Number and phylogenetic affiliation of bacteria assimilating dimethylsulfoniopropionate and leucine in the ice-covered coastal Arctic Ocean

Journal of Marine Systems

Volumn 74, Issue 3-4, 2008, Pages 957-963

  Vila Costa, Maria ^a   Simó, Rafel ^a   Alonso Sáez, Laura ^a   Pedrós Alió, Carlos ^a  

^a INSTITUT DE CIÈNCIES DEL MAR   (Spain)

Author keywords

Arctic winter; Bacteria; Beaufort Sea; DMSP; FISH; Franklin Bay; Leucine; Microautoradiography

Indexed keywords

AMINO ACIDS; ARCTIC ENGINEERING; BACTERIOLOGY; FLUORESCENCE MICROSCOPY; MEATS; MICROSCOPIC EXAMINATION; SPRINGS (COMPONENTS); SULFUR;

ARCTIC WINTER; BEAUFORT SEA; DMSP; FRANKLIN BAY; LEUCINE; MICROAUTORADIOGRAPHY;

SUBSTRATES;

BACTERIUM; ICE; PHYLOGENETICS; PROTEIN; SUBSTRATE; SULFUR;

ARCTIC OCEAN; BEAUFORT SEA;

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); BACTEROIDETES; BETAPROTEOBACTERIA; GAMMAPROTEOBACTERIA; RHODOBACTERACEAE; ROSEOBACTER;

EID: 55849130717     PISSN: 09247963     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmarsys.2007.10.006     Document Type: Article

References (40)

1. Alonso C., and Pernthaler J. Incorporation of glucose under anoxic conditions by bacterioplankton from coastal North Sea surface waters. Appl. Environ. Microbiol. 71 (2005) 1709-1716
2. Alonso-Sáez L., Balagué V., Sà E.L., Sánchez O., González J.M., Pinhassi J., Massana R., Pernthaler J., Pedrós-Alió C., and Gasol J.M. Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and FISH. FEMS Microbiol. Ecol. 60 (2007) 98-112
3. Alonso-Sáez L., Sánchez O., Gasol J.M., and Pedrós-Alio C. Winter-to-summer changes in the composition and heterotrophic activity of coastal arctic prokaryotic assemblages. Environ. Microbiol. 10 9 (2008) 2444-2454
4. Amann R.I., Binder B.J., Olson R.J., Chisholm S.W., Devereux R., and Stahl D.A. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56 (1990) 1919-1925
5. Bano N., and Hollibaugh J.T. Phylogenetic composition of bacterioplankton assemblages from the Arctic Ocean. Appl. Environ. Microbiol. 68 (2002) 505-518
6. Brinkmeyer R., Knittel K., Jurgens J., Weyland H., Amann R., and Helmke E. Diversity and structure of bacterial communities in Arctic versus Antarctic pack ice. Appl. Environ. Microbiol. 69 (2003) 6610-6619
7. Curran M.A.J., and Jones G.B. Dimethyl sulfide in the Southern Ocean: seasonality and flux. J. Geophys. Res. 105 (2000) 20451-20459
8. Daims H., Brühl A., Amann R., Schleifer K., and Wagner M. The domain-specific probe eub338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. System. Appl. Microbiol. 22 (1999) 434-444
9. Eilers H., Pernthaler J., Peplies J., Glockner F.O., Gerdts G., and Amman R. Isolation of novel pelagic bacteria from the German Bight and their seasonal contribution to surface picoplankton. Appl. Environ. Microbiol. 67 (2001) 5134-5142
10. Elifantz, H., Dittel, A.I., Cottrell, M.T., Kirchman, D.L., in press. Dissolved organic matter assimilation by heterotrophic bacterial groups in the western Arctic Ocean. Aquat. Microb. Ecol.
11. Garneau M.-È., Vincent W.F., Alonso-Sáez L., Gratton Y., and Lovejoy C. Prokaryotic community structure and heterotrophic production in a river-influenced coastal arctic ecosystem. Aquat. Microb. Ecol. 42 (2006) 27-40
12. Gibson J.A.E., Garrick R.C., Burton H.R., and McTaggart A.R. Dimethylsulphide and the algae Phaeocyctis pouchetii in Antarctic coastal waters. Mar. Biol. 104 (1990) 339-346
13. Howard E.C., et al. Bacterial taxa that limit sulfur flux from the ocean. Science 314 (2006) 649-654
14. Karsten U.K., Kuck K., Vogt C., and Kirst G.O. Dimethylsulfoniopropionate production in phototrophic organisms and its physiological function as cryoprotectant. Biological and environmental chemistry of DMSP and related sulfonium compounds. In: Kiene R.P., Visscher P.T., Keller M.D., and Kirst G.O. (Eds). Title (1996), Plenum Press, New York
15. Kiene R.P., and Linn L.J. Distribution and turnover of dissolved DMSP and its relationship with bacterial production in the Gulf of Mexico. Limnol. Oceanogr. 45 (2000) 849-861
16. Kiene R.P., Linn L.J., González J.M., Moran M.A., and Bruton J.A. Dimethylsulfoniopropionate and methanethiol are important precursors of methionine and protein-sulfur in marine bacterioplankton. Appl. Environ. Microbiol. 65 (1999) 4549-4558
17. Kiene R.P., Linn L.J., and Bruton J.A. New and important roles for DMSP in marine microbial communities. J. Sea Res. 43 (2000) 209-224
18. Kirchman D.L., Elifantz H., Dittel A.I., Malmstrom R.R., and Cottrell M.T. Standing stocks and activity of Archaea and Bacteria in the western Arctic Ocean. Limnol. Oceanog. 52 (2007) 495-507
19. Leck C., and Persson C. The central Arctic Ocean as a source of dimethyl sulfide. Seasonal variability in relation to biological activity. Tellus 48B (1996) 156-177
20. Lee P.A., de Mora S.J., Gosselin M., Levasseur M., Bouillon R.C., Nozais C., and Michel C. Particulate dimethylsulfoxide in Artic sea-ice algal communities: the cryoprotectant hypothesis revisited. J. Phycol. 37 (2001) 488-499
21. Lee P.A., Saunders P.A., de Mora S., Deibel D., and Levasseur M. Influence of copepod grazing on concentrations of dissolved dimethylsulfoxide and related sulfur compounds in the North Water, northern Baffin Bay. Mar. Ecol. Pro. Ser. 255 (2003) 235-248
22. Levasseur M., Gosselin M., and Michauds S. A new source of dimethylsulfide (DMS) to the Arctic atmosphere: ice diatoms. Mar. Biol. 121 (1994) 381-387
23. Lovejoy C., Vincent W.F., Bonilla S., Roy S., Martineau M.-J., Terrado R., Potvin M., Massana R., and Pedrós-Alió C. Distribution, phylogeny and growth of cold-adapted picoprasinophytes in Arctic Seas. J. Phycol. 43 (2007) 78-89
24. Malmstrom R.R., Kiene R.P., and Kirchman D.L. Identification and enumeration of bacteria assimilating dimethylsulfoniopropionate (DMSP) in the North Atlantic and Gulf of Mexico. Limnol. Oceanogr. 49 2 (2004) 597-606
25. Malmstrom R.R., Kiene R.P., Cottrell M., and Kirchman D.L. Contribution of SAR11 bacteria to C, N, and S cycling in the North Atlantic Ocean. Appl. Environ. Mircobiol. 70 (2004) 4129-4135
26. Manz W., Amann R., Ludwig W., Vancanneyt M., and Schleifer H. Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: problems and solutions. Syst. Appl. Microbiol. 15 (1992) 593-600
27. Manz W., Amann R., Ludwig W., Vancanneyt M., and Schleifer H. Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum Cytophaga-Flavobacter-Bacteroides in the natural environment. Microbiology 142 (1996) 1097-1106
28. Matrai P.A., and Vernet M. Dynamics of the vernal bloom in the marginal ice zone of the Barents Sea: dimethylsulfide and dimethylsulfoniopropionate budgets. J. Geophys. Res. 102 (1997) 22965-22979
29. Neef, 1997. Anwendung der in situ-Einzelzell-Identifizierung von bakterin zur populationsanalyse in komplexen mikrobiellen Biozönosen. Ph. D. Thesis, Technische Universität Nünchen Munich Germany.
30. Pedrós-Alió C., and Newell S.Y. Microautoradiographic study of thymidine uptake in brackish waters around Sapelo Island, Georgia, USA. Mar. Ecol. Prog. Ser. 55 (1989) 83-94
31. Pernthaler A., Pernthaler J., and Amann R. Fluorescence in situ identification and catalyzed reporter deposition for the identification of marine bacteria. Appl. Environ. Microbiol. 68 (2002) 3094-3101
32. Rusch D.B., et al. The Sorcerer II Global Ocean Sampling Expedition: northwest Atlantic through eastern tropical Pacific. PLOS Biol. 5 (2007) 398-431
33. Simó R. Production of atmospheric sulfur by oceanic plankton: biogeochemical, ecological and evolutionary links. Trends Ecol. Evol. 16 (2001) 287-294
34. Simó R., Archer S.D., Pedrós-Alió C., Gilpin L., and Stelfox-Widdicombe C.E. Coupled dynamics of dimethylsulfoniopropionate and dimethylsulfide cycling and the microbial food web in surface waters of the North Atlantic. Limnol. Oceanogr. 47 (2002) 53-61
35. Simó R., Grimalt J.O., and Albaigés J. Sequential method for the field determination of nanomolar concentrations of dimethyl sulfoxide in natural waters. Anal. Chem. 68 (1996) 1493-1498
36. Vila M., Simó R., Kiene R.P., Pinhassi J., González J.M., Moran M.A., and Pedrós-Alió C. Use of microautoradiography combined with fluorescence in situ hybridization to determine dimethylsulfoniopropionate incorporation by marine bacterioplankton taxa. Appl. Environ. Microbiol. 70 (2004) 4648-4657
37. Vila-Costa M., Pinhassi J., Alonso C., Pernthaler J., and Simó R. An annual cycle of DMSP-sulfur and leucine assimilating bacterioplankton in the coastal NW Mediterranean. Environ. Microbiol. 9 (2007) 2451-2463
38. Venter J.C., et al. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304 (2004) 66-74
39. Wagner-Dobler I., and Biebl H. Environmental biology of the marine Roseobacter lineage. Annu. Rev. Microbiol. 60 (2006) 255-280
40. Wallner G., Amann R., and Beisker W. Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms. Cytometry 14 (1993) 136-143