메뉴 건너뛰기




Volumn 2, Issue 2, 2008, Pages 124-129

Diagnosis of pathogens using DNA microarray

Author keywords

Bacteria; Diagnosis; DNA microarray; Fungus; Infectious disease; Probe; Virus

Indexed keywords

COST EFFECTIVENESS; DIAGNOSIS; DNA; HEALTH RISKS; PATIENT TREATMENT; PROBES; VIRUSES;

EID: 55849132677     PISSN: 18722083     EISSN: None     Source Type: Journal    
DOI: 10.2174/187220808784619711     Document Type: Review
Times cited : (16)

References (81)
  • 5
    • 0036078026 scopus 로고    scopus 로고
    • Gene expression profiling by DNA microarray technology
    • Iida K, Nishimura, I. Gene expression profiling by DNA microarray technology. Crit Rev Oral Biol Med 2002; 13(1): 35-50.
    • (2002) Crit Rev Oral Biol Med , vol.13 , Issue.1 , pp. 35-50
    • Iida, K.1    Nishimura, I.2
  • 10
    • 85189273616 scopus 로고    scopus 로고
    • US20077157227
    • Wang, E.: US20077157227 (2007).
    • (2007)
    • Wang, E.1
  • 12
    • 85189273252 scopus 로고    scopus 로고
    • US20056913879
    • Schena, M. A.: US20056913879 (2005).
    • (2005)
    • Schena, M.A.1
  • 14
    • 85189279422 scopus 로고    scopus 로고
    • US20020029113A1 2002
    • Wang, Y., Hu, G.: US20020029113A1 (2002).
    • Wang, Y.1    Hu, G.2
  • 17
    • 33748755546 scopus 로고    scopus 로고
    • Proteome analysis of cultured fibroblasts from type 1 diabetic patients and normal subjects
    • Puricelli L, Iori E, Millioni R, et al. Proteome analysis of cultured fibroblasts from type 1 diabetic patients and normal subjects. J Clin Endocrinol Metab 2006; 91: 3507-3514.
    • (2006) J Clin Endocrinol Metab , vol.91 , pp. 3507-3514
    • Puricelli, L.1    Iori, E.2    Millioni, R.3
  • 18
    • 4243073059 scopus 로고    scopus 로고
    • Gene expression in juvenile arthritis and spondyloarthropathy: Pro-angiogenic ELR+ chemokine genes relate to course of arthritis
    • Barnes MG, Aronow BJ, Luyrink LK, et al. Gene expression in juvenile arthritis and spondyloarthropathy: pro-angiogenic ELR+ chemokine genes relate to course of arthritis. Rheumatology 2004; 43: 973-979.
    • (2004) Rheumatology , vol.43 , pp. 973-979
    • Barnes, M.G.1    Aronow, B.J.2    Luyrink, L.K.3
  • 19
    • 0038487395 scopus 로고    scopus 로고
    • Gene profiling identifies secreted protein transcripts from peripheral blood cells in coronary artery disease
    • Ma J, Liew CC. Gene profiling identifies secreted protein transcripts from peripheral blood cells in coronary artery disease. J Mol Cell Cardiol 2003; 35: 993-998.
    • (2003) J Mol Cell Cardiol , vol.35 , pp. 993-998
    • Ma, J.1    Liew, C.C.2
  • 20
    • 18244409687 scopus 로고    scopus 로고
    • Gene expression profiling predicts clinical outcome of breast cancer
    • van't Veer LJ, Dai HY, van de Vijver MJ, et al. Gene expression profiling predicts clinical outcome of breast cancer. Nature 2002; 415: 530-536.
    • (2002) Nature , vol.415 , pp. 530-536
    • van't Veer, L.J.1    Dai, H.Y.2    van de Vijver, M.J.3
  • 21
    • 85189265949 scopus 로고    scopus 로고
    • Chen X, Cheung ST, So S, et al. Gene expression patterns in human liver cancers. Mol Biol Cell 2002; 13: 1929-1939.
    • Chen X, Cheung ST, So S, et al. Gene expression patterns in human liver cancers. Mol Biol Cell 2002; 13: 1929-1939.
  • 22
    • 11144299792 scopus 로고    scopus 로고
    • Development of DNA microarray for pathogen detection
    • Yoo SM, Keum KC, Yoo SY, et al. Development of DNA microarray for pathogen detection. Biotech Bioproc Eng 2004, 9: 93-99.
    • (2004) Biotech Bioproc Eng , vol.9 , pp. 93-99
    • Yoo, S.M.1    Keum, K.C.2    Yoo, S.Y.3
  • 23
    • 19844379463 scopus 로고    scopus 로고
    • Challenges and opportunities for pathogen detection using DNA microarrays
    • Call DR. Challenges and opportunities for pathogen detection using DNA microarrays. Critical Rev Microbiol 2005; 31: 91-99.
    • (2005) Critical Rev Microbiol , vol.31 , pp. 91-99
    • Call, D.R.1
  • 26
    • 0033952657 scopus 로고    scopus 로고
    • Rapid diagnosis of bacteremia by universal amplification of 23S ribosomal DNA followed by hybridization to an oligonucleotide array
    • Anthony RM, Brown TJ, French GL. Rapid diagnosis of bacteremia by universal amplification of 23S ribosomal DNA followed by hybridization to an oligonucleotide array. J Clin Microbiol 2000; 38(2): 781-788.
    • (2000) J Clin Microbiol , vol.38 , Issue.2 , pp. 781-788
    • Anthony, R.M.1    Brown, T.J.2    French, G.L.3
  • 27
    • 0037031130 scopus 로고    scopus 로고
    • Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples
    • Wang, RF, Beggs ML, Robertson LH, Cerniglia CE. 2002. Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples. FEMS Microbiol Lett 2002; 213(2): 175-182.
    • (2002) FEMS Microbiol Lett , vol.213 , Issue.2 , pp. 175-182
    • Wang, R.F.1    Beggs, M.L.2    Robertson, L.H.3    Cerniglia, C.E.4
  • 28
    • 0036812495 scopus 로고    scopus 로고
    • Development of a membrane-array method for the detection of human intestinal bacteria in fecal samples
    • Wang RF, Kim SJ, Robertson LH, Cerniglia CE. Development of a membrane-array method for the detection of human intestinal bacteria in fecal samples. Mol Cell Probes 2002; 16(5): 341-350.
    • (2002) Mol Cell Probes , vol.16 , Issue.5 , pp. 341-350
    • Wang, R.F.1    Kim, S.J.2    Robertson, L.H.3    Cerniglia, C.E.4
  • 30
    • 85189267584 scopus 로고    scopus 로고
    • Lee, S.-Y., Chang, K.-H., Yoo, S.-Y., Yoo, S.-M., Keum, K.-C., Yoo, N.-C., Yoo, W.-M., Lee, G., Kim, J.-M.: WO03095677A1 (2003).
    • Lee, S.-Y., Chang, K.-H., Yoo, S.-Y., Yoo, S.-M., Keum, K.-C., Yoo, N.-C., Yoo, W.-M., Lee, G., Kim, J.-M.: WO03095677A1 (2003).
  • 31
    • 85189266521 scopus 로고    scopus 로고
    • Volokhov D, Chizhikov V, Chumakov K, Rasooly A. Microarray-based identification of thermophilic Campylobacter jejuni, C. coli, C. lari, and C. upsaliensis. J Clin Microbiol 2003; 41(9): 4071-4080.
    • Volokhov D, Chizhikov V, Chumakov K, Rasooly A. Microarray-based identification of thermophilic Campylobacter jejuni, C. coli, C. lari, and C. upsaliensis. J Clin Microbiol 2003; 41(9): 4071-4080.
  • 32
    • 33746216159 scopus 로고    scopus 로고
    • Identification and characterization of bacterial pathogens causing bloodstream infections by DNA microarray
    • Cleven BE, Palka-Santini M, Gielen J, Meembor S, Krönke M, Krut O. Identification and characterization of bacterial pathogens causing bloodstream infections by DNA microarray. J Clin Microbiol 2006; 44 (7): 2389-2397.
    • (2006) J Clin Microbiol , vol.44 , Issue.7 , pp. 2389-2397
    • Cleven, B.E.1    Palka-Santini, M.2    Gielen, J.3    Meembor, S.4    Krönke, M.5    Krut, O.6
  • 33
    • 33846087685 scopus 로고    scopus 로고
    • Towards pathogenomics: A web-based resource for pathogenicity islands
    • Yoon SH, Park Y-K, Lee S, et al. Towards pathogenomics: a web-based resource for pathogenicity islands. Nucleic Acids Res 2007, 35: D395-D400.
    • (2007) Nucleic Acids Res , vol.35
    • Yoon, S.H.1    Park, Y.-K.2    Lee, S.3
  • 34
    • 13444249995 scopus 로고    scopus 로고
    • VFDB: A reference database for bacterial virulence factors
    • Chen LH, Yang J, Yu J, et al. VFDB: A reference database for bacterial virulence factors. Nucleic Acids Res 2005, 33:D325-D328.
    • (2005) Nucleic Acids Res , vol.33
    • Chen, L.H.1    Yang, J.2    Yu, J.3
  • 39
    • 3142654211 scopus 로고    scopus 로고
    • The challenge of emerging and re-emerging infectious diseases
    • Morens DM, Folkers GK, Fauci AS. The challenge of emerging and re-emerging infectious diseases. Nature 2007; 430:242-249.
    • (2007) Nature , vol.430 , pp. 242-249
    • Morens, D.M.1    Folkers, G.K.2    Fauci, A.S.3
  • 40
    • 85189257126 scopus 로고    scopus 로고
    • US20070092871A1 2007
    • Lodes, M., Suciu, D.: US20070092871A1 (2007).
    • Lodes, M.1    Suciu, D.2
  • 44
    • 85189276961 scopus 로고    scopus 로고
    • US20077291465
    • Karaolis, D.K.R.: US20077291465 (2007).
    • (2007)
    • Karaolis, D.K.R.1
  • 45
    • 32844461332 scopus 로고    scopus 로고
    • DNA microarray-based detection of nosocomial pathogenic Pseudomonas aeruginosa and Acinetobacter baumannii
    • Keum KC, Yoo SM, Lee SY, et al. DNA microarray-based detection of nosocomial pathogenic Pseudomonas aeruginosa and Acinetobacter baumannii. Mol Cell Probes 2006; 20(1): 42-50.
    • (2006) Mol Cell Probes , vol.20 , Issue.1 , pp. 42-50
    • Keum, K.C.1    Yoo, S.M.2    Lee, S.Y.3
  • 46
    • 0038558598 scopus 로고    scopus 로고
    • Sequence versus structure for the direct detection of 16S rRNA on planar oligonucleotide microarrays
    • Chandler DP, Newton GJ, Small JA, Daly DS. Sequence versus structure for the direct detection of 16S rRNA on planar oligonucleotide microarrays. Appl Environ Microbiol 2003; 69(5): 2950-2958.
    • (2003) Appl Environ Microbiol , vol.69 , Issue.5 , pp. 2950-2958
    • Chandler, D.P.1    Newton, G.J.2    Small, J.A.3    Daly, D.S.4
  • 47
    • 28544450415 scopus 로고    scopus 로고
    • Position of the fluorescent label is a crucial factor determining signal intensity in microarray hybridizations
    • Zhang L.H, Thomas RB. Position of the fluorescent label is a crucial factor determining signal intensity in microarray hybridizations. Nucleic Acids Res 2005, 33(19): e166.
    • (2005) Nucleic Acids Res , vol.33 , Issue.19
    • Zhang, L.H.1    Thomas, R.B.2
  • 49
    • 85189269137 scopus 로고    scopus 로고
    • US20067117095
    • Hubbell, E.: US20067117095 (2006).
    • (2006)
    • Hubbell, E.1
  • 55
    • 85189261364 scopus 로고    scopus 로고
    • US20070087370A1 2007
    • Curry, B.: US20070087370A1 (2007).
    • Curry, B.1
  • 58
    • 41549140097 scopus 로고    scopus 로고
    • Identification of upper respiratory tract pathogens using electrochemical detection on an oligonucleotide microarray
    • Lodes MJ, Suciu D, Wilmoth JL, et al. Identification of upper respiratory tract pathogens using electrochemical detection on an oligonucleotide microarray. PLoS ONE 2007; 2(9):e924.
    • (2007) PLoS ONE , vol.2 , Issue.9
    • Lodes, M.J.1    Suciu, D.2    Wilmoth, J.L.3
  • 62
    • 34848838870 scopus 로고    scopus 로고
    • Identification of human pathogens isolated from blood using microarray hybridisation and signal pattern recognition
    • Wiesinger-Mayr H, Vierlinger K, Pichler R, et al. Identification of human pathogens isolated from blood using microarray hybridisation and signal pattern recognition. BMC Microbiol. 2007; 7: 78.
    • (2007) BMC Microbiol , vol.7 , pp. 78
    • Wiesinger-Mayr, H.1    Vierlinger, K.2    Pichler, R.3
  • 63
    • 34547615719 scopus 로고    scopus 로고
    • Simultaneous detection and high-throughput identification of a panel of RNA viruses causing respiratory tract infections
    • Li H, McCormac MA, Estes RW, et al. Simultaneous detection and high-throughput identification of a panel of RNA viruses causing respiratory tract infections. J Clin Microbiol 2007; 45(7):2105-2109.
    • (2007) J Clin Microbiol , vol.45 , Issue.7 , pp. 2105-2109
    • Li, H.1    McCormac, M.A.2    Estes, R.W.3
  • 64
    • 33745159353 scopus 로고    scopus 로고
    • Combining multiplex reverse transcription-PCR and a diagnostic microarray to detect and differentiate enterovirus 71 and coxsackievirus A16
    • Chen TC; Chen GW; Hsiung CA, et al. Combining multiplex reverse transcription-PCR and a diagnostic microarray to detect and differentiate enterovirus 71 and coxsackievirus A16. J Clin Microbiol 2006; 44(6): 2212-2219.
    • (2006) J Clin Microbiol , vol.44 , Issue.6 , pp. 2212-2219
    • Chen, T.C.1    Chen, G.W.2    Hsiung, C.A.3
  • 65
    • 34548061824 scopus 로고    scopus 로고
    • Development of a sensitive and specific multiplex PCR method combined with DNA microarray primer extension to detect Betapapillomavirus types
    • Gheit T, Billoud G, de Koning MN, et al. Development of a sensitive and specific multiplex PCR method combined with DNA microarray primer extension to detect Betapapillomavirus types. J Clin Microbiol 2007; 45(8): 2537-2544.
    • (2007) J Clin Microbiol , vol.45 , Issue.8 , pp. 2537-2544
    • Gheit, T.1    Billoud, G.2    de Koning, M.N.3
  • 66
    • 24944497628 scopus 로고    scopus 로고
    • Multiplexed detection of pathogen DNA with DNA-based fluorescence nanobarcodes
    • Li Y, Cu YT, Luo D. Multiplexed detection of pathogen DNA with DNA-based fluorescence nanobarcodes. Nat Biotechnol 2005; 23(7): 885-889.
    • (2005) Nat Biotechnol , vol.23 , Issue.7 , pp. 885-889
    • Li, Y.1    Cu, Y.T.2    Luo, D.3
  • 68
    • 0842329661 scopus 로고    scopus 로고
    • Dextran sulfate provides a quantitative and quick microarray hybridization reaction
    • Ku W., Lau WK, Tseng Y, Tzeng C, Chiu S. Dextran sulfate provides a quantitative and quick microarray hybridization reaction. Biochem Biophys Res Commun 2004; 315(1): 30-37.
    • (2004) Biochem Biophys Res Commun , vol.315 , Issue.1 , pp. 30-37
    • Ku, W.1    Lau, W.K.2    Tseng, Y.3    Tzeng, C.4    Chiu, S.5
  • 70
    • 85189253525 scopus 로고    scopus 로고
    • US20060252143A1 2006
    • Lo, W.: US20060252143A1 (2006).
    • Lo, W.1
  • 73
    • 33744948541 scopus 로고    scopus 로고
    • Array-based nano-amplification technique was applied in detection of Hepatitis E virus
    • Liu HH, Cao X, Yang Y, M. Liu G., Wang YF. Array-based nano-amplification technique was applied in detection of Hepatitis E virus. J Biochem Mol Biol 2006; 39(3): 247-252.
    • (2006) J Biochem Mol Biol , vol.39 , Issue.3 , pp. 247-252
    • Liu, H.H.1    Cao, X.2    Yang, Y.M.3    Liu, G.4    Wang, Y.F.5
  • 74
  • 76
    • 85189277562 scopus 로고    scopus 로고
    • US20030091991A1 2003
    • Ezaki, T.: US20030091991A1 (2003).
    • Ezaki, T.1
  • 81
    • 85189268774 scopus 로고    scopus 로고
    • US20030186222A1 2003
    • Paul, J. H. III.: US20030186222A1 (2003).
    • Paul III, J.H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.