-
1
-
-
0023051843
-
Internal cavities and buried waters in globular proteins
-
Rashin AA, Iofin M, Honig B (1986) Internal cavities and buried waters in globular proteins. Biochemistry 25:3619-3625.
-
(1986)
Biochemistry
, vol.25
, pp. 3619-3625
-
-
Rashin, A.A.1
Iofin, M.2
Honig, B.3
-
2
-
-
0028095182
-
Buried waters and internal cavities in monomeric proteins
-
Williams MA, Goodfellow JM, Thornton JM (1994) Buried waters and internal cavities in monomeric proteins. Protein Sci 3:1224-1235.
-
(1994)
Protein Sci
, vol.3
, pp. 1224-1235
-
-
Williams, M.A.1
Goodfellow, J.M.2
Thornton, J.M.3
-
3
-
-
0027918556
-
Water: Now you see it, now you don't
-
Levitt M, Park BH (1993) Water: Now you see it, now you don't. Structure (London) 1:223-226.
-
(1993)
Structure (London)
, vol.1
, pp. 223-226
-
-
Levitt, M.1
Park, B.H.2
-
5
-
-
0026475084
-
Does hydrophobic hydration destabilize protein native structures?
-
Muller N (1992) Does hydrophobic hydration destabilize protein native structures? Trends Biochem Sci 17:459-463.
-
(1992)
Trends Biochem Sci
, vol.17
, pp. 459-463
-
-
Muller, N.1
-
6
-
-
0028921999
-
Demonstration of positionally disordered water within a protein hydrophobic cavity by NMR
-
Ernst JA, Clubb RT, Zhou H-X, Gronenborn AM, Clore GM (1995) Demonstration of positionally disordered water within a protein hydrophobic cavity by NMR. Science 267:1813-1817.
-
(1995)
Science
, vol.267
, pp. 1813-1817
-
-
Ernst, J.A.1
Clubb, R.T.2
Zhou, H.-X.3
Gronenborn, A.M.4
Clore, G.M.5
-
7
-
-
0029561720
-
Use of NMR to detect water within nonpolar cavities
-
Matthews BW, Morton AG, Dahlquist FW (1995) Use of NMR to detect water within nonpolar cavities. Science 270:1847-1849.
-
(1995)
Science
, vol.270
, pp. 1847-1849
-
-
Matthews, B.W.1
Morton, A.G.2
Dahlquist, F.W.3
-
8
-
-
0033524454
-
Disordered water within a hydrophobic protein cavity visualized by x-ray crystallography
-
Yu B, Blaber M, Gronenborn AM, Clore GM, Caspar DLD (1999) Disordered water within a hydrophobic protein cavity visualized by x-ray crystallography. Proc Natl Acad Sci USA 96:103-108.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 103-108
-
-
Yu, B.1
Blaber, M.2
Gronenborn, A.M.3
Clore, G.M.4
Caspar, D.L.D.5
-
9
-
-
33845957884
-
Determination of solvent content in cavities in IL-1β using experimentally phased electron density
-
Quillin ML, Wingfield PT, Matthews BW (2006) Determination of solvent content in cavities in IL-1β using experimentally phased electron density. Proc Natl Acad Sci USA 103:18148-18153.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 18148-18153
-
-
Quillin, M.L.1
Wingfield, P.T.2
Matthews, B.W.3
-
10
-
-
0029757992
-
Thermodynamic stability of water molecules in the bacteriorhodopsin proton channel: A molecular dynamics free energy perturbation study
-
Roux B, Nina M, Pomes R, Smith JC (1996) Thermodynamic stability of water molecules in the bacteriorhodopsin proton channel: a molecular dynamics free energy perturbation study. Biophys J 71:670-681.
-
(1996)
Biophys J
, vol.71
, pp. 670-681
-
-
Roux, B.1
Nina, M.2
Pomes, R.3
Smith, J.C.4
-
11
-
-
3042592839
-
Hydration free energies and entropies for water in protein interiors
-
Olano LR, Rick SW (2004) Hydration free energies and entropies for water in protein interiors. J Am Chem Soc 126:7991-8000.
-
(2004)
J Am Chem Soc
, vol.126
, pp. 7991-8000
-
-
Olano, L.R.1
Rick, S.W.2
-
12
-
-
0026189146
-
A molecular dynamics study of thermodynamic and structural aspects of the hydration of cavities in proteins
-
Wade RC, Mazor MH, McCammon JA, Quiocho FA (1991) A molecular dynamics study of thermodynamic and structural aspects of the hydration of cavities in proteins. Biopolymers 31:919-931.
-
(1991)
Biopolymers
, vol.31
, pp. 919-931
-
-
Wade, R.C.1
Mazor, M.H.2
McCammon, J.A.3
Quiocho, F.A.4
-
13
-
-
0028093141
-
On the probability of finding a water molecule in a nonpolar cavity
-
Wolfenden R, Radzicka A (1994) On the probability of finding a water molecule in a nonpolar cavity. Science 265:936-937.
-
(1994)
Science
, vol.265
, pp. 936-937
-
-
Wolfenden, R.1
Radzicka, A.2
-
14
-
-
0029937870
-
Hydrophilicity of cavities in proteins
-
Zhang L, Hermans J (1996) Hydrophilicity of cavities in proteins. Proteins 24:433-438.
-
(1996)
Proteins
, vol.24
, pp. 433-438
-
-
Zhang, L.1
Hermans, J.2
-
15
-
-
0030038545
-
Direct observation of protein solvation and discrete disorder with experimental crystallographic phases
-
Burling FT, Weis WI, Flaherty KM, Brunger AT (1996) Direct observation of protein solvation and discrete disorder with experimental crystallographic phases. Science 271:72-77.
-
(1996)
Science
, vol.271
, pp. 72-77
-
-
Burling, F.T.1
Weis, W.I.2
Flaherty, K.M.3
Brunger, A.T.4
-
16
-
-
0026567907
-
Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect
-
Eriksson AE, et al. (1992) Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect. Science 255:178-183.
-
(1992)
Science
, vol.255
, pp. 178-183
-
-
Eriksson, A.E.1
-
17
-
-
0026509036
-
A cavity-containing mutant of T4 lysozyme is stabilized by buried benzene
-
Eriksson AE, Baase WA, Wozniak JA, Matthews BW (1992) A cavity-containing mutant of T4 lysozyme is stabilized by buried benzene. Nature 355:371-373.
-
(1992)
Nature
, vol.355
, pp. 371-373
-
-
Eriksson, A.E.1
Baase, W.A.2
Wozniak, J.A.3
Matthews, B.W.4
-
18
-
-
0029016268
-
Energetic origins of specificity of ligand binding in an interior nonpolar cavity of T4 lysozyme
-
Morton A, Baase WA, Matthews BW (1995) Energetic origins of specificity of ligand binding in an interior nonpolar cavity of T4 lysozyme. Biochemistry 34:8564-8575.
-
(1995)
Biochemistry
, vol.34
, pp. 8564-8575
-
-
Morton, A.1
Baase, W.A.2
Matthews, B.W.3
-
19
-
-
0034730423
-
Size versus polarizability in protein-ligand interactions: Binding of noble gases within engineered cavities in phage T4 lysozyme
-
Quillin ML, Breyer WA, Griswold IJ, Matthews BW (2000) Size versus polarizability in protein-ligand interactions: Binding of noble gases within engineered cavities in phage T4 lysozyme. J Mol Biol 302:955-977.
-
(2000)
J Mol Biol
, vol.302
, pp. 955-977
-
-
Quillin, M.L.1
Breyer, W.A.2
Griswold, I.J.3
Matthews, B.W.4
-
20
-
-
0034680315
-
Flexibility and ligand exchange in a buried cavity mutant of T4 lysozyme studied by multinuclear NMR
-
Mulder FAA,HonB, Muhandiram DR, Dahlquist FW, Kay LE (2000) Flexibility and ligand exchange in a buried cavity mutant of T4 lysozyme studied by multinuclear NMR. Biochemistry 39:12614-12622.
-
(2000)
Biochemistry
, vol.39
, pp. 12614-12622
-
-
Mulder, F.A.A.1
Hon, B.2
Muhandiram, D.R.3
Dahlquist, F.W.4
Kay, L.E.5
-
21
-
-
0037138654
-
Slow internal dynamics in proteins: Application of NMR relaxation dispersion spectroscopy to methyl groups in a cavity mutant of T4 lysozyme
-
Mulder FAA, Hon B, Mittermaier A, Dahlquist FW, Kay LE (2002) Slow internal dynamics in proteins: Application of NMR relaxation dispersion spectroscopy to methyl groups in a cavity mutant of T4 lysozyme. J Am Chem Soc 124:1443-1451.
-
(2002)
J Am Chem Soc
, vol.124
, pp. 1443-1451
-
-
Mulder, F.A.A.1
Hon, B.2
Mittermaier, A.3
Dahlquist, F.W.4
Kay, L.E.5
-
22
-
-
23944438905
-
Dynamics of xenon binding inside the hydrophobic cavity of pseudo-wild-type bacteriophage T4 lysozyme explored through xenon-based NMR spectroscopy
-
Desvaux H, et al. (2005) Dynamics of xenon binding inside the hydrophobic cavity of pseudo-wild-type bacteriophage T4 lysozyme explored through xenon-based NMR spectroscopy. J Am Chem Soc 127:11676-11683.
-
(2005)
J Am Chem Soc
, vol.127
, pp. 11676-11683
-
-
Desvaux, H.1
-
23
-
-
28044463816
-
Cooperative water filling of a nonpolar protein cavity observed by high-pressure crystallography and simulation
-
Collins MD, Hummer G, Quillin ML, Matthews BW, Gruner SM (2005) Cooperative water filling of a nonpolar protein cavity observed by high-pressure crystallography and simulation. Proc Natl Acad Sci USA 102:16668-16671.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 16668-16671
-
-
Collins, M.D.1
Hummer, G.2
Quillin, M.L.3
Matthews, B.W.4
Gruner, S.M.5
-
24
-
-
33847308554
-
Structural rigidity of a large cavity-containing protein revealed by high-pressure crystallography
-
Collins MD, Quillin ML, Hummer G, Matthews BW, Gruner SM (2007) Structural rigidity of a large cavity-containing protein revealed by high-pressure crystallography. J Mol Biol 367:752-763.
-
(2007)
J Mol Biol
, vol.367
, pp. 752-763
-
-
Collins, M.D.1
Quillin, M.L.2
Hummer, G.3
Matthews, B.W.4
Gruner, S.M.5
-
25
-
-
0031893269
-
The response of T4 lysozyme to large-to-small substitutions within the core and its relation to the hydrophobic effect
-
Xu J, Baase WA, Baldwin E, Matthews BW (1998) The response of T4 lysozyme to large-to-small substitutions within the core and its relation to the hydrophobic effect. Protein Sci 7:158-177.
-
(1998)
Protein Sci
, vol.7
, pp. 158-177
-
-
Xu, J.1
Baase, W.A.2
Baldwin, E.3
Matthews, B.W.4
-
26
-
-
3543012707
-
Crystallography and NMR system (CNS): A new software system for macromolecular structure determination
-
Brunger AT, et al. (1998) Crystallography and NMR system (CNS): A new software system for macromolecular structure determination. Acta Crystallogr D 54:905-921.
-
(1998)
Acta Crystallogr D
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
-
27
-
-
0026532266
-
Design and structural analysis of alternative hydrophobic core packing arrangements in bacteriophage T4 lysozyme
-
Hurley JH, Baase WA, Matthews BW (1992) Design and structural analysis of alternative hydrophobic core packing arrangements in bacteriophage T4 lysozyme. J Mol Biol 224:1143-1159.
-
(1992)
J Mol Biol
, vol.224
, pp. 1143-1159
-
-
Hurley, J.H.1
Baase, W.A.2
Matthews, B.W.3
-
28
-
-
0017821233
-
Structure of lysozyme from bacteriophage T4: An electron density map at 2.4 Å resolution
-
Remington SJ, et al. (1978) Structure of lysozyme from bacteriophage T4: An electron density map at 2.4 Å resolution. J Mol Biol 118:81-98.
-
(1978)
J Mol Biol
, vol.118
, pp. 81-98
-
-
Remington, S.J.1
-
29
-
-
0023104358
-
Structure of bacteriophage T4 lysozyme refined at 1.7Å resolution
-
Weaver LH, Matthews BW (1987) Structure of bacteriophage T4 lysozyme refined at 1.7Å resolution. J Mol Biol 193:189-199.
-
(1987)
J Mol Biol
, vol.193
, pp. 189-199
-
-
Weaver, L.H.1
Matthews, B.W.2
-
30
-
-
0029994817
-
Using buried water molecules to explore the energy landscape of proteins
-
Denisov VP, Peters J, Hörlein HD, Halle B (1996) Using buried water molecules to explore the energy landscape of proteins. Nat Struct Biol 3:505-509.
-
(1996)
Nat Struct Biol
, vol.3
, pp. 505-509
-
-
Denisov, V.P.1
Peters, J.2
Hörlein, H.D.3
Halle, B.4
-
33
-
-
0344950364
-
Heat transfer from protein crystals: Implications for flash-cooling and X-ray beam heating
-
Kriminski S, Kazmierczak M, Thorne RE (2003) Heat transfer from protein crystals: Implications for flash-cooling and X-ray beam heating. Acta Crystallogr D 59:697-708.
-
(2003)
Acta Crystallogr D
, vol.59
, pp. 697-708
-
-
Kriminski, S.1
Kazmierczak, M.2
Thorne, R.E.3
-
35
-
-
0024564552
-
Control of enzyme activity by an engineered disulfide bond
-
Matsumura M, Matthews BW (1989) Control of enzyme activity by an engineered disulfide bond. Science 243:792-794.
-
(1989)
Science
, vol.243
, pp. 792-794
-
-
Matsumura, M.1
Matthews, B.W.2
-
36
-
-
0027439390
-
Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin
-
Van Duyne GD, Standaert RF, Karplus PA, Schreiber SL, Clardy J (1993) Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin. J Mol Biol 229:105-124.
-
(1993)
J Mol Biol
, vol.229
, pp. 105-124
-
-
Van Duyne, G.D.1
Standaert, R.F.2
Karplus, P.A.3
Schreiber, S.L.4
Clardy, J.5
-
37
-
-
0027394606
-
Similar hydrophobic replacements of Leu 99 and Phe 153 within the core of T4 lysozyme have different structural and thermodynamic consequences
-
Eriksson AE, Baase WA, Matthews BW (1993) Similar hydrophobic replacements of Leu 99 and Phe 153 within the core of T4 lysozyme have different structural and thermodynamic consequences. J Mol Biol 229:747-769.
-
(1993)
J Mol Biol
, vol.229
, pp. 747-769
-
-
Eriksson, A.E.1
Baase, W.A.2
Matthews, B.W.3
-
38
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z, Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276:307-326.
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
39
-
-
0038210935
-
Advances in direct methods for protein crystallography
-
Uson I, Sheldrick GM (1999) Advances in direct methods for protein crystallography. Curr Opin Struct Biol 9:643-648.
-
(1999)
Curr Opin Struct Biol
, vol.9
, pp. 643-648
-
-
Uson, I.1
Sheldrick, G.M.2
-
40
-
-
0028103275
-
-
Collaborative Computational Project No. 4 (1994) The CCP4 suite: Programs for protein crystallography. Acta Crystallogr D 50:760-763.
-
Collaborative Computational Project No. 4 (1994) The CCP4 suite: Programs for protein crystallography. Acta Crystallogr D 50:760-763.
-
-
-
-
41
-
-
0027159949
-
The molecular surface package
-
Connolly ML (1993) The molecular surface package. J Mol Graphics 11:139-141.
-
(1993)
J Mol Graphics
, vol.11
, pp. 139-141
-
-
Connolly, M.L.1
-
42
-
-
0015987251
-
Determination of molecular weight from protein crystals
-
Matthews BW (1974) Determination of molecular weight from protein crystals. J Mol Biol 82:513-526.
-
(1974)
J Mol Biol
, vol.82
, pp. 513-526
-
-
Matthews, B.W.1
|