S. J., M. Lowe, and A. L. Delcher. 2003. PROBEmer: a web-based software tool for selecting optimal DNA oligos. Nucleic Acids Res. 31:3746-3750.
5. Jarman, S. N. 2004. Amplicon: software for designing PCR primers on aligned DNA sequences. Bioinformatics 20:1644-1645.
6. Kusama, T., T. Nomura, and K. Kadowaki. 2004. Development of primers for detection of meat and bone meal in ruminant feed and identification of animal origin. J. Food Prot. 67:1289-1292.
7. Li, F., and G. D. Stormo. 2001. Selection of optimal DNA oligos for gene expression arrays. Bioinformatics 17:1067-1076.
8. Ministry of Agriculture, Forestry and Fisheries. 2008. Establishment of the methods of analysis in feeds and feed additives (notification no. 19-Shoan-14729). Available at: http://www.famic.go.jp/ffis/feed/tuti/19_14729. html. Accessed 20 June 2008.
9. Momcilovic, D., and A. Rasooly. 2000. Detection and analysis of animal materials in food and feed. J. Food Prot. 63:1602-1609.
10. Nikaido, I. 2006. KNOB: KNOPPIX for Bio. Available at: http://knob.sourceforge.jp/. Accessed 19 May 2008.
11. Rice, P., I. Longden, and A. Bleasby. 2000. EMBOSS: the European molecular biology open software suite. Trends Genet. 16:276-277.
12. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
13. Toyoda, A., M. Nakajo, H. Kawachi, T. Matsui, and H. Yano. 2004. PCR detection of bovine mitochondrial DNA derived from meat and bone meal in feed. J. Food Prot. 67:2829-2832.
14. Wilesmith, J. W., G. A. H. Wells, M. P. Cranwell, and J. B. M. Ryan. 1988. Bovine spongiform encephalopathy: epidemiological studies. Vet. Rec. 123:638-644.