Sphingopyxis marina sp. nov. and Sphingopyxis litoris sp. nov., isolated from seawater

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 10, 2008, Pages 2415-2419

  Kim, Bong Soo ^a   Lim, Young Woon ^b   Chun, Jongsik ^a  

^a Seoul National University   (South Korea)

^b National Institute of Biological Resources   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S; SEA WATER;

AEROBIC BACTERIUM; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; DNA DNA HYBRIDIZATION; GRAM NEGATIVE BACTERIUM; KOREA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPIC VARIATION; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SALINITY; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPHINGOPYXIS LITORIS; SPHINGOPYXIS MARINA; STRAIN DIFFERENCE;

FATTY ACIDS; GENES, BACTERIAL; GENES, RRNA; KOREA; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; SPHINGOMONADACEAE; WATER MICROBIOLOGY;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; SPHINGOPYXIS; SPHINGOPYXIS FLAVIMARIS;

EID: 55849103538     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65614-0     Document Type: Article

References (29)

1. Busse, H., El-Banna, T. & Auling, G. (1989). Evaluation of different approaches for identification of xenobiotic-degrading pseudomonads. Appl Environ Microbiol 55, 1578-1583.
2. Busse, H.-J., Denner, E. B. M., Buczolits, S., Salkinoja-Salonen, M., Bennasar, A. & Kampfer, P. (2003). Sphingomonas aurantiaca sp. nov., Sphingomonas aerolata sp. nov. and Sphingomonas faeni sp. nov., air- and dustborne and Antarctic, orange-pigmented, psychrotolerant bacteria, and emended description of the genus Sphingomonas. Int J Syst Evol Microbiol 53, 1253-1260.
3. Chun, J. & Goodfellow, M. (1995). A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. Int J Syst Bacteriol 45, 240-245.
4. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim B. K. & Lim, Y.-W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
5. Cowan, S. T. & Steel, K J. (1965). Manual for the Identification of Medical Bacteria. London: Cambridge University Press.
6. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
7. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
8. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
9. Flores, H. E. & Galston, A. W. (1982). Analysis of polyamines in higher plants by high performance liquid chromatography. Plant Physiol 69, 701-706.
10. Godoy, F., Vancanneyt, M., Martinez, M., Steinbuchel, A., Swings, J. & Rehm, B. H. (2003). Sphingopyxis chilensis sp. nov., a chlorophenol-degrading bacterium that accumulates polyhydroxyalkanoate, and transfer of Sphingomnas alaskensis to Sphingopyxis alaskensis comb. nov. Int J Syst Evol Microbiol 53, 473-477.
11. Jeon, Y. S., Chung, H., Park S., Hur, I., Lee, J. H. & Chun, J. (2005). jPHYDIT: a JAVA-based integrated environment for molecular phylogeny of ribosomal RN sequences. Bioinformatics 21, 3171-3173.
12. Kämpfer, P., Witzenberger, R., Danner, E. B. M., Busse, H.-J. & Neef, A. (2002). Sphingopyxis witflariensis sp. nov., isolated from activated sludge. Int J Syst Evol Microbiol 52, 2029-2034.
13. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
14. Lee, J.-S., Shin, Y. K., Yoon, J.-H., Takeuchi, M., Pyun, Y.-R. & Park, Y.-H. (2001). Sphingomonas aquatilis sp. nov., Sphingomonas koreensis sp. nov. and Sphingomonas taijonensis sp. nov., yellow-pigmented bacteria isolated from natural mineral water. Int J Syst Evol Microbiol 51, 1491-1498.
15. Lyman, J. & Fleming, R. H. (1940). Composition of sea water. J Mar Res 3, 134-146.
16. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
17. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
18. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
19. Swofford, D. L. (1998). PAUP: Phylogenetic analysis using parsimony, version 4. Sunderland, MA: Sinauer Associates.
20. Takeuchi, M., Kawai, F., Shimada, Y. & Yokota, A. (1993). Taxonomic study of pplyethylene glycol-utilizing bacteria: emended description of the genus Sphingomonas and new descriptions of Sphingomonas macrogoltabidus sp. nov., Sphingomonas sanguis sp. nov. and Sphingomonas terrae sp. nov. Syst Appl Microbiol 16, 227-238.
21. Takeuchi, M., Hamana, K. & Hiraishi, A. (2001). Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. Int J Syst Evol Microbiol 51, 1405-1417.
22. Vancanneyt, M., Schut, F., Snauwaert, C., Goris, J., Swings, J. & Gottschal, J. C. (2001). Sphingomonas alaskensis sp. nov., a dominant bacterium from a marine oligotrophic environment. Int J Syst Evol Microbiol 51, 73-79.
23. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H. Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
24. Yabuuchi, E., Kosako, Y., Fujiwara, N., Naka, T., Matsunaga, I., Ogura, H. & Kobayashi, K. (2002). Emendation of the genus Sphingomonas Yabuuchi et al. 1990 and junior objective synonymy of the species of three genera, Sphingobium, Novosphingobium and Sphingopyxis, in conjunction with Blastomonas ursincola. Int J Syst Evol Microbiol 52, 1485-1496.
25. Yi, H. & Chun, J. (2006). Thalassobius aestuarii sp. nov., isolated from tidal flat sediment. J Microbiol 44, 171-176.
26. Yi, H., Oh, H.-M., Lee, J.-H., Kim, S.-J. & Chun, J. (2005). Flavobacterium antarcticum sp. nov., a novel psychrotolerant bacterium isolated from the Antarctic. Int J Syst Evol Microbiol 55, 637-641.
27. Yoon, J.-H. & Oh, T.-K. (2005). Shingopyxis flavimaxis sp. nov., isolated from sea water of the Yellow Sea in Korea. Int J Syst Evol Microbiol 55, 369-373.
28. Yoon, J.-H, Lee, C.-H, Yeo, S-H. & Oil T.-K. (2005). Sphingopyxis baekryungensis sp. nov., an orange-pigmented bacterium isolated from sea water of the Yellow Sea in Korea. Int J Syst Evol Microbiol 55, 1223-1227.
29. ZoBell, C. E. (1941). Studies on marine bacteria. I. The cultural requirements of heterotrophic aerobes. J Mar Res 4, 42-75.