Development of a sensitive and specific multiplex PCR method combined with DNA microarray primer extension to detect betapapillomavirus types

Journal of Clinical Microbiology

Volumn 45, Issue 8, 2007, Pages 2537-2544

  Gheit, Tarik ^a   Billoud, Gaëlle ^a   De Koning, Maurits N C ^b   Gemignani, Federica ^c   Forslund, Ola ^e   Sylla, Bakary S ^a   Vaccarella, Salvatore ^a   Franceschi, Silvia ^a   Landi, Stefano ^c   Quint, Wim G V ^b   Canzian, Federico ^d   Tommasino, Massimo ^a  

^a INTERNATIONAL AGENCY FOR RESEARCH ON CANCER   (France)

^b DDL DIAGNOSTIC LABORATORY   (Netherlands)

^c UNIVERSITY OF PISA   (Italy)

^d GERMAN CANCER RESEARCH CENTER DKFZ   (Germany)

^e LUND UNIVERSITY HOSPITAL   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DNA MICROARRAY; HUMAN PAPILLOMAVIRUS TYPE 12; HUMAN PAPILLOMAVIRUS TYPE 14; HUMAN PAPILLOMAVIRUS TYPE 15; HUMAN PAPILLOMAVIRUS TYPE 17; HUMAN PAPILLOMAVIRUS TYPE 19; HUMAN PAPILLOMAVIRUS TYPE 20; HUMAN PAPILLOMAVIRUS TYPE 21; HUMAN PAPILLOMAVIRUS TYPE 22; HUMAN PAPILLOMAVIRUS TYPE 23; HUMAN PAPILLOMAVIRUS TYPE 24; HUMAN PAPILLOMAVIRUS TYPE 25; HUMAN PAPILLOMAVIRUS TYPE 36; HUMAN PAPILLOMAVIRUS TYPE 37; HUMAN PAPILLOMAVIRUS TYPE 38; HUMAN PAPILLOMAVIRUS TYPE 47; HUMAN PAPILLOMAVIRUS TYPE 49; HUMAN PAPILLOMAVIRUS TYPE 5; HUMAN PAPILLOMAVIRUS TYPE 75; HUMAN PAPILLOMAVIRUS TYPE 76; HUMAN PAPILLOMAVIRUS TYPE 8; HUMAN PAPILLOMAVIRUS TYPE 80; HUMAN PAPILLOMAVIRUS TYPE 9; HUMAN PAPILLOMAVIRUS TYPE 92; HUMAN PAPILLOMAVIRUS TYPE 93; HUMAN PAPILLOMAVIRUS TYPE 96; INTERMETHOD COMPARISON; MULTIPLEX POLYMERASE CHAIN REACTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PAPILLOMA VIRUS; PRIORITY JOURNAL; RELIABILITY; SENSITIVITY AND SPECIFICITY; SKIN CANCER; STATISTICAL ANALYSIS; VIRUS DETECTION; WART VIRUS;

BETAPAPILLOMAVIRUS; GENOTYPE; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PAPILLOMAVIRUS E7 PROTEINS; PAPILLOMAVIRUS INFECTIONS; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY;

BETAPAPILLOMAVIRUS; HUMAN PAPILLOMAVIRUS; HUMAN PAPILLOMAVIRUS TYPES;

EID: 34548061824     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.00747-07     Document Type: Article

References (23)

1. Alotaibi, L., N. Provost, S. Gagnon, E. L. Franco, and F. Coutlee. 2006. Diversity ol cutaneous human papillomavirus types in individuals with and without skin lesion. J. Clin. Virol. 36:133-140.
2. Altman, D. G. 1991. Practical statistics for medical research. Chapman and Hall, London, United Kingdom.
3. Antonsson, A., O. Forslund, H. Ekberg, G. Sterner, and B. G. Hansson. 2000. The ubiquity and impressive genomic diversity of human skin papillomaviruses suggest a commensalic nature of these viruses. J. Virol. 74:11636-11641.
4. Auffray, C., C. Mundy, and A. Metspalu. 2000. DNA arrays: methods and applications: report on HUGO Meeting, Tartu, Estonia, 23-26 May, 1999. Eur. J. Hum. Genet. 8:236-238.
5. Berkhout, R. J., L. M. Tieben, H. L. Smits, J. N. Bavinck, B. J. Vermeer, and J. ter Schegget. 1995. Nested PCR approach for detection and typing of epidermodysplasia verruciformis-associated human papillomavirus types in cutaneous cancers from renal transplant recipients. J. Clin. Microbiol. 33:690-695.
6. Bouvard, V., A. S. Gabet, R. Accardi, S. B. Sylla, and M. Tommasino. 2006. The cutaneous human papillomaviruses and non-melanoma-skin cancer. Caister Academic Press, Norfolk, United Kingdom.
7. Brink, A. A. T. P., B. Lloveras, I. Nindl, D. A. Heideman, D. Kramer, R. Pol, M. J. Fuente, C. J. L. M. Meijer, and P. J. F. Snijders. 2005. Development of a general-primer-PCR-reverse-line-blotting system for detection of beta and gamma cutaneous human papillomaviruses. J. Clin. Microbiol. 43:5581-5587.
8. de Koning, M., W. Quint, L. Struijk, B. Kleter, P. Wanningen, L. J. van Doom, S. J. Weissenborn, M. Feltkamp, and J. ter Schegget. 2006. Evaluation of a novel highly sensitive, broad-spectrum PCR-reverse hybridization assay for detection and identification of beta-papillomavirus DNA. J. Clin. Microbiol. 44:1792-1800.
9. de Villiers, E. M., C. Fauquet, T. R. Broker, H. U. Bernard, and H. zur Hausen. 2004. Classification of papillomaviruses. Virology 324:17-27.
10. Forslund, O., A. Antonsson, P. Nordin, B. Stenquist, and B. G. Hansson. 1999. A broad range of human papillomavirus types detected with a general PCR method suitable for analysis of cutaneous tumours and normal skin. J. Gen. Virol. 80:2437-2443.
11. Forslund, O., H. Ly, and G. Higgins. 2003. Improved detection of cutaneous human papillomavirus DNA by single tube nested 'hanging droplet' PCR. J. Virol. Methods 110:129-136.
12. Gemignani, F., S. Landi, A. Chabrier, A. Smet, I. Zehbe, F. Canzian, and M. Tommasino. 2004. Generation of a DNA microarray for determination of E6 natural variants of human papillomavirus type 16. J. Virol. Methods 119:95-102.
13. Gheit, T., S. Landi, F. Gemignani, P. J. Snijders, S. Vaccarella, S. Franceschi, F. Canzian, and M. Tommasino. 2006. Development of a sensitive and specific assay combining multiplex PCR and DNA microarray primer extension to detect high-risk mucosal human papillomavirus types. J. Clin. Microbiol. 44:2025-2031.
14. Guo, Z., R. A. Guilfoyle, A. J. Thiel, R. Wang, and L. M. Smith. 1994. Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports. Nucleic Acids Res. 22:5456-5465.
15. Kurg, A., N. Tonisson, I. Georgiou, J. Shumaker, J. Tollett, and A. Metspalu. 2000. Arrayed primer extension: solid-phase four-color DNA resequencing and mutation detection technology. Genet. Test. 4:1-7.
16. Pfister, H. 2003. Chapter 8: human papillomavirus and skin cancer. J. Natl. Cancer Inst. Monogr. 31:52-56.
17. Pfister, H., P. G. Fuchs, S. Majewski, S. Jablonska, I. Pniewska, and M. Malejczyk. 2003. High prevalence of epidermodysplasia verruciformis-associated human papillomavirus DNA in actinic keratoses of the immunocompetent population. Arch. Dermatol. Res. 295:273-279.
18. Saiki, R. K., D. H. Gelfand, S. Stoffel, S. J. Scharf, R. Higuchi, G. T. Horn, K. B. Mullis, and H. A. Erlich. 1988. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239:487-491.
19. Shamanin, V., H. Delius, and E. M. de Villiers. 1994. Development of a broad spectrum PCR assay for papillomaviruses and its application in screening lung cancer biopsies. J. Gen. Virol. 75:1149-1156.
20. Shamanin, V., M. Glover, C. Rausch, C. Proby, I. M. Leigh, H. zur Hausen, and E. M. de Villiers. 1994. Specific types of human papillomavirus found in benign proliferations and carcinomas of the skin in immunosuppressed patients. Cancer Res. 54:4610-4613.
21. Shumaker, J. M., A. Metspalu, and C. T. Caskey. 1996. Mutation detection by solid phase primer extension. Hum. Mutat. 7:346-354.
22. Surentheran, T., C. A. Harwood, P. J. Spink, A. L. Sinclair, I. M. Leigh, C. M. Proby, J. M. McGregor, and J. Breuer. 1998. Detection and typing of human papillomaviruses in mucosal and cutaneous biopsies from immunosuppressed and immunocompetent patients and patients with epidermodysplasia verruciformis: a unified diagnostic approach. J. Clin. Pathol. 51:606-610.
23. zur Hausen, H. 2002. Papillomaviruses and cancer: from basic studies to clinical application. Nat. Rev. Cancer 2:342-350.